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mirror of https://github.com/msberends/AMR.git synced 2025-04-19 23:53:51 +02:00

63 Commits

Author SHA1 Message Date
bb110646db
(v2.1.1.9223) allow + ab 2025-03-20 22:56:32 +01:00
79f56ad8a4
(v2.1.1.9220) unit test 2025-03-19 16:13:43 +01:00
287e361a54
(v2.1.1.9218) Fix unit tests 2025-03-19 16:05:24 +01:00
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors 2025-03-18 16:35:22 +01:00
32024e597a
(v2.1.1.9191) unit tests 2025-03-10 12:16:45 +01:00
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram() 2025-03-09 10:41:11 +01:00
245483e41c
(v2.1.1.9188) fix antibiogram plot 2025-03-07 23:01:25 +01:00
b67613ce08
(v2.1.1.9187) WISCA fix 2025-03-07 22:27:21 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram 2025-02-26 13:27:20 +01:00
b10989f431
(v2.1.1.9156) fix for knitr in WISCA 2025-02-23 19:18:42 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00
ef02f4a7f2
(v2.1.1.9151) update readme 2025-02-15 20:53:12 +01:00
9650545d6e
(v2.1.1.9150) unit tests 2025-02-15 13:40:51 +01:00
9d636983ac
(v2.1.1.9148) scale fix, antibiogram fix 2025-02-15 12:38:29 +01:00
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values 2025-02-14 14:16:46 +01:00
2171f05951
(v2.1.1.9143) unit tests 2025-02-07 19:18:55 +01:00
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg 2025-02-07 18:01:22 +01:00
baea4323c7
(v2.1.1.9140) WISCA fix 2025-02-05 20:48:35 +01:00
700522b466
(v2.1.1.9135) documentation fix 2025-01-28 15:16:55 +01:00
e740aa691b
(v2.1.1.9134) add Gamma to WISCA documentation 2025-01-27 23:11:10 +01:00
2561494e06
(v2.1.1.9133) update math formulae 2025-01-27 22:43:35 +01:00
1149360b27
(v2.1.1.9129) unit test fix 2025-01-27 16:17:03 +01:00
7accf6ff13
(v2.1.1.9127) unit tests 2025-01-27 10:46:43 +01:00
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper 2025-01-26 23:01:17 +01:00
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors' 2025-01-17 12:09:39 +01:00
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
35f095cceb fixes #148 2024-04-23 09:34:05 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
92029c9e95 remove note 2023-02-24 10:31:36 +01:00
049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
a84101db08 N for only 1 AB in 2023-02-22 16:26:13 +01:00
551aaf6517 auto-remove missing ABs in antibiogram() 2023-02-22 16:00:52 +01:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
e890360986 website syntax update 2023-02-17 11:39:00 +01:00