13 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	6f7730dcaa	add tests using testthat	2018-03-27 17:43:42 +02:00
dr. M.S. (Matthijs) Berends	53464ff1c8	- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive ... - Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore) - Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS - Renamed dataset `bactlist` to `microorganisms`	2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends	fe803f7279	use guess_bactid for GLIMS codes	2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends	c765f424ab	typo	2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends	dd2517ecb7	- Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate` ... - Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore) - Functions `as.rsi` and `as.mic` now add the package name and version as attribute	2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends	502a44eb25	- Added new function guess_bactid to determine the ID of a microorganism based on genus/species ... - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive	2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends	e4b371d30a	add MIC values ... add badges to readme	2018-03-13 11:57:30 +01:00
dr. M.S. (Matthijs) Berends	34e70a65ed	added septic_patients	2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends	6fa05fe33b	first isolates	2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends	d36a391747	export first_isolate	2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends	be51a95448	rename columns	2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends	d8da8daf9a	First CRAN submission edits	2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends	62304dc23f	first commit	2018-02-21 11:52:31 +01:00