|
|
5ccb330b42
|
(v1.7.1.9018) translation fix
|
2021-07-11 13:20:45 +02:00 |
|
|
|
39d97ab53b
|
(v1.7.1.9017) ab selector error
|
2021-07-08 23:05:45 +02:00 |
|
|
|
b228eb1536
|
(v1.7.1.9016) only_treatable ab selectors
|
2021-07-08 22:23:28 +02:00 |
|
|
|
625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
|
|
|
ad10693a1a
|
(v1.7.1.9014) rep() for S3 classes
|
2021-07-06 16:35:14 +02:00 |
|
|
|
16b4c74d44
|
(v1.7.1.9013) temp fix for ggplot2 bug #4511
|
2021-07-04 22:10:46 +02:00 |
|
|
|
5b5741f681
|
(v1.7.1.9011) subsetting taxonomy fix
|
2021-07-04 15:26:50 +02:00 |
|
|
|
3bd50710e8
|
(v1.7.1.9010) fix for count_* and proportion_*
|
2021-07-04 12:00:41 +02:00 |
|
|
|
3e26929838
|
(v1.7.1.9009) fix for ab class selectors
|
2021-07-03 21:56:53 +02:00 |
|
|
|
95050ee3e0
|
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
|
2021-06-23 10:03:17 +02:00 |
|
|
|
d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
|
|
|
c44d9392ca
|
(v1.7.1.9004) more extensive unit tests
|
2021-06-15 10:51:04 +02:00 |
|
|
|
556bf0014d
|
(v1.7.1.9003) unit test
|
2021-06-14 22:37:05 +02:00 |
|
|
|
99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
|
|
|
683a0e748a
|
(v1.7.1.9001) unit tests
|
2021-06-05 15:12:01 +02:00 |
|
|
|
1908e7cc7a
|
(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
|
|
|
7e70403efb
|
(v1.7.1) New CRAN release
|
2021-06-03 15:19:21 +02:00 |
|
|
|
bef0f42f66
|
(v1.7.0.9001) CLSI 2020 guideline
|
2021-06-01 15:33:06 +02:00 |
|
|
|
f406319503
|
(v1.7.0.9000) package size
|
2021-05-30 22:14:38 +02:00 |
|
|
|
a33c8a51a2
|
v1.7.0
|
2021-05-26 10:59:54 +02:00 |
|
|
|
ac73a8d849
|
v1.7.0
|
2021-05-24 15:29:17 +02:00 |
|
|
|
e5599bc694
|
(v1.6.0.9065) unit tests
|
2021-05-24 11:01:32 +02:00 |
|
|
|
4fbf9e1720
|
(v1.6.0.9064) prepare new release
|
2021-05-24 09:34:08 +02:00 |
|
|
|
a13fd98e8b
|
(v1.6.0.9063) prepare new release
|
2021-05-24 09:00:11 +02:00 |
|
|
|
06302d296a
|
(v1.6.0.9062) code consistency
|
2021-05-24 00:06:28 +02:00 |
|
|
|
07939b1a14
|
(v1.6.0.9061) age() update
|
2021-05-23 23:11:16 +02:00 |
|
|
|
b210f1327c
|
(v1.6.0.9055) support codecov again
|
2021-05-21 20:20:51 +02:00 |
|
|
|
4a2a48b7c1
|
(v1.6.0.9052) unit tests
|
2021-05-20 11:42:39 +02:00 |
|
|
|
04ef5b28e7
|
(v1.6.0.9050) printing NA in custom_eucast_rules()
|
2021-05-20 10:10:40 +02:00 |
|
|
|
9a2879cba9
|
(v1.6.0.9049) unit tests
|
2021-05-20 00:07:27 +02:00 |
|
|
|
2413efd5c1
|
(v1.6.0.9048) ab selectors overhaul
|
2021-05-19 22:55:42 +02:00 |
|
|
|
6920c0be41
|
(v1.6.0.9047) filter_ab_class() fixes
|
2021-05-18 11:29:31 +02:00 |
|
|
|
cfb7df823e
|
(v1.6.0.9044) betalactams() selector
|
2021-05-18 00:53:04 +02:00 |
|
|
|
be49131ed7
|
(v1.6.0.9043) translation update
|
2021-05-17 19:43:01 +02:00 |
|
|
|
83fec69a03
|
(v1.6.0.9042) translation update
|
2021-05-17 11:26:12 +02:00 |
|
|
|
916df6e90c
|
(v1.6.0.9041) filter_ab_class() fix
|
2021-05-16 10:50:00 +02:00 |
|
|
|
aeea00881e
|
(v1.6.0.9023) new unit test flow
|
2021-05-13 19:31:47 +02:00 |
|
|
|
655b813e99
|
(v1.6.0.9022) unit test fix
|
2021-05-13 15:56:12 +02:00 |
|
|
|
29dbfa2f49
|
(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
|
|
|
3319fbae58
|
(v1.6.0.9020) fix for skimr in dplyr 1.0.6
|
2021-05-06 15:17:11 +02:00 |
|
|
|
0aca719929
|
(v1.6.0.9018) unit tests
|
2021-05-04 15:20:43 +02:00 |
|
|
|
5679ccdaf9
|
(v1.6.0.9017) extra system codes
|
2021-05-04 12:47:33 +02:00 |
