Claude
b1cf7a94ad
Migrate parallel computing in as.sir() from parallel:: to future/future.apply
...
Replace parallel::mclapply() and parallel::parLapply() with
future.apply::future_lapply(), enabling transparent support for any
future backend (multisession, multicore, mirai_multisession, cluster)
on all platforms including Windows.
When parallel = TRUE the function now: (1) respects an active
future::plan() set by the user without overriding it on exit, or
(2) sets a temporary multisession plan with parallelly::availableCores()
and tears it down on exit. The max_cores argument controls worker count
only when no user plan is active.
future and future.apply are added to Suggests in DESCRIPTION.
https://claude.ai/code/session_01M1Jvf2Miu6JL4TQrEh1wS8
2026-04-27 12:21:48 +00:00
3f1b20c304
(v3.0.1.9052) fix NEWS
2026-04-25 16:21:31 +02:00
Matthijs Berends
8ff5d4472a
Add add_if_missing parameter to control NA handling in interpretive rules ( #264 )
2026-04-21 21:53:43 +02:00
26613d774b
(v3.0.1.9042) add EUCAST breakpoint table v16 to interpretive_rules()
2026-04-02 11:42:19 +02:00
3a736bc484
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
12cf144b19
(v3.0.1.9021) add guideline to resistance() and susceptibility()
2026-02-12 20:34:06 +01:00
ba4c159154
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
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Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
2df2911cf4
(v3.0.1.9018) fixes #249
...
updates AB groups
2026-01-16 10:57:03 +01:00
225c73f7e7
(v3.0.1.9004) Revamp as.sir() interpretation for capped MICs
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Fixes #243
Fixes #244
2025-12-15 13:18:13 +01:00
8dab0a3730
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
7d45ca9fbf
(v2.1.1.9274) Improve is_sir_eligible, rename verbose MDRO output
2025-05-12 12:35:11 +02:00
a778eb9bcf
(v2.1.1.9272) (v2.1.1.9271) add sensititre AB and animal codes
2025-05-04 16:40:08 +02:00
dc5559a2c4
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
b8f0f64287
(v2.1.1.9269) Support 7 new languages
2025-05-02 19:25:19 +02:00
5e6bbdf3d1
(v2.1.1.9267) update ATCs
2025-05-01 11:48:49 +02:00
faa9ae0d85
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
6819473457
(v2.1.1.9259) Parallel computing for R < 4
2025-04-27 20:25:39 +02:00
52cd3e88cd
(v2.1.1.9258) fix for R <= 3.6
2025-04-27 17:53:13 +02:00
f340e257fa
(v2.1.1.9256) unit tests
2025-04-26 21:29:50 +02:00
d166aa2c1d
(v2.1.1.9255) fix examples
2025-04-26 16:35:14 +02:00
92316d5ddc
(v2.1.1.9254) fix antimicrobial synonyms
2025-04-26 16:23:14 +02:00
4e7fca3b38
(v2.1.1.9253) parallel computing
2025-04-26 15:47:00 +02:00
abee2a954e
(v2.1.1.9252) fix MIC for >= and <=
2025-04-25 10:19:40 +02:00
be13934fe7
(v2.1.1.9249) unit test
2025-04-20 17:49:47 +02:00
9e64d7708e
(v2.1.1.9248) unit test fix
2025-04-20 15:27:36 +02:00
ea443f7483
(v2.1.1.9247) CLSI/EUCAST 2025!
2025-04-20 12:55:31 +02:00
ca00ed468e
(v2.1.1.9243) fix sir documentation
2025-04-18 16:32:45 +02:00
29b0ef1089
(v2.1.1.9242) sir log
2025-04-18 16:03:50 +02:00
579025f678
(v2.1.1.9241) fix sir
2025-04-18 13:25:59 +02:00
cf91e677c6
(v2.1.1.9240) fix sir interpretation
2025-04-16 15:22:12 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
a905303296
(v2.1.1.9234) fix CLSI
2025-04-07 17:36:01 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
7f1ae1f474
(v2.1.1.9203) unit tests
2025-03-15 13:25:23 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website
2025-03-14 17:01:50 +01:00
861331b1df
(v2.1.1.9196) fix eucast, unit tests
2025-03-13 15:38:39 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET
2025-03-12 16:24:38 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
1ca40e8d67
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
ef8ef28650
(v2.1.1.9072)
2024-09-19 11:46:17 +02:00
c67d003e9e
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
0c3d81f32e
(v2.1.1.9059) documentation fix
2024-06-17 22:26:05 +02:00
a4dc37a4e4
(v2.1.1.9057) fix for missing breakpoints
2024-06-17 16:52:12 +02:00
