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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 07:26:13 +01:00
Commit Graph

1291 Commits

Author SHA1 Message Date
3396236eef unit test fixes 2023-02-13 16:56:25 +01:00
b6d2b1398d Fix for antibiogram() in R <=3.4 2023-02-13 10:21:43 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
68abb00c59 add include_screening to as.sir() 2023-02-12 15:09:54 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
822e9de82c pm update, unit test fix? 2023-02-08 13:48:06 +01:00
4a54d59f70 tinytest 2023-02-06 14:36:31 +01:00
75a4c1ef3e fixes2 2023-02-06 14:34:38 +01:00
f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00
89a577805f prelim fix for g.test 2023-01-30 12:26:48 +01:00
126afb01a4 unit tests 2 2023-01-24 16:31:00 +01:00
c0d8888ab7 unit tests 2023-01-24 16:09:48 +01:00
7b00b4f34a unit tests 2023-01-24 14:52:15 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
af139a3c82
unit test fix for old R versions 2023-01-21 23:53:31 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
24b12024ce unit test fix 2023-01-20 09:45:03 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
33f269e2f4 contrib update 2023-01-12 23:16:05 +01:00
51906d6f97 no overwriting taxonomy when adding microorganisms 2023-01-12 11:33:28 +01:00
1029aa2fdc algorithm improvement 2023-01-07 14:53:14 +01:00
08fe5a88c0 documentation 2023-01-07 01:54:46 +01:00
2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
cf16bc7de1 unit tests 2023-01-06 13:45:20 +01:00
86e28bafce add mo_pathogenicity 2023-01-06 13:35:37 +01:00
4801a6067e unit tests 2023-01-06 11:22:02 +01:00
8a0a0d4682 unit tests 2023-01-06 10:08:25 +01:00
268ec31d92 unit tests 2023-01-05 18:21:48 +01:00
5361c0b2a0 limit GitHub runners 2023-01-05 15:41:07 +01:00
51c0f0814e new setup unit tests 2023-01-05 15:03:18 +01:00
a98d0d75ea styler dep 2023-01-05 14:46:44 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
77d9cf1936 documentation 2022-12-30 13:02:37 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00
1db74e86cd good start-up practice 2022-12-29 16:23:57 +01:00