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Commit Graph

707 Commits

Author SHA1 Message Date
683a0e748a (v1.7.1.9001) unit tests 2021-06-05 15:12:01 +02:00
1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
7e70403efb (v1.7.1) New CRAN release 2021-06-03 15:19:21 +02:00
279376fccb (v1.7.0.9002) old MO codes 2021-06-01 16:36:33 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
41d279daa1 (v1.7.0) v1.7.0 2021-05-26 11:10:34 +02:00
ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
e5599bc694 (v1.6.0.9065) unit tests 2021-05-24 11:01:32 +02:00
4fbf9e1720 (v1.6.0.9064) prepare new release 2021-05-24 09:34:08 +02:00
a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
06302d296a (v1.6.0.9062) code consistency 2021-05-24 00:06:28 +02:00
07939b1a14 (v1.6.0.9061) age() update 2021-05-23 23:11:16 +02:00
fa2f5214b9 (v1.6.0.9060) unit tests 2021-05-22 10:05:59 +02:00
0b1f59edec (v1.6.0.9058) unit tests 2021-05-22 08:58:51 +02:00
65a8b58aa6 (v1.6.0.9056) support codecov again 2021-05-21 20:30:48 +02:00
b210f1327c (v1.6.0.9055) support codecov again 2021-05-21 20:20:51 +02:00
fecc5d183c (v1.6.0.9054) unit tests 2021-05-20 15:06:08 +02:00
69a656abc0 (v1.6.0.9053) unit tests 2021-05-20 13:42:17 +02:00
4a2a48b7c1 (v1.6.0.9052) unit tests 2021-05-20 11:42:39 +02:00
04ef5b28e7 (v1.6.0.9050) printing NA in custom_eucast_rules() 2021-05-20 10:10:40 +02:00
9a2879cba9 (v1.6.0.9049) unit tests 2021-05-20 00:07:27 +02:00
2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
6920c0be41 (v1.6.0.9047) filter_ab_class() fixes 2021-05-18 11:29:31 +02:00
cfb7df823e (v1.6.0.9044) betalactams() selector 2021-05-18 00:53:04 +02:00
be49131ed7 (v1.6.0.9043) translation update 2021-05-17 19:43:01 +02:00
83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
916df6e90c (v1.6.0.9041) filter_ab_class() fix 2021-05-16 10:50:00 +02:00
00496e45b7 (v1.6.0.9040) unit tests 2021-05-16 09:25:36 +02:00
6c3ab19e3a (v1.6.0.9038) unit tests 2021-05-15 23:47:36 +02:00
3619c1327c (v1.6.0.9037) unit tests 2021-05-15 23:36:02 +02:00
73fb0374c3 (v1.6.0.9036) unit tests 2021-05-15 23:25:10 +02:00
229e1bb407 (v1.6.0.9035) unit tests 2021-05-15 22:55:12 +02:00
86736ab9a7 (v1.6.0.9032) unit tests 2021-05-15 21:54:56 +02:00
d8c91d5876 (v1.6.0.9031) tinytest unit tests 2021-05-15 21:36:22 +02:00
9a381c8d18 (v1.6.0.9030) new unit test flow 2021-05-13 23:07:31 +02:00
9ed2f6490f (v1.6.0.9028) new unit test flow 2021-05-13 22:44:11 +02:00
5b9fb8daf4 (v1.6.0.9027) new unit test flow 2021-05-13 21:54:15 +02:00
b1d942be91 (v1.6.0.9026) new unit test flow 2021-05-13 21:16:22 +02:00
994d157aa6 (v1.6.0.9025) unit test update 2021-05-13 20:53:56 +02:00
9d9d62eba4 (v1.6.0.9024) unit test update 2021-05-13 20:49:47 +02:00
aeea00881e (v1.6.0.9023) new unit test flow 2021-05-13 19:31:47 +02:00
655b813e99 (v1.6.0.9022) unit test fix 2021-05-13 15:56:12 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
3319fbae58 (v1.6.0.9020) fix for skimr in dplyr 1.0.6 2021-05-06 15:17:11 +02:00
5899678b74 (v1.6.0.9019) website fix 2021-05-05 15:47:39 +02:00
0aca719929 (v1.6.0.9018) unit tests 2021-05-04 15:20:43 +02:00
