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Commit Graph

472 Commits

Author SHA1 Message Date
54b6322056 (v0.8.0.9028) examples fix 2019-11-10 13:17:20 +01:00
59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
a1fd2cd98a (v0.8.0.9014) unit test update 2019-11-05 22:23:45 +01:00
2560aa1a53 (v0.8.0.9013) unit test update 2019-11-05 21:52:58 +01:00
5345d2759a (v0.8.0.9012) mdro improvement 2019-11-05 11:28:52 +01:00
fe606e287b (v0.8.0.9011) col guess update 2019-11-04 12:08:08 +01:00
9060233953 (v0.8.0.9010) mdro bug fix 2019-11-04 11:35:34 +01:00
0bb531f3e0 (v0.8.0.9009) unit test 2019-11-03 22:41:29 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
7ff2ad8188 (v0.8.0.9006) small typos 2019-10-27 00:31:59 +02:00
412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
c01dc8a5b7 (v0.8.0.9003) printing fix for AB columns 2019-10-23 15:44:11 +02:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
666126cd5e (v0.8.0.9001) guideline text on as.rsi() 2019-10-21 14:12:28 +02:00
10e6b225e7 (v0.7.1.9107) v0.8.0 2019-10-15 14:35:23 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
683d226fd3 Update guess_ab_col.R 2019-10-08 08:02:19 +00:00
f479dfce60 (v0.7.1.9097) mdro() examples fix 2019-10-07 14:57:27 +02:00
4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
1e260d85c8 (v0.7.1.9095) get_column_abx() fix 2019-10-06 22:19:26 +02:00
3d5692219e (v0.7.1.9094) get_column_abx() improvement 2019-10-06 21:44:08 +02:00
b6653a620a (v0.7.1.9093) as.ab() fix 2019-10-06 21:07:38 +02:00
8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
b39e7feae6 (v0.7.1.9090) factor levels of mdr_tb 2019-09-26 21:58:06 +02:00
b9f01d686e (v0.7.1.9089) eucast file update 2019-09-25 22:37:40 +02:00
99d0fe76dd (v0.7.1.9088) bug_drug improvement 2019-09-25 15:43:22 +02:00
04cd0d25db (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
38336d7408 (v0.7.1.9086) small fix 2019-09-23 23:00:18 +02:00
ad5f211a8f (v0.7.1.9085) Salmonella fix 2019-09-23 21:24:37 +02:00
76dc948067 (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
8ce252fbc5 (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
a8c6b8f9c4 (v0.7.1.9082) CI fix 2019-09-23 14:37:24 +02:00
64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
57b0bd92a0 (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
46b61e9a70 (v0.7.1.9078) unit tests 2019-09-20 14:50:02 +02:00
40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
f553a08a7b (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
b5d2a08401 (v0.7.1.9071) p_symbol() 2019-09-03 09:47:39 +02:00
06b6266366 (v0.7.1.9070) na.rm for age(), age_groups() 2019-09-02 15:17:41 +02:00
c7be72f0ce (v0.7.1.9069) documentation update 2019-09-01 13:16:57 +02:00
88ee1b7268 (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
34a82d091e (v0.7.1.9067) honor info 2019-08-28 17:12:48 +02:00
e2b78fa428 (v0.7.1.9066) bug-drug fix 2019-08-27 23:00:00 +02:00
248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
f3276592b7 (v0.7.1.9064) bug-drug fix 2019-08-27 19:15:04 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
13d4fef801 (v0.7.1.9061) mo_property improvement 2019-08-26 10:03:37 +02:00
05dcb43660 (v0.7.1.9060) globals 2019-08-25 23:25:12 +02:00
e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
c44c5e3913 (v0.7.1.9037) CI and global env fix 2019-08-12 15:34:49 +02:00
bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
bfa92eb166 (v0.7.1.9028) predict update 2019-08-07 15:58:32 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
96b334d7cc website update 2019-08-06 14:46:30 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
85b62aaf8f (v0.7.1.9023) wrong percentage in as.mo() 2019-08-04 17:41:12 +02:00
d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
ec0ca20dee (v0.7.1.9017) deps 2019-07-29 21:20:26 +02:00
b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
c652c6913f (v0.7.1.9013) guess_mo_ab speed improvement 2019-07-11 13:39:18 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
b15d59cf03 (v0.7.1.9009) note for WHOCC 2019-07-09 11:22:46 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
453c159eac 0.7.1 2019-06-23 14:49:17 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
7094c1f459 website update 2019-06-16 22:14:43 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
980be2b22d (v0.7.0.9009) global note 2019-06-13 16:40:35 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
699e87ab4a (v0.7.0.9007) renamed notes fix 2019-06-12 16:08:20 +02:00