1
0
mirror of https://github.com/msberends/AMR.git synced 2026-02-11 07:52:58 +01:00

14 Commits

Author SHA1 Message Date
499c830ee7 (v3.0.1.9020) unit test fixes 2026-02-09 13:16:36 +01:00
ba4c159154 (v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
2df2911cf4 (v3.0.1.9018) fixes #249
updates AB groups
2026-01-16 10:57:03 +01:00
fd50c51543 (v3.0.1.9017) fix documentation 2026-01-08 14:03:02 +01:00
cfd1922dd9 (v3.0.1.9016) fix unit test 2026-01-08 12:29:08 +01:00
7df28bce28 (v3.0.1.9015) fix translations 2026-01-08 10:21:48 +01:00
7b9c151241 (v3.0.1.9014) try-again fix 2026-01-07 15:10:21 +01:00
85e8e814e8 (v3.0.1.9013) fix translations 2026-01-07 13:30:54 +01:00
fa827f27f4 (v3.0.1.9012) fix translations 2026-01-07 11:00:58 +01:00
9d1b4565f6 (v3.0.1.9008) fix #246
Merge branch 'main' of https://github.com/msberends/AMR

# Conflicts:
#	DESCRIPTION
#	NEWS.md
#	R/sysdata.rda
#	data/antibiotics.rda
2026-01-06 23:11:34 +01:00
cfbbfb4fa5 (v3.0.1.9007) fix #246 2026-01-06 23:08:50 +01:00
35debe25ee (v3.0.1.9009) tidymodels vignette 2025-12-23 11:02:26 +01:00
e9cf3d5572 (v3.0.1.9008) tidymodels vignette 2025-12-22 19:04:39 +01:00
a5c6aa9fa8 (v3.0.1.9007) fix vignette 2025-12-22 09:34:58 +01:00
69 changed files with 1125 additions and 703 deletions

View File

@@ -22,9 +22,9 @@ body:
label: Minimal Reproducible Example (optional)
description: Please include a short R code snippet that reproduces the problem, if possible.
placeholder:
e.g.\n\n
```r<br>
ab_name("amoxicillin/clavulanic acid", language = "es")\n
e.g.
```r
ab_name("amoxicillin/clavulanic acid", language = "es")
```
validations:
required: false

View File

@@ -1,6 +1,6 @@
Package: AMR
Version: 3.0.1.9006
Date: 2025-12-21
Version: 3.0.1.9020
Date: 2026-02-09
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by

View File

@@ -214,6 +214,7 @@ export(cephalosporins_4th)
export(cephalosporins_5th)
export(clear_custom_antimicrobials)
export(clear_custom_microorganisms)
export(clsi_rules)
export(count_I)
export(count_IR)
export(count_R)
@@ -244,6 +245,7 @@ export(ggplot_sir_predict)
export(glycopeptides)
export(guess_ab_col)
export(inner_join_microorganisms)
export(interpretive_rules)
export(is.ab)
export(is.av)
export(is.disk)
@@ -321,6 +323,7 @@ export(oxazolidinones)
export(pca)
export(penicillins)
export(phenicols)
export(phosphonics)
export(polymyxins)
export(proportion_I)
export(proportion_IR)
@@ -360,6 +363,7 @@ export(sir_df)
export(sir_interpretation_history)
export(sir_predict)
export(skewness)
export(spiropyrimidinetriones)
export(step_mic_log2)
export(step_sir_numeric)
export(streptogramins)

28
NEWS.md
View File

@@ -1,21 +1,41 @@
# AMR 3.0.1.9006
# AMR 3.0.1.9020
### New
* Integration with the **tidymodels** framework to allow seamless use of SIR, MIC and disk data in modelling pipelines via `recipes`
- `step_mic_log2()` to transform `<mic>` columns with log2, and `step_sir_numeric()` to convert `<sir>` columns to numeric
- New `tidyselect` helpers: `all_sir()`, `all_sir_predictors()`, `all_mic()`, `all_mic_predictors()`, `all_disk()`, `all_disk_predictors()`
- New `tidyselect` helpers:
- `all_sir()`, `all_sir_predictors()`
- `all_mic()`, `all_mic_predictors()`
- `all_disk()`, `all_disk_predictors()`
* Data set `esbl_isolates` to practise with AMR modelling
* AMR selectors `phosphonics()` and `spiropyrimidinetriones()`
* Support for Wildtype (WT) / Non-wildtype (NWT) in `as.sir()`, all plotting functions, and all susceptibility/resistance functions.
