Commit Graph

300 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends d22834c5b8 (v0.8.0.9029) cleanup 2019-11-10 15:50:18 +01:00
dr. M.S. (Matthijs) Berends 54b6322056 (v0.8.0.9028) examples fix 2019-11-10 13:17:20 +01:00
dr. M.S. (Matthijs) Berends 59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
dr. M.S. (Matthijs) Berends 228a4245cb (v0.8.0.9026) appveyor fix 2019-11-10 09:26:25 +01:00
dr. M.S. (Matthijs) Berends a8c48cb2d7 (v0.8.0.9025) appveyor fix 2019-11-10 09:21:43 +01:00
dr. M.S. (Matthijs) Berends 07f945de53 (v0.8.0.9024) appveyor fix 2019-11-10 09:04:18 +01:00
dr. M.S. (Matthijs) Berends e252f68cdb (v0.8.0.9023) appveyor fix 2019-11-09 17:13:31 +01:00
dr. M.S. (Matthijs) Berends 32e3a98967 (v0.8.0.9022) update vignettes 2019-11-09 16:37:41 +01:00
dr. M.S. (Matthijs) Berends ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
dr. M.S. (Matthijs) Berends e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
dr. M.S. (Matthijs) Berends be9a3e6b12 (v0.8.0.9016) unit test update 2019-11-05 23:07:05 +01:00
dr. M.S. (Matthijs) Berends d19c44a25f (v0.8.0.9015) unit test update 2019-11-05 22:42:00 +01:00
dr. M.S. (Matthijs) Berends a1fd2cd98a (v0.8.0.9014) unit test update 2019-11-05 22:23:45 +01:00
dr. M.S. (Matthijs) Berends 2560aa1a53 (v0.8.0.9013) unit test update 2019-11-05 21:52:58 +01:00
dr. M.S. (Matthijs) Berends 5345d2759a (v0.8.0.9012) mdro improvement 2019-11-05 11:28:52 +01:00
dr. M.S. (Matthijs) Berends fe606e287b (v0.8.0.9011) col guess update 2019-11-04 12:08:08 +01:00
dr. M.S. (Matthijs) Berends 9060233953 (v0.8.0.9010) mdro bug fix 2019-11-04 11:35:34 +01:00
dr. M.S. (Matthijs) Berends 0bb531f3e0 (v0.8.0.9009) unit test 2019-11-03 22:41:29 +01:00
dr. M.S. (Matthijs) Berends 29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
dr. M.S. (Matthijs) Berends 09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
dr. M.S. (Matthijs) Berends 7ff2ad8188 (v0.8.0.9006) small typos 2019-10-27 00:31:59 +02:00
dr. M.S. (Matthijs) Berends 412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
dr. M.S. (Matthijs) Berends d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
dr. M.S. (Matthijs) Berends c01dc8a5b7 (v0.8.0.9003) printing fix for AB columns 2019-10-23 15:44:11 +02:00
dr. M.S. (Matthijs) Berends 3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
dr. M.S. (Matthijs) Berends 666126cd5e (v0.8.0.9001) guideline text on as.rsi() 2019-10-21 14:12:28 +02:00
dr. M.S. (Matthijs) Berends 1b8e2366f7 (v0.8.0.9000) website update 2019-10-16 22:47:48 +02:00
dr. M.S. (Matthijs) Berends 10e6b225e7 (v0.7.1.9107) v0.8.0 2019-10-15 14:35:23 +02:00
dr. M.S. (Matthijs) Berends 2c0f3534bf (v0.7.1.9106) v0.8.0 2019-10-13 09:31:58 +02:00
dr. M.S. (Matthijs) Berends 1736fb62d6 (v0.7.1.9105) another try 2019-10-12 10:08:55 +02:00
dr. M.S. (Matthijs) Berends 2eb4a42f3d (v0.7.1.9104) vignette fix 2019-10-12 09:15:27 +02:00
dr. M.S. (Matthijs) Berends b2a08d056b (v0.7.1.9103) add lintr to CI 2019-10-11 19:16:49 +02:00
dr. M.S. (Matthijs) Berends 00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
dr. M.S. (Matthijs) Berends 59af355a89 (v0.7.1.9101) NEWS update, fix authors 2019-10-09 10:52:19 +02:00
dr. M.S. (Matthijs) Berends c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
dr. M.S. (Matthijs) Berends 5dbff3e170 (v0.7.1.9098) mdro() unit test fix 2019-10-07 15:12:42 +02:00
dr. M.S. (Matthijs) Berends f479dfce60 (v0.7.1.9097) mdro() examples fix 2019-10-07 14:57:27 +02:00
dr. M.S. (Matthijs) Berends 4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
dr. M.S. (Matthijs) Berends 1e260d85c8 (v0.7.1.9095) get_column_abx() fix 2019-10-06 22:19:26 +02:00
dr. M.S. (Matthijs) Berends 3d5692219e (v0.7.1.9094) get_column_abx() improvement 2019-10-06 21:44:08 +02:00
dr. M.S. (Matthijs) Berends b6653a620a (v0.7.1.9093) as.ab() fix 2019-10-06 21:07:38 +02:00
dr. M.S. (Matthijs) Berends 8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
dr. M.S. (Matthijs) Berends edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
dr. M.S. (Matthijs) Berends b39e7feae6 (v0.7.1.9090) factor levels of mdr_tb 2019-09-26 21:58:06 +02:00
dr. M.S. (Matthijs) Berends b9f01d686e (v0.7.1.9089) eucast file update 2019-09-25 22:37:40 +02:00
dr. M.S. (Matthijs) Berends 99d0fe76dd (v0.7.1.9088) bug_drug improvement 2019-09-25 15:43:22 +02:00
dr. M.S. (Matthijs) Berends 04cd0d25db (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
