2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
4a47e59e6f
fortify code with more tests
2018-04-03 11:08:31 +02:00
972e923484
testthat for macOS
2018-04-02 16:21:03 +02:00
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
cee64ef050
fix Travis
2018-04-02 15:03:22 +02:00
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
MS Berends
abcb4accbd
Update .travis.yml
2018-03-29 15:17:48 +02:00
MS Berends
b7f29aa748
Update first_isolates.R
2018-03-29 15:15:31 +02:00
MS Berends
2647dacc0a
add clipbaord support for Linux and macOS
2018-03-29 15:07:36 +02:00
MS Berends
f1dbed6fcc
Update clipboard.R
2018-03-29 14:56:40 +02:00
MS Berends
e2a5202b69
Update test-clipboard.R
2018-03-29 14:47:52 +02:00
MS Berends
258e080756
Update test-clipboard.R
2018-03-29 14:26:26 +02:00
MS Berends
136272cb71
Update clipboard.R
2018-03-29 14:16:42 +02:00
MS Berends
9f943708cc
Update .travis.yml
2018-03-29 14:07:54 +02:00
MS Berends
fd04df5f9d
Update clipboard.R
2018-03-29 13:23:02 +02:00
MS Berends
dbec56c68a
Update .travis.yml
2018-03-29 13:16:08 +02:00
MS Berends
339b445a30
Update test-clipboard.R
2018-03-29 13:12:49 +02:00
MS Berends
2f4823f7a7
Update clipboard.R
2018-03-29 13:10:55 +02:00
MS Berends
ff90188f41
Update .travis.yml
2018-03-29 12:56:03 +02:00
1b3cc41c08
fix tests
2018-03-27 17:58:46 +02:00
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
MS Berends
c26839b08e
Test on Linux and Mac
2018-03-23 14:59:50 +01:00
MS Berends
9637b43357
Remove Windows only function
2018-03-23 14:59:02 +01:00
MS Berends
39eb307968
Remove Windows only function
2018-03-23 14:58:46 +01:00
MS Berends
1b3daebc84
Remove Windows only function
2018-03-23 14:52:56 +01:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
e1e19af625
README update
2018-03-22 13:45:04 +01:00
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate`
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- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
MS Berends
2db25b3b38
Use R 3.2 to make covr work
2018-03-19 12:49:22 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
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- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
0fec64a240
Add ORCID identifier
2018-03-19 10:28:35 +01:00
6c67c8f6c1
examples edit
2018-03-14 09:58:58 +01:00
46db3f7b13
import from graphics
2018-03-13 15:40:10 +01:00
53959d40c7
typo in examples
2018-03-13 14:40:52 +01:00
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
e4b371d30a
add MIC values
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add badges to readme
2018-03-13 11:57:30 +01:00
4ea0333349
Minor text changes for DDD definition
2018-03-13 11:48:30 +01:00
MS Berends
aae393f2a9
Update .Rbuildignore
2018-03-11 21:20:28 +01:00
MS Berends
692116b4dc
Create .travis.yml
2018-03-11 21:00:11 +01:00
34e70a65ed
added septic_patients
2018-02-27 20:01:02 +01:00
98b2b99913
new atc codes
2018-02-26 16:06:49 +01:00
8a603876d2
misc
2018-02-26 15:53:09 +01:00
915d4db23b
add rows to summary
2018-02-26 14:37:40 +01:00
6fa05fe33b
first isolates
2018-02-26 14:06:31 +01:00
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
be51a95448
rename columns
2018-02-26 10:53:54 +01:00
3f859210d5
new date for push test
2018-02-22 22:04:22 +01:00