- `as.sir()` gained an argument `as_wt_nwt`, which defaults to `TRUE` only when `breakpoint_type = "ECOFF"` (#254)
- This transforms the output from S/R to WT/NWT
- Functions such as `susceptibility()` count WT as S and NWT as R
* `interpretive_rules()`, which allows future implementation of CLSI interpretive rules (#235)
- `eucast_rules()` has become a wrapper around that function.
### Changed
### Fixes
* Fixed a bug in `antibiogram()` for when no antimicrobials are set
* Added taniborbactam (`TAN`) and cefepime/taniborbactam (`FTA`) to the `antimicrobials` data set
* Fixed a bug in `as.sir()` where for numeric input the arguments `S`, `i`, and `R` would not be considered (#244)
* Fixed some foreign translations of antimicrobial drugs
* Fixed a bug for printing column names to the console when using `mutate_at(vars(...), as.mic)` (#249)
* Fixed a bug to disregard `NI` for susceptibility proportion functions
* Fixed Italian translation of CoNS to Stafilococco coagulasi-negativo and CoPS to Stafilococco coagulasi-positivo (#256)
### Updates
* `as.mic()` and `rescale_mic()` gained the argument `round_to_next_log2`, which can be set to `TRUE` to round all values up to the nearest next log2 level (#255)
* `antimicrobials$group` is now a `list` instead of a `character`, to contain any group the drug is in (#246)
* `ab_group()` gained an argument `all_groups` to return all groups the antimicrobial drug is in (#246)
* Added taniborbactam (`TAN`) and cefepime/taniborbactam (`FTA`) to the `antimicrobials` data set
* Added explaining message to `as.sir()` when interpreting numeric values (e.g., 1 for S, 2 for I, 3 for R) (#244)
* Updated handling of capped MIC values (`<`, `<=`, `>`, `>=`) in `as.sir()` in the argument `capped_mic_handling`: (#243)
* Introduced four clearly defined options: `"none"`, `"conservative"` (default), `"standard"`, and `"lenient"`
* Interpretation of capped MIC values now consistently returns `"NI"` (non-interpretable) when the true MIC could be at either side of a breakpoint, depending on the selected handling mode
* This results in more reliable behaviour compared to previous versions for capped MIC values
* Removed the `"inverse"` option, which has now become redundant
* `ab_group()` now returns values consist with the AMR selectors (#246)
# AMR 3.0.1

View File

@@ -34,37 +34,37 @@ EUCAST_VERSION_BREAKPOINTS <- list(
version_txt = "v15.0",
year = 2025,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/clinical_breakpoints/"
url = "https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/"
),
"14.0" = list(
version_txt = "v14.0",
year = 2024,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/clinical_breakpoints/"
url = "https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/"
),
"13.1" = list(
version_txt = "v13.1",
year = 2023,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/clinical_breakpoints/"
url = "https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/"
),
"12.0" = list(
version_txt = "v12.0",
year = 2022,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/clinical_breakpoints/"
url = "https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/"
),
"11.0" = list(
version_txt = "v11.0",