|
|
|
f33e61bac7
|
(v1.6.0.9016) website update and c() fixes
|
2021-05-03 13:06:43 +02:00 |
|
|
|
12a8d59869
|
(v1.6.0.9015) italicise_taxonomy
|
2021-05-03 10:47:32 +02:00 |
|
|
|
e405de079c
|
(v1.6.0.9014) as.rsi() for numeric values
|
2021-04-30 13:18:48 +02:00 |
|
|
|
a9fd4aa49f
|
(v1.6.0.9013) website update
|
2021-04-29 17:16:30 +02:00 |
|
|
|
5e06b20d43
|
(v1.6.0.9012) unit tests
|
2021-04-27 11:28:17 +02:00 |
|
|
|
c5fff1c95c
|
(v1.6.0.9011) unit tests
|
2021-04-27 10:27:13 +02:00 |
|
|
|
93683a4ae2
|
(v1.6.0.9010) big first_isolate() update
|
2021-04-26 23:57:37 +02:00 |
|
|
|
5f9e7bd3ee
|
(v1.6.0.9009) key_antibiotics update
|
2021-04-23 16:13:26 +02:00 |
|
|
|
70b803dbb6
|
(v1.6.0.9008) unlike, bugfix for col_mo naming
|
2021-04-23 09:59:36 +02:00 |
|
|
|
c6289c3fc3
|
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
|
2021-04-20 10:46:17 +02:00 |
|
|
|
de66eccf43
|
(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
|
2021-04-16 14:59:57 +02:00 |
|
|
|
24ac18a99d
|
(v1.6.0.9005) unit test fix
|
2021-04-16 13:24:59 +02:00 |
|
|
|
9842ef9660
|
(v1.6.0.9004) unit test fix
|
2021-04-16 12:02:57 +02:00 |
|
|
|
00d3e437a8
|
(v1.6.0.9003) like() fix
|
2021-04-16 11:41:05 +02:00 |
|
|
|
d277d58475
|
(v1.6.0.9002) R-3.0 installation fix
|
2021-04-12 14:24:40 +02:00 |
|
|
|
6ff5448192
|
(v1.6.0.9001) support Inf for episodes
|
2021-04-12 12:35:13 +02:00 |
|
|
|
7a3139f7cc
|
(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
|
|
|
551f99dc8f
|
v1.6.0
|
2021-03-15 07:23:21 +01:00 |
|
|
|
4e0a9533ad
|
(v1.5.0.9041) SNOMED update
|
2021-03-11 21:42:30 +01:00 |
|
|
|
8d6ceb6a15
|
(v1.5.0.9040) removal of isolate_identifier
|
2021-03-08 09:44:17 +01:00 |
|
|
|
a7c9b4c295
|
(v1.5.0.9039) handle first isolates for missing antibiograms
|
2021-03-08 02:38:32 +01:00 |
|
|
|
461793dc34
|
(v1.5.0.9038) quick test
|
2021-03-08 01:24:37 +01:00 |
|
|
|
a12975bc6e
|
(v1.5.0.9037) quick test
|
2021-03-08 00:13:13 +01:00 |
|
|
|
68163e3089
|
(v1.5.0.9036) quick test
|
2021-03-07 22:45:05 +01:00 |
|
|
|
2f0fc3cab7
|
(v1.5.0.9035) quick test
|
2021-03-07 22:15:25 +01:00 |
|
|
|
450bbe5fb7
|
(v1.5.0.9034) unit test fix
|
2021-03-07 21:16:45 +01:00 |
|
|
|
1bbf409fe5
|
(v1.5.0.9033) as.rsi fix
|
2021-03-07 16:15:43 +01:00 |
|
|
|
850c123de7
|
(v1.5.0.9032) All group generics for MICs
|
2021-03-07 13:52:39 +01:00 |
|
|
|
91dd755cac
|
(v1.5.0.9031) math processing of MICs
|
2021-03-05 15:36:39 +01:00 |
|
|
|
0d29bde693
|
(v1.5.0.9030) as.ab() speed improvement
|
2021-03-05 10:32:09 +01:00 |
|
|
|
0e0e3c4ffa
|
(v1.5.0.9029) added missing families and orders
|
2021-03-05 01:31:46 +01:00 |
|
|
|
ddf88345f1
|
(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
|
|
|
41f94cde97
|
(v1.5.0.9027) website update
|
2021-02-26 12:11:29 +01:00 |
|
|
|
1737d56ae4
|
(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
|
|
|
a673407904
|
(v1.5.0.9025) big plot and ggplot generics update
|
2021-02-25 10:33:08 +01:00 |
|
|
|
31ceba5441
|
(v1.5.0.9024) more speed improvements
|
2021-02-22 20:21:33 +01:00 |
|
|
|
0fdabff1ba
|
(v1.5.0.9023) mo properties speed improvement
|
2021-02-21 23:19:40 +01:00 |
|
|
|
062c49fca1
|
(v1.5.0.9022) mo properties speed improvement
|
2021-02-21 22:56:35 +01:00 |
|
|
|
5ef8cb41a7
|
(v1.5.0.9021) improve speed of %like%
|
2021-02-21 20:15:09 +01:00 |
|
|
|
daa12ced2c
|
(v1.5.0.9020) translation fix
|
2021-02-18 23:23:14 +01:00 |
