Claude
1dabd4df3d
Replace bare backticks with cli inline markup across all messaging calls
...
- {.arg} for argument names in stop_/warning_/message_ calls
- {.cls} after "of class" text in format_class() and elsewhere
- {.fun} for function names (replaces `fn()` pattern)
- {.pkg} for tidyverse package names (dplyr, ggplot2)
- {.code} for code literals (TRUE, FALSE, expressions)
- Rewrite print.ab: use cli named-vector with * bullets and code
highlighting when cli >= 3.0.0; keep plain-text fallback otherwise
- Fix typo in as.sir(): "of must be" -> "or must be"
- switch sir.R verbose notes from message() to message_()
https://claude.ai/code/session_01XHWLohiSTdZvCutwD7ag2b
2026-03-19 08:35:26 +00:00
daab605ca4
(v3.0.1.9028) fix unique CIDs
2026-03-06 18:53:42 +01:00
60e8f2bae6
(v3.0.1.9026) fix ab_group(NA)
2026-03-06 12:41:27 +01:00
fd50c51543
(v3.0.1.9017) fix documentation
2026-01-08 14:03:02 +01:00
fa827f27f4
(v3.0.1.9012) fix translations
2026-01-07 11:00:58 +01:00
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
d94bdd2c6a
(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD
2025-07-17 17:05:41 +02:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
1ca40e8d67
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
bc4f8515e2
new Norwegian link
2024-03-03 23:24:57 +01:00
7be4dabbc0
support veterinary MIC/disk translation
2024-02-24 15:16:52 +01:00
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
9591688811
documentation update
2023-05-27 10:39:22 +02:00
0bcf55d3b6
improve as.mo()
2023-05-24 15:55:53 +02:00
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
45a9697c84
unit tests
2023-02-12 17:10:48 +01:00
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
75a4c1ef3e
fixes2
2023-02-06 14:34:38 +01:00
f7dd890b79
fixes
2023-02-06 12:38:52 +01:00
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
eef00069fd
add all options to documentation
2023-01-23 20:07:57 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
a0ee86536a
unit tests
2023-01-05 14:43:18 +01:00
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
76bcd3528c
move object assignment to AMR_env
2022-10-14 13:02:50 +02:00
955f9d7020
documentation fix
2022-10-10 21:03:39 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
3fca703fbf
new AMR distance function
2022-08-30 21:48:02 +02:00
2ed5f13880
Fixes #57
2022-08-28 21:13:26 +02:00
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
3b2b2be5f8
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
2022-03-02 15:38:55 +01:00
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
1fa3fc6af2
(v1.7.1.9061) bugfix set_ab_names
2021-12-05 23:21:59 +01:00