year = 2021,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/clinical_breakpoints/"
url = "https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/"
),
"10.0" = list(
version_txt = "v10.0",
year = 2020,
title = "'EUCAST Clinical Breakpoint Tables'",
url = "https://www.eucast.org/ast_of_bacteria/previous_versions_of_documents/"
url = "https://www.eucast.org/bacteria/document-archive/"
)
)
EUCAST_VERSION_EXPERT_RULES <- list(
@@ -72,19 +72,19 @@ EUCAST_VERSION_EXPERT_RULES <- list(
version_txt = "v3.3",
year = 2021,
title = "'EUCAST Expert Rules' and 'EUCAST Intrinsic Resistance and Unusual Phenotypes'",
url = "https://www.eucast.org/expert_rules_and_expected_phenotypes"
url = "https://www.eucast.org/bacteria/important-additional-information/expert-rules/"
),
"3.2" = list(
version_txt = "v3.2",
year = 2020,
title = "'EUCAST Expert Rules' and 'EUCAST Intrinsic Resistance and Unusual Phenotypes'",
url = "https://www.eucast.org/expert_rules_and_expected_phenotypes"
url = "https://www.eucast.org/bacteria/important-additional-information/expert-rules/"
),
"3.1" = list(
version_txt = "v3.1",
year = 2016,
title = "'EUCAST Expert Rules, Intrinsic Resistance and Exceptional Phenotypes'",
url = "https://www.eucast.org/expert_rules_and_expected_phenotypes"
url = "https://www.eucast.org/bacteria/important-additional-information/expert-rules/"
)
)
EUCAST_VERSION_EXPECTED_PHENOTYPES <- list(
@@ -92,7 +92,7 @@ EUCAST_VERSION_EXPECTED_PHENOTYPES <- list(
version_txt = "v1.2",
year = 2023,
title = "'EUCAST Expected Resistant Phenotypes'",
url = "https://www.eucast.org/expert_rules_and_expected_phenotypes"
url = "https://www.eucast.org/bacteria/important-additional-information/expert-rules/"
)
)

View File

@@ -498,11 +498,6 @@ word_wrap <- function(...,
url = paste0("ide:help:AMR::", gsub("()", "", parts[cmds & parts %like% "[.]"], fixed = TRUE)),
txt = parts[cmds & parts %like% "[.]"]
)
# otherwise, give a 'click to run' popup
parts[cmds & parts %unlike% "[.]"] <- font_url(
url = paste0("ide:run:AMR::", parts[cmds & parts %unlike% "[.]"]),
txt = parts[cmds & parts %unlike% "[.]"]
)
# datasets should give help page as well
parts[parts %in% c("antimicrobials", "microorganisms", "microorganisms.codes", "microorganisms.groups")] <- font_url(
url = paste0("ide:help:AMR::", gsub("()", "", parts[parts %in% c("antimicrobials", "microorganisms", "microorganisms.codes", "microorganisms.groups")], fixed = TRUE)),
@@ -685,8 +680,12 @@ format_included_data_number <- function(data) {
vector_or <- function(v, quotes = TRUE, reverse = FALSE, sort = TRUE, initial_captital = FALSE, last_sep = " or ") {
# makes unique and sorts, and this also removed NAs
v <- unique(v)
has_na <- anyNA(v)
if (isTRUE(sort)) {
v <- sort(v)
if (has_na) {
v <- c(v, NA)
}
}
if (isTRUE(reverse)) {
v <- rev(v)
@@ -708,18 +707,25 @@ vector_or <- function(v, quotes = TRUE, reverse = FALSE, sort = TRUE, initial_ca
# class 'sir' should be sorted like this
v <- c("S", "I", "R")
}
if (identical(v, c("I", "NI", "R", "S", "SDD"))) {
if (identical(v, sort(VALID_SIR_LEVELS))) {
# class 'sir' should be sorted like this
v <- c("S", "SDD", "I", "R", "NI")
v <- VALID_SIR_LEVELS
}