|
|
|
601ea7377c
|
(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
|
|
|
2dd0656355
|
(v1.5.0.9018) fix unit tests
|
2021-02-09 12:28:15 +01:00 |
|
|
|
cb404492b2
|
(v1.5.0.9017) unit testing
|
2021-02-08 21:09:36 +01:00 |
|
|
|
4a84894f79
|
(v1.5.0.9016) only_rsi_columns update, documentation
|
2021-02-08 14:18:42 +01:00 |
|
|
|
8fda473e49
|
(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
|
|
|
2eca8c3f01
|
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
|
|
|
20d638c193
|
(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
|
|
|
331c1f6508
|
(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
|
|
|
24eb4453db
|
(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
|
|
|
286eaa9699
|
(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
|
|
|
1a88caa119
|
(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
|
|
|
1ba44776a1
|
(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
|
|
|
27f084d819
|
(v1.5.0.9007) updated unit tests
|
2021-01-18 18:45:43 +01:00 |
|
|
|
4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
|
|
|
e95218c0d1
|
(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
|
|
|
e699de955c
|
(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
|
|
|
7ebc534ccd
|
(v1.5.0.9003) verbose output of mdro()
|
2021-01-15 22:44:52 +01:00 |
|
|
|
6745f3fb17
|
(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
|
|
|
bc00470dca
|
(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
|
|
|
d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
|
|
|
3b84b8be75
|
v1.5.0
|
2021-01-06 11:16:17 +01:00 |
|
|
|
8d117820b8
|
(v1.4.0.9060) ab class selector fix
|
2021-01-04 13:39:06 +01:00 |
|
|
|
c9de74c81a
|
(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
|
|
|
63a4dda467
|
(v1.4.0.9056) subsetting ab class selectors for base R
|
2021-01-03 23:40:05 +01:00 |
|
|
|
d3f007bf65
|
(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
|
|
|
526f8afb08
|
(v1.4.0.9052) replaced all sapply's with type-safe vapply's
|
2020-12-28 22:24:33 +01:00 |
|
|
|
ccf13dd6c0
|
(v1.4.0.9051) ab class
|
2020-12-27 23:19:41 +01:00 |
|
|
|
afc325c314
|
(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
|
|
|
175e33abba
|
(v1.4.0.9049) unit tests
|
2020-12-27 15:07:01 +01:00 |
|
|
|
ed198916bf
|
(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
|
|
|
8b52f9b1be
|
(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
|
|
|
acbd0cf7ca
|
(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
|
|
|
291f802be3
|
(v1.4.0.9045) unit tests
|
2020-12-25 00:06:11 +01:00 |
|
|
|
df37584189
|
(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
|
|
|
128ebcfd62
|
(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
|
|
|
ee70883246
|
(v1.4.0.9042) auto dark theme website
|
2020-12-21 22:46:29 +01:00 |
|
|
|
81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
|
|
|
1faa816090
|
(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
|
|
|
203bc20eb0
|
(v1.4.0.9039) more unit tests
|
2020-12-13 20:44:32 +01:00 |
|
|
|
ac22b8d5c1
|
(v1.4.0.9038) docu update
|
2020-12-13 13:44:04 +01:00 |
|
|
|
c8bcecf232
|
(v1.4.0.9037) random_* functions
|
2020-12-12 23:17:29 +01:00 |
|
|
|
2edd3339db
|
(v1.4.0.9036) more unit tests
|
2020-12-11 12:17:23 +01:00 |
|
|
|
23ddc6004b
|
(v1.4.0.9035) eucast_rules fix
|
2020-12-11 09:05:03 +01:00 |
|
|
|
c9fc7e8a45
|
(v1.4.0.9034) MIC printing update
|
2020-12-09 09:40:50 +01:00 |
