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AMR
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153 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 1b84564d36 (v1.8.1.9011) update prevalence of some genera 2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends 70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends 2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends 58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends 6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends 859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends 680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends 1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends 152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends 4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends 641b88c814 website update 2022-03-27 09:37:55 +02:00
dr. M.S. (Matthijs) Berends 7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends 0fb9a1b194 prerelease 1.8.1 2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends 45e9546538 prerelease 1.8.1 
Merge branch 'development' of https://github.com/msberends/AMR into development

# Conflicts:
#	docs/articles/AMR.html
#	docs/articles/AMR_files/figure-html/disk_plots-1.png
#	docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
#	docs/articles/AMR_files/figure-html/mic_plots-1.png
#	docs/articles/AMR_files/figure-html/mic_plots-2.png
#	docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
#	docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
#	docs/articles/AMR_files/figure-html/plot 1-1.png
#	docs/articles/AMR_files/figure-html/plot 3-1.png
#	docs/articles/AMR_files/figure-html/plot 4-1.png
#	docs/articles/AMR_files/figure-html/plot 5-1.png
#	docs/articles/EUCAST.html
#	docs/articles/MDR.html
#	docs/articles/PCA.html
#	docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
#	docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
#	docs/articles/SPSS.html
#	docs/articles/WHONET.html
#	docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
#	docs/articles/benchmarks.html
#	docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
#	docs/articles/datasets.html
#	docs/articles/resistance_predict.html
#	docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png
#	docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png
#	docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png
#	docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png
#	docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png
#	docs/articles/welcome_to_AMR.html
#	docs/news/index.html
#	docs/pkgdown.yml
#	docs/reference/AMR-deprecated.html
#	docs/reference/AMR.html
#	docs/reference/WHOCC.html
#	docs/reference/WHONET.html
#	docs/reference/antibiotics.html
#	docs/reference/catalogue_of_life.html
#	docs/reference/catalogue_of_life_version.html
#	docs/reference/dosage.html
#	docs/reference/example_isolates.html
#	docs/reference/example_isolates_unclean.html
#	docs/reference/g.test.html
#	docs/reference/intrinsic_resistant.html
#	docs/reference/microorganisms.codes.html
#	docs/reference/microorganisms.html
#	docs/reference/microorganisms.old.html
#	docs/reference/rsi_translation.html
 2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends 1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends 8c9feea087 website update 2022-03-12 19:53:29 +01:00
dr. M.S. (Matthijs) Berends 08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends dedbe92322 (v1.8.0.9003) deps update 2022-03-02 23:16:37 +01:00
dr. M.S. (Matthijs) Berends 3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends 18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends 25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends 75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends 5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends 0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends 578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends 1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends 56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends 5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends 77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends 1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
dr. M.S. (Matthijs) Berends 75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
dr. M.S. (Matthijs) Berends b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
dr. M.S. (Matthijs) Berends 7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends 3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
dr. M.S. (Matthijs) Berends 5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends 694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends 9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends 91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00