# oxford comma
if (last_sep %in% c(" or ", " and ") && length(v) > 2) {
last_sep <- paste0(",", last_sep)
}
NAs <- which(is.na(v))
if (is.numeric(v)) {
v <- trimws(vapply(FUN.VALUE = character(1), v, format, scientific = FALSE))
}
quoted <- paste0(quotes, v, quotes)
quoted[NAs] <- "NA"
# all commas except for last item, so will become '"val1", "val2", "val3" or "val4"'
paste0(
paste0(quotes, v[seq_len(length(v) - 1)], quotes, collapse = ", "),
last_sep, paste0(quotes, v[length(v)], quotes)
paste(quoted[seq_len(length(quoted) - 1)], collapse = ", "),
last_sep, quoted[length(quoted)]
)
}
@@ -1042,24 +1048,8 @@ get_current_column <- function() {
# cur_column() doesn't always work (only allowed for certain conditions set by dplyr), but it's probably still possible:
frms <- lapply(sys.frames(), function(env) {
if (tryCatch(!is.null(env$i), error = function(e) FALSE)) {
if (!is.null(env$tibble_vars)) {
# for mutate_if()
# TODO remove later, was part of older dplyr versions (at least not in dplyr 1.1.4)
env$tibble_vars[env$i]
} else {
# for mutate(across())
if (!is.null(env$data) && is.data.frame(env$data)) {
df <- env$data
} else {
df <- tryCatch(get_current_data(NA, 0), error = function(e) NULL)
}
if (is.data.frame(df)) {
colnames(df)[env$i]
} else {
env$i
}
}
if (all(c("dots", "i") %in% names(env))) {
names(env$dots)[env$i]
} else {
NULL
}
@@ -1113,11 +1103,14 @@ format_custom_query_rule <- function(query, colours = has_colour()) {
query <- gsub("any\\((.*)\\)$", paste0(font_black("any of "), "\\1"), query)
query <- gsub("all\\((.*)\\)$", paste0(font_black("all of "), "\\1"), query)
if (colours == TRUE) {
query <- gsub("[\"']R[\"']", font_rose_bg(" R "), query)
query <- gsub("[\"']SDD[\"']", font_orange_bg(" SDD "), query)
query <- gsub("[\"']S[\"']", font_green_bg(" S "), query)
query <- gsub("[\"']NI[\"']", font_grey_bg(font_black(" NI ")), query)
query <- gsub("[\"']SDD[\"']", font_orange_bg(" SDD "), query)
query <- gsub("[\"']I[\"']", font_orange_bg(" I "), query)
query <- gsub("[\"']R[\"']", font_rose_bg(" R "), query)
query <- gsub("[\"']NI[\"']", font_grey_bg(font_black(" NI ")), query)
query <- gsub("[\"']WT[\"']", font_green_bg(" SDD "), query)
query <- gsub("[\"']NWT[\"']", font_rose_bg(" I "), query)
query <- gsub("[\"']NS[\"']", font_rose_bg(" R "), query)
}
# replace the black colour 'stops' with blue colour 'starts'
query <- gsub("\033[39m", "\033[34m", as.character(query), fixed = TRUE)

2
R/ab.R
View File

@@ -54,7 +54,7 @@
#' @section Source:
#' World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
#'
#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
#' @aliases ab
#' @return A [character] [vector] with additional class [`ab`]
#' @seealso

View File

@@ -163,11 +163,29 @@ ab_tradenames <- function(x, ...) {
}
#' @rdname ab_property
#' @param all_groups A [logical] to indicate whether all antimicrobial groups must be return as a vector for each input value. For example, an antibiotic in the "aminopenicillins" group, is also in the "penicillins" and "beta-lactams" groups. Setting `all_groups = TRUE` would return all three for such an antibiotic, while `all_groups = FALSE` (default) only returns the most distinctive group name.
