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f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
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|
4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
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1e260d85c8
|
(v0.7.1.9095) get_column_abx() fix
|
2019-10-06 22:19:26 +02:00 |
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|
3d5692219e
|
(v0.7.1.9094) get_column_abx() improvement
|
2019-10-06 21:44:08 +02:00 |
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|
b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
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|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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|
|
edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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|
b39e7feae6
|
(v0.7.1.9090) factor levels of mdr_tb
|
2019-09-26 21:58:06 +02:00 |
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|
b9f01d686e
|
(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
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|
|
99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
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|
04cd0d25db
|
(v0.7.1.9087) small fix
|
2019-09-23 23:09:50 +02:00 |
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|
38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
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|
|
ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
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|
76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
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|
8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
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|
a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
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|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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|
66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
|
|
|
57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
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|
46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
|
|
|
40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
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|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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|
|
f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
|
|
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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|
b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
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|
06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
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|
c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
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|
88ee1b7268
|
(v0.7.1.9068) gramstain to freq()
|
2019-08-30 14:50:56 +02:00 |
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34a82d091e
|
(v0.7.1.9067) honor info
|
2019-08-28 17:12:48 +02:00 |
|
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|
e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
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|
248638ad91
|
(v0.7.1.9065) bug-drug fix
|
2019-08-27 22:41:09 +02:00 |
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|
f3276592b7
|
(v0.7.1.9064) bug-drug fix
|
2019-08-27 19:15:04 +02:00 |
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|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
|
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|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
|
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|
13d4fef801
|
(v0.7.1.9061) mo_property improvement
|
2019-08-26 10:03:37 +02:00 |
|
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|
e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
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|
7c069145ac
|
(v0.7.1.9058) as.mo() improvement
|
2019-08-20 11:40:54 +02:00 |
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|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
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|
920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
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|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
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|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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|
c44c5e3913
|
(v0.7.1.9037) CI and global env fix
|
2019-08-12 15:34:49 +02:00 |
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|
bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
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|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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|
3f5828e74a
|
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
|
2019-08-09 23:45:26 +02:00 |
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|
6598c5615d
|
(v0.7.1.9033) 5000 new fungi
|
2019-08-09 23:22:10 +02:00 |
|
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|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
|
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
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|
22a206ffd8
|
(v0.7.1.9030) eucast_rules() fix
|
2019-08-08 15:52:07 +02:00 |
|
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|
f67c739892
|
(v0.7.1.9029) unit test
|
2019-08-07 18:56:14 +02:00 |
|
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|
bfa92eb166
|
(v0.7.1.9028) predict update
|
2019-08-07 15:58:32 +02:00 |
|
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|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
|
|
14c47da656
|
(v0.7.1.9026) NAMESPACE fix
|
2019-08-06 15:57:51 +02:00 |
|
|
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
|
|
85b62aaf8f
|
(v0.7.1.9023) wrong percentage in as.mo()
|
2019-08-04 17:41:12 +02:00 |
|
|
|
643c5ed807
|
(v0.7.1.9022) CI fix for codecov
|
2019-08-04 11:33:56 +02:00 |
|
|
|
d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
|
|
|
4f3ef53c78
|
(v0.7.1.9020) CI fix 2
|
2019-08-03 21:51:08 +02:00 |
|
|
|
a6606d334c
|
(v0.7.1.9019) CI fix
|
2019-07-30 19:20:13 +02:00 |
|
|
|
2a62c3d62a
|
(v0.7.1.9018) deps
|
2019-07-30 13:12:40 +02:00 |
|
|
|
ec0ca20dee
|
(v0.7.1.9017) deps
|
2019-07-29 21:20:26 +02:00 |
|
|
|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
|
|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
|
|
|
9ac5a34b36
|
(v0.7.1.9014) MO codes update
|
2019-07-16 16:14:11 +02:00 |
|
|
|
c652c6913f
|
(v0.7.1.9013) guess_mo_ab speed improvement
|
2019-07-11 13:39:18 +02:00 |
|
|
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
|
|
b452de2fe4
|
(v0.7.1.9010) eucast informative text in verbose mode
|