|
|
|
2145f1d1ba
|
(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
|
|
|
1bdb136b3a
|
(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
|
|
|
fdf29e6c5b
|
(v1.4.0.9031) as.ab() fix
|
2020-12-03 22:30:14 +01:00 |
|
|
|
e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
|
|
|
4c114ff4b4
|
(v1.4.0.9029) grey background for backticks, like readr pkg
|
2020-12-01 16:59:57 +01:00 |
|
|
|
00447c6dc4
|
git update
|
2020-11-28 22:15:44 +01:00 |
|
|
|
7b42b15c90
|
(v1.4.0.9026) docu update
|
2020-11-24 11:47:54 +01:00 |
|
|
|
b045b571a6
|
(v1.4.0.9025) is_new_episode()
|
2020-11-23 21:50:27 +01:00 |
|
|
|
363218da7e
|
(v1.4.0.9024) is_new_episode()
|
2020-11-17 16:57:41 +01:00 |
|
|
|
93428415d0
|
(v1.4.0.9022) small bugfix
|
2020-11-16 20:02:20 +01:00 |
|
|
|
deefce9520
|
(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
|
|
|
05fb213a7c
|
(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
|
|
|
9666b78ea7
|
(v1.4.0.9019) documentation update
|
2020-11-12 11:07:23 +01:00 |
|
|
|
f2edac3b67
|
(v1.4.0.9018) reference_data in as.rsi()
|
2020-11-11 18:54:03 +01:00 |
|
|
|
01d9522434
|
(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
|
|
|
68ac39aa7f
|
(v1.4.0.9016) as.rsi() older R versions
|
2020-11-10 19:59:14 +01:00 |
|
|
|
15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
|
|
|
dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
|
|
|
d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
|
|
|
423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
|
|
|
5a607abb36
|
(v1.4.0.9011) message formatting
|
2020-10-27 15:56:51 +01:00 |
|
|
|
3d096d96c2
|
(v1.4.0.9009) bugfix for older R version
|
2020-10-26 15:53:31 +01:00 |
|
|
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
|
|
|
f720c9ba0b
|
(v1.4.0.9007) bugfix
|
2020-10-21 15:28:48 +02:00 |
|
|
|
8f868388ce
|
(v1.4.0.9006) bugfix
|
2020-10-21 14:40:00 +02:00 |
|
|
|
9109b9dd62
|
(v1.4.0.9005) bugfix
|
2020-10-21 13:07:23 +02:00 |
|
|
|
ade9f8bafd
|
(v1.4.0.9004) bugfix
|
2020-10-21 11:50:43 +02:00 |
|
|
|
2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
|
|
|
ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
|
|
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
|
|
|
28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
|
|
|
c04dc852cf
|
(v1.3.0.9039) lifecycle updates, added excess kurtosis
|
2020-10-04 21:02:16 +02:00 |
|
|
|
baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
|
|
|
3136bc54aa
|
(v1.3.0.9037) pre-release
|
2020-09-30 10:54:23 +02:00 |
|
|
|
ac1c78c793
|
(v1.3.0.9036) documentation fix
|
2020-09-30 10:24:53 +02:00 |
|
|
|
4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
|
|
|
68e6e1e329
|
(v1.3.0.9034) eucast_rules summary fix
|
2020-09-29 10:40:25 +02:00 |
|
|
|
36ec8b0d81
|
(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
|
|
|
519aada54f
|
(v1.3.0.9032) support skimr
|
2020-09-28 01:08:55 +02:00 |
|
|
|
22f6ceb3e4
|
(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
|
|
|
050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
|
|
|
9667c2994f
|
(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
|
|
|
1d982a82b4
|
(v1.3.0.9028) eucast fix
|
2020-09-24 12:38:13 +02:00 |
|
|
|
027215ed94
|
(v1.3.0.9027) unit tests
|
2020-09-24 00:50:23 +02:00 |
|
|
|
c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
|
|
|
2f0186ace2
|
(v1.3.0.9024) optimalisation
|
2020-09-19 12:57:51 +02:00 |
|
