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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 12:46:12 +01:00
Commit Graph

43 Commits

Author SHA1 Message Date
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00
0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
9478ab71be freq - decimals 2018-12-10 10:13:40 +01:00
8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
fab64e6728 read.4D improvements 2018-11-15 12:42:35 +01:00
768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
3e87c8f409 count_* functions 2018-08-22 00:02:26 +02:00
d8f70a74de clipboard error 2018-08-01 10:32:24 +02:00
03a3cb397b clipboard update 2018-07-23 15:09:19 +02:00
34ee0247ac addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00
10fce8382c include IQR and MAD in freq 2018-07-03 11:30:40 +02:00
f7af8a81da update man page 2018-06-29 09:06:47 +02:00
6ee713cec1 move tbl_parse_guess 2018-06-29 08:56:03 +02:00
649a8025aa add clipboard functions again 2018-06-27 15:54:56 +02:00
uscloud
dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
c0fc82c794 Added function n_rsi 2018-05-02 14:56:25 +02:00
970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
82fec5cc51 Try to support older R versions 2018-04-19 14:10:57 +02:00
e7396b8f39 Try to support older R versions 2018-04-19 12:50:23 +02:00
4b5530ed64 Try to support older R versions 2018-04-18 15:19:00 +02:00
a814d82b4b try to support older R versions 2018-04-18 14:50:16 +02:00
2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
07bdd61241 update dependencies 2018-04-02 16:05:09 +02:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
34e70a65ed
added septic_patients 2018-02-27 20:01:02 +01:00
62304dc23f
first commit 2018-02-21 11:52:31 +01:00