2019-07-09 13:36:03 +02:00 |
|
|
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
|
|
d9e257f8db
|
(v0.7.1.9008) ab update
|
2019-07-04 19:08:18 +02:00 |
|
|
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
|
|
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
|
|
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
|
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
|
|
6013fbefae
|
(v0.7.1.9003) website update
|
2019-06-23 21:35:17 +02:00 |
|
|
|
f2d7a19118
|
(v0.7.1.9002) website update
|
2019-06-23 17:44:36 +02:00 |
|
|
|
278244140c
|
(v0.7.0.9015) vignette fix
|
2019-06-22 21:33:13 +02:00 |
|
|
|
b94638d53e
|
(v0.7.0.9014) unit tests
|
2019-06-22 20:14:06 +02:00 |
|
|
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
|
|
409397a337
|
(v0.7.0.9012) unit test
|
2019-06-18 19:28:26 +02:00 |
|
|
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
|
|
980be2b22d
|
(v0.7.0.9009) global note
|
2019-06-13 16:40:35 +02:00 |
|
|
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
|
|
699e87ab4a
|
(v0.7.0.9007) renamed notes fix
|
2019-06-12 16:08:20 +02:00 |
|
|
|
44ab53128e
|
(v0.7.0.9006) ab algorithm fix for ATC codes
|
2019-06-11 15:31:32 +02:00 |
|
|
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
|
|
f6c47c8c88
|
(v0.7.0.9004) pkgdown update
|
2019-06-09 08:57:54 +02:00 |
|
|
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
|
|
f50d3a5ba1
|
(v0.7.0.9002) scale fix
|
2019-06-08 15:00:28 +02:00 |
|
|
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
|
|
04c75e8e36
|
(v0.7.0.9000) new dev version
|
2019-06-03 20:52:24 +02:00 |
|
|
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
|
|
702da574c0
|
website update
|
2019-06-02 19:50:22 +02:00 |
|
|
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
|
|
8de0495008
|
(v0.6.1.9052) website update
|
2019-06-01 21:28:18 +02:00 |
|
|
|
5608b27c7c
|
(v0.6.1.9051) support staged install
|
2019-06-01 20:54:56 +02:00 |
|
|
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
|
|
a665612cb8
|
(v0.6.1.9049) data creation fix
|
2019-05-31 21:20:16 +02:00 |
|
|
|
4bac768557
|
(v0.6.1.9048) data creation fox
|
2019-05-31 21:01:14 +02:00 |
|
|
|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
|
|
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
|
|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
|
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
|
|
|
1f8ee3ec3e
|
(v0.6.1.9043) age doc fix
|
2019-05-30 08:51:38 +02:00 |
|
|
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
|
|
62e6f41961
|
website update
|
2019-05-29 00:36:48 +02:00 |
|
|
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
|
|
|
7e0e171512
|
website update
|
2019-05-23 19:39:07 +02:00 |
|
|
|
4bf6a06935
|
website update
|
2019-05-23 18:53:18 +02:00 |
|
|
|
3688fcaabf
|
doc fix
|
2019-05-23 17:59:43 +02:00 |
|
|
|
bbf8b611e3
|
doc fix
|
2019-05-23 17:35:58 +02:00 |
|
|
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
|
|
07d26cd485
|
faster determination of abx
|
2019-05-20 19:12:41 +02:00 |
|
|
|
6eb08a2ea3
|
new git flow to repository
|
2019-05-20 14:16:53 +02:00 |
|
|
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
|
|
b0033dae1b
|
website update
|
2019-05-17 20:22:04 +02:00 |
|
|
|
c3ae6b7699
|
freq fix
|
2019-05-17 09:09:18 +02:00 |
|
|
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
|
|
|
f6bf54b37d
|
documentation fix
|
2019-05-13 20:16:51 +02:00 |
|
|
|
2ea0c93e44
|
documentation fix
|
2019-05-13 16:35:48 +02:00 |
|
|
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
|
|
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
|
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
|
|
|
fcc77164e9
|
mdro fix
|
2019-05-11 23:30:10 +02:00 |
|
|
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
|
|
461eec9bac
|
cfta streptococci, codecov.yml
|
2019-04-09 14:59:17 +02:00 |
|
|
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
|
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
|
|
429814c29b
|
v0.6.0
|
2019-03-27 11:22:36 +01:00 |
|
|
|
8a1d384d9c
|
ci fixes
|
2019-03-26 15:34:04 +01:00 |
|
|
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
|
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
|
|
3e37a0775b
|
ci
|
2019-03-15 19:58:41 +01:00 |
|
|
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
|
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
|
|
|
b319b89750
|
WHONET fix
|
2019-03-09 08:21:00 +01:00 |
|
|
|
0c0c6e289b
|
small as.mo fix
|
2019-03-06 14:39:02 +01:00 |
|
|
|
5c7a061a5d
|
filter_ab_class fix
|
2019-03-06 09:32:48 +01:00 |
|
|
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
|
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
|
|
c5efb272fd
|
mo_source improvement
|
2019-03-01 09:34:04 +01:00 |
|
|
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
|
|
54162522bd
|
age_groups fix
|
2019-02-27 11:36:12 +01:00 |
|
|
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
|
|
|
c506d2893b
|
as.mo improvements
|
2019-02-25 15:52:32 +01:00 |
|
|
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
|
|
1a6314769b
|
as.mo improvement
|
2019-02-23 16:02:31 +01:00 |
|
|
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
|
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
|
|
13120f465f
|
website update
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2019-02-20 13:57:23 +01:00 |
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8dc027309e
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website update
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2019-02-20 10:38:24 +01:00 |
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fb1fc3686c
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Catalogue of life
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2019-02-20 00:04:48 +01:00 |
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54f8258f8c
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Catalogue of Life, replaces ITIS
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2019-02-18 02:33:37 +01:00 |
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9209787a53
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SPSS tutorial
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2019-02-14 15:18:17 +01:00 |
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efb2af9e3a
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benchmarks plots
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2019-02-14 10:23:51 +01:00 |
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76ed26d27e
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resistance predict update
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2019-02-11 10:27:10 +01:00 |
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c56b179857
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as.rsi warning, site update
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2019-02-09 22:16:24 +01:00 |
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ed30312048
