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Commit Graph

15 Commits

Author SHA1 Message Date
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
68abb00c59 add include_screening to as.sir() 2023-02-12 15:09:54 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00