 dr. M.S. (Matthijs) Berends
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bc15f660d6
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guess_ab()
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2019-01-06 20:23:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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0205b6178d
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guess_mo deprecation
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2019-01-06 16:40:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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2c798547bf
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language
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2019-01-05 21:40:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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6652f7d82b
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fix warnings
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2019-01-04 09:49:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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80ea555663
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guess_ab
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2019-01-03 23:56:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b2d464f8c
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big website update, licence txt update
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2019-01-02 23:24:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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68baf058cd
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website update
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2018-12-31 10:35:26 +01:00 |
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dr. M.S. (Matthijs) Berends
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2e4d703338
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eucast rules fix, 1st isolate fix, website update
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2018-12-31 01:48:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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92a32b62a7
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new website, freq updates
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2018-12-29 22:24:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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0b8084871d
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dplyr 0.8.0 support, fixes #7
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2018-12-22 22:39:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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b937662a97
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limits for scale_y_percent - Licence update
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2018-12-16 22:45:12 +01:00 |
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dr. M.S. (Matthijs) Berends
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bd5f46d734
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age_groups fix
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2018-12-16 09:50:14 +01:00 |
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dr. M.S. (Matthijs) Berends
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2018d5b477
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age and age_groups
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2018-12-15 22:40:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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ecebc60bfd
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C stack error fix
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2018-12-14 11:44:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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857f565db0
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reorganised notes and warnings
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2018-12-14 10:52:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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dec4947103
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freq header fix for NAs
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2018-12-14 10:08:51 +01:00 |
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dr. M.S. (Matthijs) Berends
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e4737d3add
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date transformation fix for tibbles
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2018-12-14 09:31:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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7e5fe75a17
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small text fixes
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2018-12-14 07:48:12 +01:00 |
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dr. M.S. (Matthijs) Berends
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81af7be36e
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note about portions
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2018-12-14 07:23:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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01a6d56334
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add kingdom to mo_taxonomy
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2018-12-10 21:47:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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5ab7eb07bc
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keyab automatic
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2018-12-10 15:14:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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9478ab71be
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freq - decimals
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2018-12-10 10:13:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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8e8a9cd190
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AI improvements
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2018-12-07 12:04:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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74a7f4453b
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small CI fix
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2018-12-06 16:07:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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60fe98bbbd
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better as.mo handling
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2018-12-06 14:36:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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31e977937d
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fix for as.mo and freq
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2018-11-30 12:05:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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9ddf6dc530
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support A. species for as.mo, cleanup
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2018-11-24 20:25:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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63ba4b2980
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small error in freq
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2018-11-19 13:06:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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a8132922af
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unit test read.4d, unselecting freq cols
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2018-11-19 13:00:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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83c7da85ab
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unit tests
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2018-11-16 22:28:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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d22b7f00da
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unit tests
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2018-11-16 22:22:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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373e0cb32f
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unit test fail
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2018-11-16 21:57:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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4fcc2b409a
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MDRO update
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2018-11-16 20:50:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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fab64e6728
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read.4D improvements
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2018-11-15 12:42:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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5cb8f3cf72
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get_locale improvement
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2018-11-12 15:07:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b0f4ffbd4
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new kingdom
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2018-11-09 13:11:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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9be5e0318b
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freq: fix na.rm in groups
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2018-11-08 16:10:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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84e08f516a
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grouping var for freq
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2018-11-06 16:41:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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ee664f2a4c
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small fix
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2018-11-05 15:36:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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d15bb2ab3f
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read_4D
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2018-11-05 15:30:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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d07e9b904e
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new function get_locale
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2018-11-05 13:20:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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d0bc05e5b1
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speed improvement is.rsi.eligible
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2018-11-02 14:55:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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40a159e78d
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more unit tests
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2018-11-02 10:27:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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e601fd259a
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test syntax fix
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2018-11-01 20:50:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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5476fecc73
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eucast update
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2018-11-01 20:23:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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f7687557c9
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eucast updates
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2018-11-01 17:06:08 +01:00 |
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dr. M.S. (Matthijs) Berends
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9cd4ab928a
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speed improvement as.mo, freq title
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2018-10-31 12:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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1bf8dc2983
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as.mo speedup: assigned to namespace
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2018-10-29 17:26:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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707aa20a37
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fixes
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2018-10-23 14:59:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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7997de6a6d
