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mirror of https://github.com/msberends/AMR.git synced 2025-04-19 07:53:54 +02:00

1095 Commits

Author SHA1 Message Date
58d7aa8790
(v2.1.1.9199) fix eucast 2025-03-14 13:43:22 +01:00
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1 2025-03-14 10:10:35 +01:00
eafe9bd113
(v2.1.1.9197) Final fixes for vetmed 2025-03-13 15:51:58 +01:00
861331b1df
(v2.1.1.9196) fix eucast, unit tests 2025-03-13 15:38:39 +01:00
9aab129ea6
(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms 2025-03-13 14:30:14 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET 2025-03-12 16:24:38 +01:00
e1b7252ff6
(v2.1.1.9193) new antimicrobials for screening 2025-03-12 15:09:28 +01:00
067a8aca66
(v2.1.1.9192) fix fluoroquinolones and add bleomycin 2025-03-10 17:04:35 +01:00
32024e597a
(v2.1.1.9191) unit tests 2025-03-10 12:16:45 +01:00
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram() 2025-03-09 10:41:11 +01:00
c7af397edf
(v2.1.1.9189) Add the awesome Aislinn Cook 2025-03-07 23:25:50 +01:00
245483e41c
(v2.1.1.9188) fix antibiogram plot 2025-03-07 23:01:25 +01:00
b67613ce08
(v2.1.1.9187) WISCA fix 2025-03-07 22:27:21 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
e28dd86c43
(v2.1.1.9183) unit test for older R versions 2025-03-03 14:54:42 +01:00
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests 2025-03-03 12:59:27 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
22e66741cc
(v2.1.1.9160) cleanup 2025-02-26 20:28:33 +01:00
0c3ea4b538
(v2.1.1.9159) new approach as.ab() 2025-02-26 19:23:54 +01:00
122bca0f95
(v2.1.1.9158) updated as.ab 2025-02-26 13:32:16 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram 2025-02-26 13:27:20 +01:00
b10989f431
(v2.1.1.9156) fix for knitr in WISCA 2025-02-23 19:18:42 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00
226d10f546
(v2.1.1.9154) documentation fix 2025-02-22 22:07:56 +01:00
abb5602532
(v2.1.1.9153) mic plot fix 2025-02-22 21:26:38 +01:00
671d657fd8
(v2.1.1.9152) MIC plot fix 2025-02-18 08:07:02 +01:00
ef02f4a7f2
(v2.1.1.9151) update readme 2025-02-15 20:53:12 +01:00
9650545d6e
(v2.1.1.9150) unit tests 2025-02-15 13:40:51 +01:00
883fbe7cfe
(v2.1.1.9149) doc fix 2025-02-15 12:46:48 +01:00
9d636983ac
(v2.1.1.9148) scale fix, antibiogram fix 2025-02-15 12:38:29 +01:00
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values 2025-02-14 14:16:46 +01:00
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions 2025-02-13 19:47:57 +01:00
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic() 2025-02-11 08:48:37 +01:00
2171f05951
(v2.1.1.9143) unit tests 2025-02-07 19:18:55 +01:00
cc2bb151ab
(v2.1.1.9142) unit test fix 2025-02-07 19:03:02 +01:00
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg 2025-02-07 18:01:22 +01:00
baea4323c7
(v2.1.1.9140) WISCA fix 2025-02-05 20:48:35 +01:00
d84033bbcb
(v2.1.1.9139) unit test 2025-02-01 11:10:42 +01:00
6a206bed12
(v2.1.1.9138) unit tests 2025-01-31 23:06:45 +01:00
ecc4e25e75
(v2.1.1.9137) examples fix 2025-01-31 16:28:06 +01:00
22afd918e6
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement 2025-01-31 16:01:52 +01:00
700522b466
(v2.1.1.9135) documentation fix 2025-01-28 15:16:55 +01:00
e740aa691b
(v2.1.1.9134) add Gamma to WISCA documentation 2025-01-27 23:11:10 +01:00
9520977a10
(v2.1.1.9133) (v2.1.1.9132) unit test, final fixes 2025-01-27 22:09:16 +01:00
f03933940c
(v2.1.1.9131) implement testthat 2025-01-27 21:43:10 +01:00
1149360b27
(v2.1.1.9129) unit test fix 2025-01-27 16:17:03 +01:00
6efa317a81
(v2.1.1.9128) fix for bug-drug combinations 2025-01-27 11:51:40 +01:00
7accf6ff13
(v2.1.1.9127) unit tests 2025-01-27 10:46:43 +01:00
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper 2025-01-26 23:01:17 +01:00
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors' 2025-01-17 12:09:39 +01:00