|
|
d049cce69b
|
(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
|
|
|
4e40e42011
|
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
|
|
|
89401ede9f
|
(v1.3.0.9021) typo
|
2020-09-14 20:41:19 +02:00 |
|
|
|
ab60f613aa
|
(v1.3.0.9020) fix for uncertainty in as.mo()
|
2020-09-14 19:41:48 +02:00 |
|
|
|
354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
|
|
|
7b6dd676f7
|
(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
|
|
|
0f6760d427
|
(v1.3.0.9017) small fix
|
2020-09-12 13:54:21 +02:00 |
|
|
|
3ff871afeb
|
(v1.3.0.9016) mo_uncertainties() overhaul
|
2020-09-12 08:49:01 +02:00 |
|
|
|
68e9cb78e9
|
(v1.3.0.9015) as.mo() speedup for valid taxonomic names
|
2020-09-03 20:59:21 +02:00 |
|
|
|
c4b87fe241
|
(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
|
|
|
74a172ef55
|
(v1.3.0.9010) S3 extensions without dependencies
|
2020-08-28 21:55:47 +02:00 |
|
|
|
81af0b001c
|
(v1.3.0.9009) documentation update
|
2020-08-26 16:13:40 +02:00 |
|
|
|
9b8db57c65
|
(v1.3.0.9008) also tibble printing for ab
|
2020-08-26 15:34:12 +02:00 |
|
|
|
5e45fdcf2a
|
(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
|
|
|
c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
|
|
|
dab017a50f
|
(v1.3.0.9004) data sets, as.disk() improvement
|
2020-08-16 21:38:42 +02:00 |
|
|
|
e73f0e211c
|
(v1.3.0.9003) as.rsi() speed improvement
|
2020-08-15 12:54:47 +02:00 |
|
|
|
08d62bb5d5
|
(v1.3.0.9002) intrinsic_resistant data set
|
2020-08-14 13:36:10 +02:00 |
|
|
|
7d16bec21f
|
(v1.3.0.9001) website update
|
2020-08-10 12:46:03 +02:00 |
|
|
|
0d9602a6a9
|
(v1.3.0.9000) support across() in as.rsi()
|
2020-08-10 11:44:58 +02:00 |
|
|
|
c5f7294381
|
(v1.3.0) skip more CRAN tests
|
2020-07-31 10:50:08 +02:00 |
|
|
|
c8edcb7439
|
(v1.3.0) small fixes
|
2020-07-30 15:15:52 +02:00 |
|
|
|
8ff46eefe9
|
(v1.3.0) small MIC fix
|
2020-07-30 12:37:01 +02:00 |
|
|
|
ea4e5e5b81
|
(v1.3.0) v1.3.0
|
2020-07-29 13:48:50 +02:00 |
|
|
|
de0f7b8950
|
(v1.2.0.9040) conserve_capped_values for as.rsi()
|
2020-07-29 12:47:58 +02:00 |
|
|
|
e7def0aa4c
|
(v1.2.0.9039) conserve_capped_values for as.rsi()
|
2020-07-29 11:46:59 +02:00 |
|
|
|
453f7f210b
|
(v1.2.0.9038) CLSI 2019 fix
|
2020-07-29 10:33:47 +02:00 |
|
|
|
1b65d76cfb
|
(v1.2.0.9037) survey on website
|
2020-07-28 18:39:57 +02:00 |
|
|
|
ab2b359e6b
|
(v1.2.0.9036) unit test fix
|
2020-07-22 12:29:51 +02:00 |
|
|
|
09fba38ea6
|
(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
|
|
|
6ab468362d
|
(v1.2.0.9034) code cleaning
|
2020-07-13 09:17:24 +02:00 |
|
|
|
c0cf7ab02b
|
(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
|
2020-07-12 11:43:31 +02:00 |
|
|
|
1d66b5c43c
|
(v1.2.0.9032) Permanently move to GitHub
|
2020-07-09 20:07:39 +02:00 |
|
|
|
cf3c3ee8f7
|
(v1.2.0.9029) GitHub actions
|
2020-07-08 22:55:17 +02:00 |
|
|
|
76fc8e1b14
|
(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
|
|
|
2134fc76e2
|
(v1.2.0.9025) AMR calculation speed improvement
|
2020-07-03 12:14:41 +02:00 |
|
|
|
46cf423eab
|
(v1.2.0.9024) AMR calculation speed improvement
|
2020-07-03 10:51:55 +02:00 |
|
|
|
152ac5bcad
|
(v1.2.0.9023) ab_from_text() improvement
|
2020-07-02 21:12:52 +02:00 |
|
|
|
298e67a45b
|
(v1.2.0.9022) as.ab() improvement
|
2020-07-01 16:21:36 +02:00 |
|
|
|
afc660dc33
|
(v1.2.0.9021) only progressbar in interactive sessions
|
2020-07-01 11:51:26 +02:00 |
|
|
|
cc6ce0a938
|
