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Author SHA1 Message Date
MS Berends f1dbed6fcc Update clipboard.R 2018-03-29 14:56:40 +02:00
MS Berends e2a5202b69 Update test-clipboard.R 2018-03-29 14:47:52 +02:00
MS Berends 258e080756 Update test-clipboard.R 2018-03-29 14:26:26 +02:00
MS Berends 136272cb71 Update clipboard.R 2018-03-29 14:16:42 +02:00
MS Berends 9f943708cc Update .travis.yml 2018-03-29 14:07:54 +02:00
MS Berends fd04df5f9d Update clipboard.R 2018-03-29 13:23:02 +02:00
MS Berends dbec56c68a Update .travis.yml 2018-03-29 13:16:08 +02:00
MS Berends 339b445a30 Update test-clipboard.R 2018-03-29 13:12:49 +02:00
MS Berends 2f4823f7a7 Update clipboard.R 2018-03-29 13:10:55 +02:00
MS Berends ff90188f41 Update .travis.yml 2018-03-29 12:56:03 +02:00
dr. M.S. (Matthijs) Berends 1b3cc41c08 fix tests 2018-03-27 17:58:46 +02:00
dr. M.S. (Matthijs) Berends 6f7730dcaa add tests using testthat 2018-03-27 17:43:42 +02:00
MS Berends c26839b08e Test on Linux and Mac 2018-03-23 14:59:50 +01:00
MS Berends 9637b43357 Remove Windows only function 2018-03-23 14:59:02 +01:00
MS Berends 39eb307968 Remove Windows only function 2018-03-23 14:58:46 +01:00
MS Berends 1b3daebc84 Remove Windows only function 2018-03-23 14:52:56 +01:00
dr. M.S. (Matthijs) Berends 53464ff1c8 - For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends e1e19af625 README update 2018-03-22 13:45:04 +01:00
dr. M.S. (Matthijs) Berends fe803f7279 use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends c765f424ab typo 2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends dd2517ecb7 - Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate` 
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
 2018-03-19 20:39:23 +01:00
MS Berends 2db25b3b38 Use R 3.2 to make covr work 2018-03-19 12:49:22 +01:00
dr. M.S. (Matthijs) Berends 502a44eb25 - Added new function guess_bactid to determine the ID of a microorganism based on genus/species 
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
 2018-03-19 12:43:22 +01:00
ceefluz 0fec64a240 Add ORCID identifier 2018-03-19 10:28:35 +01:00
dr. M.S. (Matthijs) Berends 6c67c8f6c1 examples edit v0.1.1 2018-03-14 09:58:58 +01:00
dr. M.S. (Matthijs) Berends 46db3f7b13 import from graphics 2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends 53959d40c7 typo in examples 2018-03-13 14:40:52 +01:00
dr. M.S. (Matthijs) Berends 04fc3573ec add barplots 2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends e4b371d30a add MIC values 
add badges to readme
 2018-03-13 11:57:30 +01:00
ceefluz 4ea0333349 Minor text changes for DDD definition 2018-03-13 11:48:30 +01:00
MS Berends aae393f2a9 Update .Rbuildignore 2018-03-11 21:20:28 +01:00
MS Berends 692116b4dc Create .travis.yml 2018-03-11 21:00:11 +01:00
dr. M.S. (Matthijs) Berends 34e70a65ed added septic_patients 2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends 98b2b99913 new atc codes 2018-02-26 16:06:49 +01:00
dr. M.S. (Matthijs) Berends 8a603876d2 misc 2018-02-26 15:53:09 +01:00
dr. M.S. (Matthijs) Berends 915d4db23b add rows to summary 2018-02-26 14:37:40 +01:00
dr. M.S. (Matthijs) Berends 6fa05fe33b first isolates 2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends d36a391747 export first_isolate 2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends be51a95448 rename columns 2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends 3f859210d5 new date for push test 2018-02-22 22:04:22 +01:00
dr. M.S. (Matthijs) Berends 11683b082e EUCAST man pages 2018-02-22 21:42:01 +01:00
dr. M.S. (Matthijs) Berends 10380bcfae add NEWS 2018-02-22 21:37:10 +01:00
dr. M.S. (Matthijs) Berends d8da8daf9a First CRAN submission edits v0.1.0 2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends 77194527b5 readme 2018-02-21 12:21:34 +01:00
MS Berends 942c41ae9c Update README.md 2018-02-21 12:19:42 +01:00
MS Berends 3cccf9df3f Update README.md 2018-02-21 12:15:04 +01:00
MS Berends 57d0314780 Update README.md 2018-02-21 12:14:17 +01:00
MS Berends 86c9f2913d Update README.md 2018-02-21 12:11:07 +01:00
dr. M.S. (Matthijs) Berends ab0503f8b8 abname, logo 2018-02-21 12:10:00 +01:00
dr. M.S. (Matthijs) Berends 62304dc23f first commit 2018-02-21 11:52:31 +01:00