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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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67f3f4387b
|
(v0.8.0.9032) fix regex error
|
2019-11-15 16:50:46 +01:00 |
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|
09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
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d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
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54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
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59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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228a4245cb
|
(v0.8.0.9026) appveyor fix
|
2019-11-10 09:26:25 +01:00 |
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a8c48cb2d7
|
(v0.8.0.9025) appveyor fix
|
2019-11-10 09:21:43 +01:00 |
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07f945de53
|
(v0.8.0.9024) appveyor fix
|
2019-11-10 09:04:18 +01:00 |
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e252f68cdb
|
(v0.8.0.9023) appveyor fix
|
2019-11-09 17:13:31 +01:00 |
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32e3a98967
|
(v0.8.0.9022) update vignettes
|
2019-11-09 16:37:41 +01:00 |
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ef640add2d
|
(v0.8.0.9021) update vignettes
|
2019-11-09 11:33:22 +01:00 |
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e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
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be9a3e6b12
|
(v0.8.0.9016) unit test update
|
2019-11-05 23:07:05 +01:00 |
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d19c44a25f
|
(v0.8.0.9015) unit test update
|
2019-11-05 22:42:00 +01:00 |
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a1fd2cd98a
|
(v0.8.0.9014) unit test update
|
2019-11-05 22:23:45 +01:00 |
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2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
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5345d2759a
|
(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
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fe606e287b
|
(v0.8.0.9011) col guess update
|
2019-11-04 12:08:08 +01:00 |
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|
9060233953
|
(v0.8.0.9010) mdro bug fix
|
2019-11-04 11:35:34 +01:00 |
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0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
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29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
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412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
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d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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c01dc8a5b7
|
(v0.8.0.9003) printing fix for AB columns
|
2019-10-23 15:44:11 +02:00 |
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3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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666126cd5e
|
(v0.8.0.9001) guideline text on as.rsi()
|
2019-10-21 14:12:28 +02:00 |
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1b8e2366f7
|
(v0.8.0.9000) website update
|
2019-10-16 22:47:48 +02:00 |
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10e6b225e7
|
(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
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2c0f3534bf
|
(v0.7.1.9106) v0.8.0
|
2019-10-13 09:31:58 +02:00 |
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1736fb62d6
|
(v0.7.1.9105) another try
|
2019-10-12 10:08:55 +02:00 |
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2eb4a42f3d
|
(v0.7.1.9104) vignette fix
|
2019-10-12 09:15:27 +02:00 |
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b2a08d056b
|
(v0.7.1.9103) add lintr to CI
|
2019-10-11 19:16:49 +02:00 |
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00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
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5dbff3e170
|
(v0.7.1.9098) mdro() unit test fix
|
2019-10-07 15:12:42 +02:00 |
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f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
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4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
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1e260d85c8
|
(v0.7.1.9095) get_column_abx() fix
|
2019-10-06 22:19:26 +02:00 |
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3d5692219e
|
(v0.7.1.9094) get_column_abx() improvement
|
2019-10-06 21:44:08 +02:00 |
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b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
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8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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b39e7feae6
|
(v0.7.1.9090) factor levels of mdr_tb
|
2019-09-26 21:58:06 +02:00 |
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b9f01d686e
|
(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
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99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
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04cd0d25db
|
(v0.7.1.9087) small fix
|
2019-09-23 23:09:50 +02:00 |
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38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
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ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
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76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
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8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
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a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
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64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
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57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
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46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
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40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
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|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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|
f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
|
|
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
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06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
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c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
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|
88ee1b7268
|
(v0.7.1.9068) gramstain to freq()
|
2019-08-30 14:50:56 +02:00 |
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34a82d091e
|
(v0.7.1.9067) honor info
|
2019-08-28 17:12:48 +02:00 |
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|
e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
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|
248638ad91
|
(v0.7.1.9065) bug-drug fix
|
2019-08-27 22:41:09 +02:00 |
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|
f3276592b7
|
(v0.7.1.9064) bug-drug fix
|
2019-08-27 19:15:04 +02:00 |
|
|
|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
|
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|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
|
|
|
13d4fef801
|
(v0.7.1.9061) mo_property improvement
|
2019-08-26 10:03:37 +02:00 |
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|
e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
|
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|
7c069145ac
|
(v0.7.1.9058) as.mo() improvement
|
2019-08-20 11:40:54 +02:00 |
|
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|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