(v1.2.0.9020) ab_from_text() improvement
|
2020-07-01 11:23:05 +02:00 |
|
|
|
329a0eb0b6
|
(v1.2.0.9019) ab_from_text() dose and administration
|
2020-07-01 11:07:01 +02:00 |
|
|
|
240d817b4e
|
(v1.2.0.9018) ab_from_text() improvement
|
2020-06-26 13:15:46 +02:00 |
|
|
|
4f6f056077
|
(v1.2.0.9017) ab_from_text() improvement
|
2020-06-26 12:31:27 +02:00 |
|
|
|
b31003c0b6
|
(v1.2.0.9016) fix in rsi_calc()
|
2020-06-26 10:21:22 +02:00 |
|
|
|
033ca49817
|
(v1.2.0.9015) ab_from_text()
|
2020-06-25 19:20:50 +02:00 |
|
|
|
344bbd57f4
|
(v1.2.0.9014) ab_from_text()
|
2020-06-25 17:34:50 +02:00 |
|
|
|
8a66e475d7
|
(v1.2.0.9013) unit test fix
|
2020-06-22 13:18:40 +02:00 |
|
|
|
779a4e8348
|
(v1.2.0.9012) mo_domain(), improved error handling
|
2020-06-22 12:18:53 +02:00 |
|
|
|
93a158aebd
|
(v1.2.0.9011) mo_domain(), improved error handling
|
2020-06-22 11:18:40 +02:00 |
|
|
|
e88d7853f5
|
(v1.2.0.9010) documentation fix
|
2020-06-17 21:35:10 +02:00 |
|
|
|
f18389d5d6
|
(v1.2.0.9009) pkg dependency fix
|
2020-06-17 16:29:10 +02:00 |
|
|
|
ac12392da3
|
(v1.2.0.9008) ab_class improvement
|
2020-06-17 15:14:37 +02:00 |
|
|
|
c4d7412f36
|
(v1.2.0.9007) Tidyverse selections
|
2020-06-17 01:39:30 +02:00 |
|
|
|
4f94e1312f
|
(v1.2.0.9006) improve auto col-determination
|
2020-06-11 20:03:13 +02:00 |
|
|
|
8b692ecfcf
|
(v1.2.0.9004) rsi_df() fix for groups
|
2020-06-09 16:18:03 +02:00 |
|
|
|
40221e5244
|
(v1.2.0.9003) better terminal colour support
|
2020-06-05 13:56:05 +02:00 |
|
|
|
2c8d600914
|
(v1.2.0.9002) fix for joins
|
2020-06-03 14:33:55 +02:00 |
|
|
|
5dc4c96b7d
|
(v1.2.0.9001) filter_ab_class() update
|
2020-06-03 11:48:00 +02:00 |
|
|
|
02d07b9fb3
|
(v1.2.0.9000) eucast_rules() fix for tibbles
|
2020-06-02 16:05:56 +02:00 |
|
|
|
b44e2c9202
|
v1.2.0
|
2020-05-28 16:48:55 +02:00 |
|
|
|
d9a4b0bcaf
|
(v1.1.0.9021) 1st isolates update
|
2020-05-28 10:51:56 +02:00 |
|
|
|
86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
|
|
|
ae1969b941
|
(v1.1.0.9019) mo_source fix
|
2020-05-25 01:01:14 +02:00 |
|
|
|
f5ff2e6634
|
(v1.1.0.9018) as.ab() update, added ab_url()
|
2020-05-22 20:29:55 +02:00 |
|
|
|
e467cc103e
|
(v1.1.0.9017) as.ab() update, added ab_url()
|
2020-05-22 20:15:19 +02:00 |
|
|
|
1b1e243d14
|
(v1.1.0.9016) small fix
|
2020-05-21 12:28:57 +02:00 |
|
|
|
743f9a5364
|
(v1.1.0.9015) new default eucast_rules
|
2020-05-20 12:00:17 +02:00 |
|
|
|
5216d2b520
|
(v1.1.0.9014) lose dependencies
|
2020-05-19 14:16:45 +02:00 |
|
|
|
cb1814f5ff
|
(v1.1.0.9013) lose dependencies
|
2020-05-19 13:18:01 +02:00 |
|
|
|
19703eb5d3
|
(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
|
|
|
218fd08097
|
(v1.1.0.9011) lose dependencies
|
2020-05-18 13:59:34 +02:00 |
|
|
|
d659c9baef
|
(v1.1.0.9010) lose dependencies
|
2020-05-18 11:09:02 +02:00 |
|
|
|
bf0402a653
|
(v1.1.0.9009) lose dependencies
|
2020-05-18 10:30:53 +02:00 |
|
|
|
f68d71a5e0
|
(v1.1.0.9007) lose dependencies
|
2020-05-16 21:40:50 +02:00 |
|
|
|
29609a0e2c
|
(v1.1.0.9006) lose dependencies
|
2020-05-16 20:42:45 +02:00 |
|
|
|
df2456b91f
|
(v1.1.0.9005) lose dependencies
|
2020-05-16 20:08:21 +02:00 |
|
|
|
7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
|
|
|
5bdece1f9d
|
(v1.1.0.9000) CI fix
|
2020-04-30 09:05:03 +02:00 |
|
|
|
b040185269
|
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
|
|
|
c2ffbd9f95
|
(v1.0.1.9009) prepare for next release
|
2020-04-15 11:30:28 +02:00 |
|
