15 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	acb534102b	new species groups, updated clinical breakpoints	2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends	2d97cca6d9	fix `reference_df` endless loop	2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends	f065945d7b	Update clinical breakpoints and fix some `as.mo()` bugs (#117) ... * Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115 * docs * implement ecoffs * unit tests	2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends	02322ac2ee	Fix PK/PD breakpoints	2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends	ed70f95380	Fix clinical breakpoints	2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends	dad25302f2	make `rsi` work in more cases, documentation update	2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends	68abb00c59	add include_screening to `as.sir()`	2023-02-12 15:09:54 +01:00
dr. M.S. (Matthijs) Berends	bc434db835	bring back `antibiogram()`, without deps	2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends	70a7ba0206	fix first isolate	2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends	1a0dc4bf46	revert back to pre-antibiogram	2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends	9e99e66f01	use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi	2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends	830c67f1bf	documentation, unit tests	2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends	eef00069fd	add all options to documentation	2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends	19fd0ef121	sort sir history	2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends	98e62c9af2	Replace RSI with SIR	2023-01-21 23:47:20 +01:00