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AMR
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165 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 227121af3d add Dialister to microorganisms 2018-08-03 11:46:06 +02:00
dr. M.S. (Matthijs) Berends 6262315527 Becker classification 
Lancefield classification
Added Lancefield groups to `microorganisms` data set
 2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends d9e204031d update to septic_patients, speed improvements 2018-07-25 14:17:04 +02:00
uscloud dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends 6eaf594cb7 update data info 2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends 970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends c182a9673d fix clipboard on linux 2018-04-02 11:11:21 +02:00
dr. M.S. (Matthijs) Berends 53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends fe803f7279
use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends 502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species 
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
 2018-03-19 12:43:22 +01:00
ceefluz 4ea0333349 Minor text changes for DDD definition 2018-03-13 11:48:30 +01:00
dr. M.S. (Matthijs) Berends 34e70a65ed
added septic_patients 2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends 8a603876d2
misc 2018-02-26 15:53:09 +01:00
dr. M.S. (Matthijs) Berends be51a95448
rename columns 2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends 62304dc23f
first commit 2018-02-21 11:52:31 +01:00