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mdro and 1st isolate improvements
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2018-10-23 11:15:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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299c5bea43
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na freq, removed factors
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2018-10-23 09:42:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c56257da1
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freq - print title bold in markdown
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2018-10-22 13:06:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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c2a93b46db
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breaks param, tidyr dep change, freq markdown
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2018-10-22 12:32:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec15b82fd6
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param header for freq
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2018-10-19 21:52:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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86b03577a7
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fix for as.mo, added also_single_tested
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2018-10-19 13:53:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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032c0d51ef
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better verbose in EUCAST
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2018-10-19 00:57:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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b464dd524a
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new verbose
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2018-10-19 00:17:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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0ef91be3ac
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param rules for EUCAST
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2018-10-18 12:10:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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693f64bdbf
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new EUCAST rules: clinical breakpoints
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2018-10-17 17:32:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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d5a41de711
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parameter combine_IR
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2018-10-16 09:59:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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5b5b95a47b
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count_all and some fixes
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2018-10-12 16:35:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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e7d937d36e
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update NEWS
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2018-10-10 10:50:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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67521394f6
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more unit tests
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2018-10-09 15:41:44 +02:00 |
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dr. M.S. (Matthijs) Berends
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95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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6d761436f7
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benchmarks on readme and speed improvement for direct mo codes
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2018-10-01 16:26:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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ed17db0263
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renamed year columns to ref
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2018-10-01 14:44:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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3119a221e5
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authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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a6aa9e95fb
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completed old taxonomic names
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2018-09-28 20:13:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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768fe17324
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removed clipboard functions as it violated CRAN policies
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2018-09-28 16:05:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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2b0080995e
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speed improvement for as.mo, more old taxonomic names
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2018-09-27 23:23:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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450992baea
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new: 1680 old taxonomic names
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2018-09-25 16:44:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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5d80cef338
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added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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7680e4edd8
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add shortest and longest to freq for characters
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2018-09-17 09:42:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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db14781593
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add labels_rsi_count
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2018-09-16 22:11:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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b792a2754e
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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
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2018-09-16 16:43:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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b0ca49d68d
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small improvement for is.rsi.eligible, more unit tests
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2018-09-14 11:54:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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cf5711fb0b
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algorithm improvement
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2018-09-14 10:31:21 +02:00 |
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dr. M.S. (Matthijs) Berends
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d049ec9e69
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ggplot2_rsi fix
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2018-09-13 14:48:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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cb0d74a4f0
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support for French and Italian, added quote to freq
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2018-09-10 15:45:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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b83e6a9380
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algoritm improvement, removed all Catabacter except for C. hongkongensis
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2018-09-10 11:40:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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4816419f0c
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AI improvements for microorganisms
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2018-09-09 12:11:44 +02:00 |
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dr. M.S. (Matthijs) Berends
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936198372e
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translate CoNS
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2018-09-08 16:24:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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26f5be0033
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support for portuguese, language determination based on system
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2018-09-08 16:06:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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c5073f2fd1
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small fix for microorganisms data set
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2018-09-06 16:50:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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de36b0be23
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fix for empty values in mo_property
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2018-09-05 12:21:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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e39a9a8b05
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added mo_shortname
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2018-09-05 10:51:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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790bd1622d
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added vanA to vanE positive Enterococci
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2018-09-05 09:49:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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b388e3fee7
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Support for German and Spanish microorganism properties, cleanup
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2018-09-04 11:33:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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e25dd0e282
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fix for joins
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2018-09-03 10:04:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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75fe4d401f
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new MOs, cleanup
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2018-09-01 21:19:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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5965d3c794
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replaced bactid by mo
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2018-08-31 13:36:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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98ff131680
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support for older versions of ggplot2
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2018-08-29 16:39:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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d654444c8e
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re added nrow
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2018-08-29 16:35:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9e68e0a50
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ggplot_rsi example update, more unit tests
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2018-08-29 16:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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029157b3be
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163 new trade names, added ab_tradenames
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2018-08-29 12:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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972fc4f6c7
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ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
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2018-08-28 13:51:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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2acdb1981c
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atc and bactid functions, readme update
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2018-08-25 22:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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baaf4cc3e1
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few extra tests
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2018-08-24 14:18:38 +02:00 |