155 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	7f981e7778	(v1.8.1.9013) add Toxoplasma	2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends	b84d647cac	(v1.8.1.9012) update prevalence of some genera	2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends	1b84564d36	(v1.8.1.9011) update prevalence of some genera	2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends	70a07bad39	(v1.8.1.9010) random when pkg not loaded	2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends	2c5bc73ed6	(v1.8.1.9009) random when pkg not loaded	2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends	58ed15e7ac	(v1.8.1.9008) website update	2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends	6de5375256	(v1.8.1.9007) website update	2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends	859224e9d0	(v1.8.1.9006) added EUCAST 2022 and CLSI 2022	2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends	680e8e7a41	(v1.8.1.9005) as.rsi() fix for EUCAST	2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends	d4e22069bc	(v1.8.1.9004) fix for table() on MICs	2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends	1c891cc90c	(v1.8.1.9003) set_mo_source() fix	2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends	152db9d1b5	(v1.8.1.9002) fix for table() on MICs	2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends	4754848e96	(v1.8.1.9001) update unit tests, fixes #53	2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends	641b88c814	website update	2022-03-27 09:37:55 +02:00
dr. M.S. (Matthijs) Berends	7b0f1596bd	(v1.8.0.9010) as.mo improvement	2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends	0fb9a1b194	prerelease 1.8.1	2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends	45e9546538	prerelease 1.8.1 ... Merge branch 'development' of https://github.com/msberends/AMR into development # Conflicts: # docs/articles/AMR.html # docs/articles/AMR_files/figure-html/disk_plots-1.png # docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png # docs/articles/AMR_files/figure-html/mic_plots-1.png # docs/articles/AMR_files/figure-html/mic_plots-2.png # docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png # docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png # docs/articles/AMR_files/figure-html/plot 1-1.png # docs/articles/AMR_files/figure-html/plot 3-1.png # docs/articles/AMR_files/figure-html/plot 4-1.png # docs/articles/AMR_files/figure-html/plot 5-1.png # docs/articles/EUCAST.html # docs/articles/MDR.html # docs/articles/PCA.html # docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png # docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png # docs/articles/SPSS.html # docs/articles/WHONET.html # docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png # docs/articles/benchmarks.html # docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png # docs/articles/datasets.html # docs/articles/resistance_predict.html # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png # docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png # docs/articles/welcome_to_AMR.html # docs/news/index.html # docs/pkgdown.yml # docs/reference/AMR-deprecated.html # docs/reference/AMR.html # docs/reference/WHOCC.html # docs/reference/WHONET.html # docs/reference/antibiotics.html # docs/reference/catalogue_of_life.html # docs/reference/catalogue_of_life_version.html # docs/reference/dosage.html # docs/reference/example_isolates.html # docs/reference/example_isolates_unclean.html # docs/reference/g.test.html # docs/reference/intrinsic_resistant.html # docs/reference/microorganisms.codes.html # docs/reference/microorganisms.html # docs/reference/microorganisms.old.html # docs/reference/rsi_translation.html	2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends	1b0983e382	(v1.8.1) prerelease 1.8.1	2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends	8c9feea087	website update	2022-03-12 19:53:29 +01:00
dr. M.S. (Matthijs) Berends	08d387b5ce	(v1.8.0.9005) as.rsi() fix	2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends	ad82bb4ce0	(v1.8.0.9004) MIC printing in tibbles	2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends	dedbe92322	(v1.8.0.9003) deps update	2022-03-02 23:16:37 +01:00
dr. M.S. (Matthijs) Berends	3b2b2be5f8	(v1.8.0.9002) as.rsi() cleanup, more informative warnings	2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends	18e8525d10	(v1.8.0.9001) as.mo improvement, fixes #52	2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends	be792cc9eb	(v1.8.0.9000) unit tests for R 3.3	2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends	25cef46c59	(v1.8.0) prerelease 1.8.0	2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends	75dac113b6	(v1.7.1.9077) skimr support only for newer R versions	2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends	d9274bcd0a	(v1.7.1.9075) assignment operator	2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends	bd4bb1d72f	(v1.7.1.9073) as.rsi() fix for UTIs	2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends	5eef01165e	(v1.7.1.9072) as.rsi() fix for UTIs	2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends	0cbf8f48b6	(v1.7.1.9071) rsi disk fix	2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends	578e7dfee9	(v1.7.1.9070) Better WHONET support	2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends	f90e27c1b0	(v1.7.1.9069) CLSI 2021 support	2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends	1e66a3daf3	(v1.7.1.9068) new logo, unit tests	2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends	56f1ce328a	(v1.7.1.9067) Support for Swedish and Russian	2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends	5b5f70a103	(v1.7.1.9066) mdro EUCAST v3.3	2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends	e0a2634f14	(v1.7.1.9065) unit tests	2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends	77ba4318ea	(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling	2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends	e18c49ed93	(v1.7.1.9063) not_intrinsic_resistant	2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends	e63defe324	(v1.7.1.9062) website update	2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends	1fa3fc6af2	(v1.7.1.9061) bugfix set_ab_names	2021-12-05 23:21:59 +01:00
dr. M.S. (Matthijs) Berends	75965124ef	(v1.7.1.9060) bugfix set_ab_names	2021-12-05 23:11:10 +01:00
dr. M.S. (Matthijs) Berends	b747036deb	(v1.7.1.9059) bugfix set_ab_names	2021-12-05 22:59:06 +01:00
dr. M.S. (Matthijs) Berends	7965468ccd	(v1.7.1.9058) vars selection for set_ab_names()	2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends	3abe61fd61	(v1.7.1.9057) NAs in get_episode()	2021-12-02 13:32:14 +01:00
dr. M.S. (Matthijs) Berends	5375f75829	(v1.7.1.9056) unit tests	2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends	c8698347cb	(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers	2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends	694cf5ba77	(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup	2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends	9a2c431e16	(v1.7.1.9053) fortify() methods	2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends	91149d6d35	(v1.7.1.9052) eucast-update	2021-10-06 16:22:36 +02:00