dr. M.S. (Matthijs) Berends 38336d7408 (v0.7.1.9086) small fix 2019-09-23 23:00:18 +02:00
dr. M.S. (Matthijs) Berends ad5f211a8f (v0.7.1.9085) Salmonella fix 2019-09-23 21:24:37 +02:00
dr. M.S. (Matthijs) Berends 76dc948067 (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
dr. M.S. (Matthijs) Berends 8ce252fbc5 (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
dr. M.S. (Matthijs) Berends a8c6b8f9c4 (v0.7.1.9082) CI fix 2019-09-23 14:37:24 +02:00
dr. M.S. (Matthijs) Berends 64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
dr. M.S. (Matthijs) Berends 66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
dr. M.S. (Matthijs) Berends 57b0bd92a0 (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
dr. M.S. (Matthijs) Berends 46b61e9a70 (v0.7.1.9078) unit tests 2019-09-20 14:50:02 +02:00
dr. M.S. (Matthijs) Berends 40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
dr. M.S. (Matthijs) Berends 3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
dr. M.S. (Matthijs) Berends e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
dr. M.S. (Matthijs) Berends f553a08a7b (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
dr. M.S. (Matthijs) Berends 398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
dr. M.S. (Matthijs) Berends cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
dr. M.S. (Matthijs) Berends b5d2a08401 (v0.7.1.9071) p_symbol() 2019-09-03 09:47:39 +02:00
dr. M.S. (Matthijs) Berends 06b6266366 (v0.7.1.9070) na.rm for age(), age_groups() 2019-09-02 15:17:41 +02:00
dr. M.S. (Matthijs) Berends c7be72f0ce (v0.7.1.9069) documentation update 2019-09-01 13:16:57 +02:00
dr. M.S. (Matthijs) Berends 88ee1b7268 (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
dr. M.S. (Matthijs) Berends 34a82d091e (v0.7.1.9067) honor info 2019-08-28 17:12:48 +02:00
dr. M.S. (Matthijs) Berends e2b78fa428 (v0.7.1.9066) bug-drug fix 2019-08-27 23:00:00 +02:00
dr. M.S. (Matthijs) Berends 248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
dr. M.S. (Matthijs) Berends f3276592b7 (v0.7.1.9064) bug-drug fix 2019-08-27 19:15:04 +02:00
dr. M.S. (Matthijs) Berends 93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends 7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends 13d4fef801 (v0.7.1.9061) mo_property improvement 2019-08-26 10:03:37 +02:00
dr. M.S. (Matthijs) Berends e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
dr. M.S. (Matthijs) Berends 7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
dr. M.S. (Matthijs) Berends 04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
dr. M.S. (Matthijs) Berends 920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
dr. M.S. (Matthijs) Berends 7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends 5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
dr. M.S. (Matthijs) Berends c44c5e3913 (v0.7.1.9037) CI and global env fix 2019-08-12 15:34:49 +02:00
dr. M.S. (Matthijs) Berends bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends 3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
dr. M.S. (Matthijs) Berends 6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
dr. M.S. (Matthijs) Berends 6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends 22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
dr. M.S. (Matthijs) Berends f67c739892 (v0.7.1.9029) unit test 2019-08-07 18:56:14 +02:00
dr. M.S. (Matthijs) Berends bfa92eb166 (v0.7.1.9028) predict update 2019-08-07 15:58:32 +02:00
dr. M.S. (Matthijs) Berends 90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends 14c47da656 (v0.7.1.9026) NAMESPACE fix 2019-08-06 15:57:51 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends 85b62aaf8f (v0.7.1.9023) wrong percentage in as.mo() 2019-08-04 17:41:12 +02:00
dr. M.S. (Matthijs) Berends 643c5ed807 (v0.7.1.9022) CI fix for codecov 2019-08-04 11:33:56 +02:00
dr. M.S. (Matthijs) Berends d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
dr. M.S. (Matthijs) Berends 4f3ef53c78 (v0.7.1.9020) CI fix 2 2019-08-03 21:51:08 +02:00
dr. M.S. (Matthijs) Berends a6606d334c (v0.7.1.9019) CI fix 2019-07-30 19:20:13 +02:00
dr. M.S. (Matthijs) Berends 2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
dr. M.S. (Matthijs) Berends ec0ca20dee (v0.7.1.9017) deps 2019-07-29 21:20:26 +02:00
dr. M.S. (Matthijs) Berends b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00