dr. M.S. (Matthijs) Berends
8f674e19bb
(v0.7.0.9005) ab algorithm update
2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends
0a6580b4eb
(v0.6.1.9047) ggplot fix
2019-05-31 20:48:22 +02:00
dr. M.S. (Matthijs) Berends
4c3cf85a65
ab_info, other bug fixes
2019-05-16 21:20:00 +02:00
dr. M.S. (Matthijs) Berends
68cc7ef0d0
new antibiotics
2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends
fbc9191b13
new EUCAST rules algorithm
2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends
c6a12266e7
DSMZ data
2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends
e835525cf6
unknown codes, rsi fix
2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends
2565b60024
rlang dependency, new fungi
2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends
f9ded23023
as.mo improvement
2019-02-26 12:33:26 +01:00
dr. M.S. (Matthijs) Berends
41ad7a22c8
mo_rank mo_url, added Tremellales
2019-02-22 22:12:10 +01:00
dr. M.S. (Matthijs) Berends
fb1fc3686c
Catalogue of life
2019-02-20 00:04:48 +01:00
dr. M.S. (Matthijs) Berends
54f8258f8c
Catalogue of Life, replaces ITIS
2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends
ed30312048
mo codes for WHONET
2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends
6b0f4ffbd4
new kingdom
2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends
92c9cc2608
diff for freq, fix for mo_shortname
2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends
c5073f2fd1
small fix for microorganisms data set
2018-09-06 16:50:03 +02:00
dr. M.S. (Matthijs) Berends
790bd1622d
added vanA to vanE positive Enterococci
2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends
227121af3d
add Dialister to microorganisms
2018-08-03 11:46:06 +02:00
dr. M.S. (Matthijs) Berends
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends
c768ba0d9c
A. lwoffi to A. lwoffii
2018-07-04 17:34:23 +02:00
dr. M.S. (Matthijs) Berends
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
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