6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
MS Berends
c26839b08e
Test on Linux and Mac
2018-03-23 14:59:50 +01:00
MS Berends
9637b43357
Remove Windows only function
2018-03-23 14:59:02 +01:00
MS Berends
39eb307968
Remove Windows only function
2018-03-23 14:58:46 +01:00
MS Berends
1b3daebc84
Remove Windows only function
2018-03-23 14:52:56 +01:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
e1e19af625
README update
2018-03-22 13:45:04 +01:00
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
MS Berends
2db25b3b38
Use R 3.2 to make covr work
2018-03-19 12:49:22 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
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- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
0fec64a240
Add ORCID identifier
2018-03-19 10:28:35 +01:00
6c67c8f6c1
examples edit
2018-03-14 09:58:58 +01:00
46db3f7b13
import from graphics
2018-03-13 15:40:10 +01:00
53959d40c7
typo in examples
2018-03-13 14:40:52 +01:00
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
e4b371d30a
add MIC values
...
add badges to readme
2018-03-13 11:57:30 +01:00
4ea0333349
Minor text changes for DDD definition
2018-03-13 11:48:30 +01:00
MS Berends
aae393f2a9
Update .Rbuildignore
2018-03-11 21:20:28 +01:00
MS Berends
692116b4dc
Create .travis.yml
2018-03-11 21:00:11 +01:00
34e70a65ed
added septic_patients
2018-02-27 20:01:02 +01:00
98b2b99913
new atc codes
2018-02-26 16:06:49 +01:00
8a603876d2
misc
2018-02-26 15:53:09 +01:00
915d4db23b
add rows to summary
2018-02-26 14:37:40 +01:00
6fa05fe33b
first isolates
2018-02-26 14:06:31 +01:00
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
be51a95448
rename columns
2018-02-26 10:53:54 +01:00
3f859210d5
new date for push test
2018-02-22 22:04:22 +01:00
11683b082e
EUCAST man pages
2018-02-22 21:42:01 +01:00
10380bcfae
add NEWS
2018-02-22 21:37:10 +01:00
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
77194527b5
readme
2018-02-21 12:21:34 +01:00
MS Berends
942c41ae9c
Update README.md
2018-02-21 12:19:42 +01:00
MS Berends
3cccf9df3f
Update README.md
2018-02-21 12:15:04 +01:00
MS Berends
57d0314780
Update README.md
2018-02-21 12:14:17 +01:00
MS Berends
86c9f2913d
Update README.md
2018-02-21 12:11:07 +01:00
ab0503f8b8
abname, logo
2018-02-21 12:10:00 +01:00
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