|
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|
920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
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|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
|
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|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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|
c44c5e3913
|
(v0.7.1.9037) CI and global env fix
|
2019-08-12 15:34:49 +02:00 |
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bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
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|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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|
3f5828e74a
|
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
|
2019-08-09 23:45:26 +02:00 |
|
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|
6598c5615d
|
(v0.7.1.9033) 5000 new fungi
|
2019-08-09 23:22:10 +02:00 |
|
|
|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
|
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
|
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|
22a206ffd8
|
(v0.7.1.9030) eucast_rules() fix
|
2019-08-08 15:52:07 +02:00 |
|
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|
f67c739892
|
(v0.7.1.9029) unit test
|
2019-08-07 18:56:14 +02:00 |
|
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|
bfa92eb166
|
(v0.7.1.9028) predict update
|
2019-08-07 15:58:32 +02:00 |
|
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|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
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|
14c47da656
|
(v0.7.1.9026) NAMESPACE fix
|
2019-08-06 15:57:51 +02:00 |
|
|
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
|
|
85b62aaf8f
|
(v0.7.1.9023) wrong percentage in as.mo()
|
2019-08-04 17:41:12 +02:00 |
|
|
|
643c5ed807
|
(v0.7.1.9022) CI fix for codecov
|
2019-08-04 11:33:56 +02:00 |
|
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|
d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
|
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|
4f3ef53c78
|
(v0.7.1.9020) CI fix 2
|
2019-08-03 21:51:08 +02:00 |
|
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|
a6606d334c
|
(v0.7.1.9019) CI fix
|
2019-07-30 19:20:13 +02:00 |
|
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|
2a62c3d62a
|
(v0.7.1.9018) deps
|
2019-07-30 13:12:40 +02:00 |
|
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|
ec0ca20dee
|
(v0.7.1.9017) deps
|
2019-07-29 21:20:26 +02:00 |
|
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|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
|
|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
|
|
|
9ac5a34b36
|
(v0.7.1.9014) MO codes update
|
2019-07-16 16:14:11 +02:00 |
|
|
|
c652c6913f
|
(v0.7.1.9013) guess_mo_ab speed improvement
|
2019-07-11 13:39:18 +02:00 |
|
|
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
|
|
b452de2fe4
|
(v0.7.1.9010) eucast informative text in verbose mode
|
2019-07-09 13:36:03 +02:00 |
|
|
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
|
|
d9e257f8db
|
(v0.7.1.9008) ab update
|
2019-07-04 19:08:18 +02:00 |
|
|
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
|
|
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
|
|
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
|
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
|
|
6013fbefae
|
(v0.7.1.9003) website update
|
2019-06-23 21:35:17 +02:00 |
|
|
|
f2d7a19118
|
(v0.7.1.9002) website update
|
2019-06-23 17:44:36 +02:00 |
|
|
|
278244140c
|
(v0.7.0.9015) vignette fix
|
2019-06-22 21:33:13 +02:00 |
|
|
|
b94638d53e
|
(v0.7.0.9014) unit tests
|
2019-06-22 20:14:06 +02:00 |
|
|
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
|
|
409397a337
|
(v0.7.0.9012) unit test
|
2019-06-18 19:28:26 +02:00 |
|
|
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
|
|
980be2b22d
|
(v0.7.0.9009) global note
|
2019-06-13 16:40:35 +02:00 |
|
|
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
|
|
699e87ab4a
|
(v0.7.0.9007) renamed notes fix
|
2019-06-12 16:08:20 +02:00 |
|
|
|
44ab53128e
|
(v0.7.0.9006) ab algorithm fix for ATC codes
|
2019-06-11 15:31:32 +02:00 |
|
|
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
|
|
f6c47c8c88
|
(v0.7.0.9004) pkgdown update
|
2019-06-09 08:57:54 +02:00 |
|
|
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
|
|
f50d3a5ba1
|
(v0.7.0.9002) scale fix
|
2019-06-08 15:00:28 +02:00 |
|
|
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
|
|
04c75e8e36
|
(v0.7.0.9000) new dev version
|
2019-06-03 20:52:24 +02:00 |
|
|
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
|
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
|
|
8de0495008
|
(v0.6.1.9052) website update
|
2019-06-01 21:28:18 +02:00 |
|
|
|
5608b27c7c
|
(v0.6.1.9051) support staged install
|
2019-06-01 20:54:56 +02:00 |
|
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|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
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|
a665612cb8
|
(v0.6.1.9049) data creation fix
|
2019-05-31 21:20:16 +02:00 |
|
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|
4bac768557
|
(v0.6.1.9048) data creation fox
|
2019-05-31 21:01:14 +02:00 |
|
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|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
|
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|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
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|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
|
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
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2019-05-31 14:25:11 +02:00 |
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1f8ee3ec3e
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(v0.6.1.9043) age doc fix
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2019-05-30 08:51:38 +02:00 |
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8b5e2b030b
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added boxplot for (grouped) freq()
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2019-05-29 19:56:17 +02:00 |
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27380fa021
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fixes for microorganisms.codes
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2019-05-28 16:50:40 +02:00 |
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3688fcaabf
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doc fix
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2019-05-23 17:59:43 +02:00 |
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bbf8b611e3
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doc fix
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2019-05-23 17:35:58 +02:00 |
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60983a1640
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added mdr_tb()
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2019-05-23 16:58:59 +02:00 |
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07d26cd485
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faster determination of abx
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2019-05-20 19:12:41 +02:00 |
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6eb08a2ea3
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new git flow to repository
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2019-05-20 14:16:53 +02:00 |
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c3ae6b7699
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freq fix
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2019-05-17 09:09:18 +02:00 |
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4c3cf85a65
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ab_info, other bug fixes
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2019-05-16 21:20:00 +02:00 |
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0dc0715dc6
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CI tests