#' @export
ab_group <- function(x, language = get_AMR_locale(), ...) {
ab_group <- function(x, language = get_AMR_locale(), all_groups = FALSE, ...) {
meet_criteria(x, allow_NA = TRUE)
language <- validate_language(language)
translate_into_language(ab_validate(x = x, property = "group", ...), language = language, only_affect_ab_names = TRUE)
meet_criteria(all_groups, allow_class = "logical", has_length = 1)
grps <- ab_validate(x = x, property = "group", ...)
for (i in seq_along(grps)) {
if (all_groups == FALSE) {
# take the first match based on ABX_PRIORITY_LIST
grps[[i]] <- grps[[i]][1]
}
if (language != "en") {
grps[[i]] <- translate_into_language(grps[[i]], language = language, only_affect_ab_names = TRUE)
}
}
names(grps) <- x
if (length(grps) == 1 || all_groups == FALSE) {
unname(unlist(grps))
} else {
grps
}
}
#' @rdname ab_property
@@ -282,7 +300,7 @@ ab_info <- function(x, language = get_AMR_locale(), ...) {
ab = as.character(x),
cid = ab_cid(x),
name = ab_name(x, language = language),
group = ab_group(x, language = language),
group = ab_group(x, language = language, all_groups = TRUE),
atc = ab_atc(x),
atc_group1 = ab_atc_group1(x, language = language),
atc_group2 = ab_atc_group2(x, language = language),

View File

@@ -425,6 +425,14 @@ phenicols <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
amr_select_exec("phenicols", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_selectors
#' @export
phosphonics <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("phosphonics", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_selectors
#' @export
polymyxins <- function(only_sir_columns = FALSE, only_treatable = TRUE, return_all = TRUE, ...) {
@@ -450,6 +458,14 @@ rifamycins <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
amr_select_exec("rifamycins", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_selectors
#' @export
spiropyrimidinetriones <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("spiropyrimidinetriones", only_sir_columns = only_sir_columns, return_all = return_all)
}
#' @rdname antimicrobial_selectors
#' @export
streptogramins <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
@@ -685,7 +701,7 @@ amr_select_exec <- function(function_name,
}
# untreatable drugs
untreatable <- AMR_env$AB_lookup$ab[which(AMR_env$AB_lookup$name %like% "(-high|EDTA|polysorbate|macromethod|screening|nacubactam)")]
untreatable <- AMR_env$AB_lookup$ab[which(AMR_env$AB_lookup$name %like% "(-high|EDTA|polysorbate|macromethod|screening|nacubactam|inducible)")]
if (!is.null(vars_df) && only_treatable == TRUE) {
if (any(untreatable %in% names(ab_in_data))) {
if (message_not_thrown_before(function_name, "amr_class", "untreatable")) {
@@ -713,9 +729,9 @@ amr_select_exec <- function(function_name,
if (is.null(amr_class_args) || isTRUE(function_name %in% c("antifungals", "antimycobacterials"))) {
ab_group <- NULL
if (isTRUE(function_name == "antifungals")) {
abx <- AMR_env$AB_lookup$ab[which(AMR_env$AB_lookup$group == "Antifungals")]
abx <- AMR_env$AB_lookup$ab[which(vapply(FUN.VALUE = logical(1), AMR_env$AB_lookup$group, function(x) "Antifungals" %in% x))]
} else if (isTRUE(function_name == "antimycobacterials")) {
abx <- AMR_env$AB_lookup$ab[which(AMR_env$AB_lookup$group == "Antimycobacterials")]
abx <- AMR_env$AB_lookup$ab[which(vapply(FUN.VALUE = logical(1), AMR_env$AB_lookup$group, function(x) "Antimycobacterials" %in% x))]
} else {
# their upper case equivalent are vectors with class 'ab', created in data-raw/_pre_commit_checks.R
# carbapenems() gets its codes from AMR:::AB_CARBAPENEMS
@@ -723,7 +739,11 @@ amr_select_exec <- function(function_name,
# manually added codes from add_custom_antimicrobials() must also be supported
if (length(AMR_env$custom_ab_codes) > 0) {
custom_ab <- AMR_env$AB_lookup[which(AMR_env$AB_lookup$ab %in% AMR_env$custom_ab_codes), ]
check_string <- paste0(custom_ab$group, custom_ab$atc_group1, custom_ab$atc_group2)
check_string <- paste0(
vapply(FUN.VALUE = character(1), custom_ab$group, function(x) paste(x, collapse = " ")),
custom_ab$atc_group1,
custom_ab$atc_group2
)
if (function_name == "betalactams") {
find_group <- "beta[-]?lactams"
} else if (function_name %like% "cephalosporins_") {
@@ -819,10 +839,10 @@ c.amr_selector <- function(...) {
all_any_amr_selector <- function(type, ..., na.rm = TRUE) {
cols_ab <- c(...)