5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
f33e61bac7 (v1.6.0.9016) website update and c() fixes 2021-05-03 13:06:43 +02:00
12a8d59869 (v1.6.0.9015) italicise_taxonomy 2021-05-03 10:47:32 +02:00
e405de079c (v1.6.0.9014) as.rsi() for numeric values 2021-04-30 13:18:48 +02:00
a9fd4aa49f (v1.6.0.9013) website update 2021-04-29 17:16:30 +02:00
5e06b20d43 (v1.6.0.9012) unit tests 2021-04-27 11:28:17 +02:00
c5fff1c95c (v1.6.0.9011) unit tests 2021-04-27 10:27:13 +02:00
93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00
5f9e7bd3ee (v1.6.0.9009) key_antibiotics update 2021-04-23 16:13:26 +02:00
70b803dbb6 (v1.6.0.9008) unlike, bugfix for col_mo naming 2021-04-23 09:59:36 +02:00
c6289c3fc3 (v1.6.0.9007) documentation custom eucast rules, progress bar as.mo 2021-04-20 10:46:17 +02:00
de66eccf43 (v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi 2021-04-16 14:59:57 +02:00
24ac18a99d (v1.6.0.9005) unit test fix 2021-04-16 13:24:59 +02:00
9842ef9660 (v1.6.0.9004) unit test fix 2021-04-16 12:02:57 +02:00
00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
d277d58475 (v1.6.0.9002) R-3.0 installation fix 2021-04-12 14:24:40 +02:00
6ff5448192 (v1.6.0.9001) support Inf for episodes 2021-04-12 12:35:13 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
551f99dc8f v1.6.0 2021-03-15 07:23:21 +01:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
a7c9b4c295 (v1.5.0.9039) handle first isolates for missing antibiograms 2021-03-08 02:38:32 +01:00
461793dc34 (v1.5.0.9038) quick test 2021-03-08 01:24:37 +01:00
a12975bc6e (v1.5.0.9037) quick test 2021-03-08 00:13:13 +01:00
68163e3089 (v1.5.0.9036) quick test 2021-03-07 22:45:05 +01:00
2f0fc3cab7 (v1.5.0.9035) quick test 2021-03-07 22:15:25 +01:00
450bbe5fb7 (v1.5.0.9034) unit test fix 2021-03-07 21:16:45 +01:00
1bbf409fe5 (v1.5.0.9033) as.rsi fix 2021-03-07 16:15:43 +01:00
850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
91dd755cac (v1.5.0.9031) math processing of MICs 2021-03-05 15:36:39 +01:00
0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
1737d56ae4 (v1.5.0.9026) vignette update, support for GISA 2021-02-25 12:31:12 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
31ceba5441 (v1.5.0.9024) more speed improvements 2021-02-22 20:21:33 +01:00
0fdabff1ba (v1.5.0.9023) mo properties speed improvement 2021-02-21 23:19:40 +01:00
062c49fca1 (v1.5.0.9022) mo properties speed improvement 2021-02-21 22:56:35 +01:00
5ef8cb41a7 (v1.5.0.9021) improve speed of %like% 2021-02-21 20:15:09 +01:00
daa12ced2c (v1.5.0.9020) translation fix 2021-02-18 23:23:14 +01:00
601ea7377c (v1.5.0.9019) use functions without loading AMR pkg 2021-02-17 10:58:13 +01:00
2dd0656355 (v1.5.0.9018) fix unit tests 2021-02-09 12:28:15 +01:00
cb404492b2 (v1.5.0.9017) unit testing 2021-02-08 21:09:36 +01:00
4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
24eb4453db (v1.5.0.9011) small dosage update 2021-01-24 23:27:11 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
1a88caa119 (v1.5.0.9009) unit test fixes 2021-01-22 10:55:07 +01:00
1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00