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mo codes for WHONET
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2019-02-08 16:06:54 +01:00 |
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3d3366faf7
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is.rsi.eligible update
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2019-02-04 18:04:29 +01:00 |
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587e00b7be
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is.rsi.eligible update
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2019-02-04 12:24:07 +01:00 |
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0b3dc0231f
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freq fix
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2019-01-30 16:00:55 +01:00 |
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bb7c9cfefe
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website update
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2019-01-29 21:25:16 +01:00 |
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3efb54d016
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freq update
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2019-01-29 20:20:09 +01:00 |
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6aae206320
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WHONET/EARS-Net support
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2019-01-29 00:06:50 +01:00 |
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f6336fdd89
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quasiquotation for freq()
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2019-01-28 11:20:32 +01:00 |
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e76961a66b
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less deps
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2019-01-27 19:30:40 +01:00 |
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a2d3ea280a
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text updates
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2019-01-27 13:55:23 +01:00 |
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18b75356a9
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re-add atc_ddd and atc_groups
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2019-01-27 13:33:43 +01:00 |
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6ec940bc75
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atc_ functions
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2019-01-27 10:53:59 +01:00 |
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b39055c018
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deprecated fix
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2019-01-27 00:33:58 +01:00 |
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f836722269
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atc_ functions
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2019-01-26 23:22:56 +01:00 |
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f4ff98b470
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WHO update, antibiotics update
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2019-01-25 13:18:41 +01:00 |
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46dcc7e2e8
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set_mo_source
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2019-01-21 15:53:01 +01:00 |
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c6c3088e9f
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select() fix for freq
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2019-01-17 12:08:04 +01:00 |
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8db87a15e9
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fixes
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2019-01-15 16:38:54 +01:00 |
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046d195064
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resistance predict
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2019-01-15 12:45:24 +01:00 |
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cda7087722
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website update
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2019-01-12 19:31:30 +01:00 |
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5aad26035c
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edited g.test
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2019-01-12 11:06:58 +01:00 |
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641d866db2
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guess_ab_col, benchmarks
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2019-01-11 20:37:23 +01:00 |
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193a2d2863
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EUCAST update, as.mo bugfix for empty vlaues
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2019-01-08 16:23:45 +01:00 |
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bc15f660d6
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guess_ab()
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2019-01-06 20:23:49 +01:00 |
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2c798547bf
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language
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2019-01-05 21:40:04 +01:00 |
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6652f7d82b
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fix warnings
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2019-01-04 09:49:42 +01:00 |
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6b2d464f8c
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big website update, licence txt update
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2019-01-02 23:24:07 +01:00 |
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4255707cb7
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website update
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2018-12-31 14:30:06 +01:00 |
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154fec27dd
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website update
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2018-12-31 12:03:35 +01:00 |
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2e4d703338
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eucast rules fix, 1st isolate fix, website update
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2018-12-31 01:48:53 +01:00 |
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df6b334c6f
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website update
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2018-12-30 10:27:28 +01:00 |
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92a32b62a7
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new website, freq updates
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2018-12-29 22:24:19 +01:00 |
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