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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 09:26:11 +01:00
Commit Graph

143 Commits

Author SHA1 Message Date
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 2023-05-17 22:12:10 +02:00
9179e98e12 patient ID in first isolate 2023-03-11 17:13:19 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
6016547f1f support for dplyr 1.1.0 2023-02-15 17:02:10 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
4fe90092c7 fix for NA in as.ab() 2022-10-10 15:44:59 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00
986bd826ee (v1.7.1.9035) dplyr grouping fix on windows? 2021-08-30 15:43:12 +02:00
1daa117e9f (v1.7.1.9033) dplyr grouping fix on windows? 2021-08-30 15:01:32 +02:00
e6ce25162e (v1.7.1.9031) dplyr grouping fix on windows? 2021-08-30 14:07:46 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
d04e83f494 (v1.7.1.9005) ab class selectors for R-3.0 and R-3.1 2021-06-22 12:16:42 +02:00
99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
be49131ed7 (v1.6.0.9043) translation update 2021-05-17 19:43:01 +02:00
916df6e90c (v1.6.0.9041) filter_ab_class() fix 2021-05-16 10:50:00 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
a9fd4aa49f (v1.6.0.9013) website update 2021-04-29 17:16:30 +02:00
93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00