|
|
4be54d608c
|
(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
|
|
|
cde65141d9
|
(v1.0.1.9007) small bugfix
|
2020-04-14 15:10:09 +02:00 |
|
|
|
7a6f819232
|
(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
|
|
|
d1cb7d3b6f
|
(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
|
|
|
219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
|
|
|
77656a676c
|
(v1.0.1.9002) PCA unit tests
|
2020-03-08 11:18:59 +01:00 |
|
|
|
9fc858f208
|
(v1.0.1.9001) PCA unit tests
|
2020-03-08 09:12:11 +01:00 |
|
|
|
fa0d9c58d9
|
(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
|
|
|
0d5e78b2cf
|
(v1.0.0.9007) small doc fix
|
2020-02-22 17:03:47 +01:00 |
|
|
|
ea32e9916a
|
(v1.0.0.9005) info printing only in interactive mode
|
2020-02-21 21:13:38 +01:00 |
|
|
|
47fe8b7820
|
(v1.0.0.9004) add example_isolaten_unclean
|
2020-02-21 16:05:19 +01:00 |
|
|
|
bb3728f023
|
(v1.0.0.9003) prepare for short update
|
2020-02-21 13:13:34 +01:00 |
|
|
|
6408911922
|
(v1.0.0.9002) fix lintr
|
2020-02-20 20:31:42 +01:00 |
|
|
|
bdb26f624f
|
(v1.0.0.9001) add uti to as.rsi()
|
2020-02-20 17:21:01 +01:00 |
|
|
|
c6184a0fb8
|
(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
|
|
|
c8981a563e
|
(v0.9.0.9027) documentation fix
|
2020-02-17 15:07:25 +01:00 |
|
|
|
5e2b294351
|
(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
|
|
|
11f00f8a0a
|
(v0.9.0.9025) update as.rsi documentation
|
2020-02-16 22:43:56 +01:00 |
|
|
|
c7a93af3d0
|
(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
|
|
|
9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
|
|
|
5a98e6b777
|
(v0.9.0.9022) inheritance fix
|
2020-02-10 14:18:15 +01:00 |
|
|
|
b4356a299c
|
(v0.9.0.9021) inheritance fix
|
2020-02-10 12:25:02 +01:00 |
|
|
|
c7a76ba713
|
(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
|
|
|
4e1c16c5a5
|
(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
|
|
|
f152ab9a48
|
(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
|
|
|
1b80773c22
|
(v0.9.0.9017) documentation fix
|
2020-01-27 19:30:26 +01:00 |
|
|
|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
|
|
|
9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
|
|
|
423d1d3c41
|
(v0.9.0.9013) Support for LOINC codes
|
2020-01-26 20:38:54 +01:00 |
|
|
|
449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
|
|
|
64f5ceef03
|
(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
|
|
|
ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
|
|
|
db5dfff0ca
|
(v0.9.0.9006) added CITATION file
|
2019-12-22 11:43:38 +01:00 |
|
|
|
ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
|
|
|
2db2a2458a
|
(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
|
|
|
a7e538e562
|
(v0.9.0) website fixes
|
2019-11-30 13:31:12 +01:00 |
|
|
|
56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
|
|
|
bb2ed55842
|
(v0.9.0) v0.9.0
|
2019-11-29 19:43:23 +01:00 |
|
|
|
9feef53bde
|
(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
|
|
|
c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
|
|
|
7c28b392b1
|
(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
|
|
|
e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
|
|
|
267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
|
|
|
67f3f4387b
|
(v0.8.0.9032) fix regex error
|
2019-11-15 16:50:46 +01:00 |
|
|
|
09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
|
|
|
248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
