dr. M.S. (Matthijs) Berends
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
dr. M.S. (Matthijs) Berends
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
dr. M.S. (Matthijs) Berends
efdf5a3dc5
prevent dplyr:row_number warning
2018-05-31 14:19:25 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends
0b22ddef8e
more unit tests
2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
b7f29aa748
Update first_isolates.R
2018-03-29 15:15:31 +02:00
dr. M.S. (Matthijs) Berends
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends
502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends
e4b371d30a
add MIC values
...
add badges to readme
2018-03-13 11:57:30 +01:00
dr. M.S. (Matthijs) Berends
34e70a65ed
added septic_patients
2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends
6fa05fe33b
first isolates
2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends
be51a95448
rename columns
2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
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MS Berends