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2019-05-13 12:21:57 +02:00 |
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68cc7ef0d0
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new antibiotics
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2019-05-10 16:44:59 +02:00 |
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cffb7787d8
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cfta streptococci
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2019-04-09 10:34:40 +02:00 |
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fbc9191b13
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new EUCAST rules algorithm
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2019-04-05 18:47:39 +02:00 |
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429814c29b
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v0.6.0
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2019-03-27 11:22:36 +01:00 |
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29f444543d
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added Becker 2019
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2019-03-26 14:24:03 +01:00 |
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c6a12266e7
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DSMZ data
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2019-03-18 14:29:41 +01:00 |
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fdffc2791b
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memory for as.mo()
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2019-03-15 13:57:25 +01:00 |
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504a042fba
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uncertainty levels, new WHONET codes
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2019-03-12 12:19:27 +01:00 |
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0c0c6e289b
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small as.mo fix
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2019-03-06 14:39:02 +01:00 |
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74e0ae21fd
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con WHONET, filter ab class
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2019-03-05 22:47:42 +01:00 |
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2565b60024
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rlang dependency, new fungi
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2019-02-28 13:56:28 +01:00 |
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f9ded23023
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as.mo improvement
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2019-02-26 12:33:26 +01:00 |
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41ad7a22c8
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mo_rank mo_url, added Tremellales
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2019-02-22 22:12:10 +01:00 |
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fb1fc3686c
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Catalogue of life
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2019-02-20 00:04:48 +01:00 |
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54f8258f8c
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Catalogue of Life, replaces ITIS
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2019-02-18 02:33:37 +01:00 |
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9209787a53
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SPSS tutorial
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2019-02-14 15:18:17 +01:00 |
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76ed26d27e
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resistance predict update
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2019-02-11 10:27:10 +01:00 |
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ed30312048
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mo codes for WHONET
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2019-02-08 16:06:54 +01:00 |
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3efb54d016
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freq update
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2019-01-29 20:20:09 +01:00 |
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6aae206320
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WHONET/EARS-Net support
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2019-01-29 00:06:50 +01:00 |
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f6336fdd89
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quasiquotation for freq()
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2019-01-28 11:20:32 +01:00 |
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e76961a66b
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less deps
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2019-01-27 19:30:40 +01:00 |
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18b75356a9
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re-add atc_ddd and atc_groups
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2019-01-27 13:33:43 +01:00 |
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6ec940bc75
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atc_ functions
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2019-01-27 10:53:59 +01:00 |
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b39055c018
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deprecated fix
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2019-01-27 00:33:58 +01:00 |
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f836722269
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atc_ functions
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2019-01-26 23:22:56 +01:00 |
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f4ff98b470
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WHO update, antibiotics update
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2019-01-25 13:18:41 +01:00 |
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46dcc7e2e8
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set_mo_source
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2019-01-21 15:53:01 +01:00 |
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c6c3088e9f
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select() fix for freq
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2019-01-17 12:08:04 +01:00 |
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046d195064
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resistance predict
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2019-01-15 12:45:24 +01:00 |
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641d866db2
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guess_ab_col, benchmarks
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2019-01-11 20:37:23 +01:00 |
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193a2d2863
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EUCAST update, as.mo bugfix for empty vlaues
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2019-01-08 16:23:45 +01:00 |
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bc15f660d6
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guess_ab()
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2019-01-06 20:23:49 +01:00 |
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6b2d464f8c
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big website update, licence txt update
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2019-01-02 23:24:07 +01:00 |
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df6b334c6f
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website update
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2018-12-30 10:27:28 +01:00 |
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92a32b62a7
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new website, freq updates
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2018-12-29 22:24:19 +01:00 |
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