|
|
|
d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
|
|
|
54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
|
|
|
59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
|
|
|
ef640add2d
|
(v0.8.0.9021) update vignettes
|
2019-11-09 11:33:22 +01:00 |
|
|
|
e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
|
|
|
a1fd2cd98a
|
(v0.8.0.9014) unit test update
|
2019-11-05 22:23:45 +01:00 |
|
|
|
2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
|
|
|
5345d2759a
|
(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
|
|
|
fe606e287b
|
(v0.8.0.9011) col guess update
|
2019-11-04 12:08:08 +01:00 |
|
|
|
9060233953
|
(v0.8.0.9010) mdro bug fix
|
2019-11-04 11:35:34 +01:00 |
|
|
|
0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
|
|
|
29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
|
|
|
09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
|
|
|
7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
|
|
|
412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
|
|
|
d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
|
|
|
c01dc8a5b7
|
(v0.8.0.9003) printing fix for AB columns
|
2019-10-23 15:44:11 +02:00 |
|
|
|
3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
|
|
|
666126cd5e
|
(v0.8.0.9001) guideline text on as.rsi()
|
2019-10-21 14:12:28 +02:00 |
|
|
|
10e6b225e7
|
(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
|
|
|
00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
|
|
|
c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
|
|
|
683d226fd3
|
Update guess_ab_col.R
|
2019-10-08 08:02:19 +00:00 |
|
|
|
f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
|
|
|
4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
|
|
|
1e260d85c8
|
(v0.7.1.9095) get_column_abx() fix
|
2019-10-06 22:19:26 +02:00 |
|
|
|
3d5692219e
|
(v0.7.1.9094) get_column_abx() improvement
|
2019-10-06 21:44:08 +02:00 |
|
|
|
b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
|
|
|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
|
|
|
edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
|
|
|
b39e7feae6
|
(v0.7.1.9090) factor levels of mdr_tb
|
2019-09-26 21:58:06 +02:00 |
|
|
|
b9f01d686e
|
(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
|
|
|
99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
|
|
|
04cd0d25db
|
(v0.7.1.9087) small fix
|
2019-09-23 23:09:50 +02:00 |
|
|
|
38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
|
|
|
ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
|
|
|
76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
|
|
|
8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
|
|
|
a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
|
|
|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
|
|
|
66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
|
|
|
57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
|
|
|
46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
|
|
|
40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
|
|
|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
|
|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
|
|
|
f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
|
|
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
|
|
|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
|
|
|
b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
|
|
|
06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
|