result <- cols_ab[toupper(cols_ab) %in% c("S", "SDD", "I", "R", "NI")]
result <- cols_ab[toupper(cols_ab) %in% VALID_SIR_LEVELS]
if (length(result) == 0) {
message_("Filtering ", type, " of columns ", vector_and(font_bold(cols_ab, collapse = NULL), quotes = "'"), ' to contain value "S", "I" or "R"')
result <- c("S", "SDD", "I", "R", "NI")
result <- VALID_SIR_LEVELS
}
cols_ab <- cols_ab[!cols_ab %in% result]
df <- get_current_data(arg_name = NA, call = -3)
@@ -931,7 +951,7 @@ any.amr_selector_any_all <- function(..., na.rm = FALSE) {
}
}
# this is `!=`, so turn around the values
sir <- c("S", "SDD", "I", "R", "NI")
sir <- VALID_SIR_LEVELS
e2 <- sir[sir != e2]
structure(all_any_amr_selector(type = type, e1, e2),
class = c("amr_selector_any_all", "logical")
@@ -1001,11 +1021,11 @@ find_ab_names <- function(ab_group, n = 3) {
# try popular first, they have DDDs
drugs <- AMR_env$AB_lookup[which((!is.na(AMR_env$AB_lookup$iv_ddd) | !is.na(AMR_env$AB_lookup$oral_ddd)) &
AMR_env$AB_lookup$name %unlike% " " &
AMR_env$AB_lookup$group %like% ab_group &
vapply(FUN.VALUE = character(1), AMR_env$AB_lookup$group, function(x) paste(x, collapse = " ")) %like% ab_group &
AMR_env$AB_lookup$ab %unlike% "[0-9]$"), ]$name
if (length(drugs) < n) {
# now try it all
drugs <- AMR_env$AB_lookup[which((AMR_env$AB_lookup$group %like% ab_group |
drugs <- AMR_env$AB_lookup[which((vapply(FUN.VALUE = character(1), AMR_env$AB_lookup$group, function(x) paste(x, collapse = " ")) %like% ab_group |
AMR_env$AB_lookup$atc_group1 %like% ab_group |
AMR_env$AB_lookup$atc_group2 %like% ab_group) &
AMR_env$AB_lookup$ab %unlike% "[0-9]$"), ]$name

View File

@@ -560,12 +560,11 @@ antibiogram.default <- function(x,
next
} else {
# determine whether this new column should contain S, I, R, or NA
S_values <- c("S", "WT")
if (isTRUE(combine_SI)) {
S_values <- c("S", "SDD", "I")
} else {
S_values <- "S"
S_values <- c(S_values, "SDD", "I")
}
other_values <- setdiff(c("S", "SDD", "I", "R"), S_values)
other_values <- setdiff(c("S", "SDD", "I", "R", "WT", "NWT", "NS"), S_values)
x_transposed <- as.list(as.data.frame(t(x[, abx, drop = FALSE]), stringsAsFactors = FALSE))
if (isTRUE(only_all_tested)) {
x[new_colname] <- as.sir(vapply(FUN.VALUE = character(1), x_transposed, function(x) ifelse(anyNA(x), NA_character_, ifelse(any(x %in% S_values), "S", "R")), USE.NAMES = FALSE))
@@ -584,7 +583,7 @@ antibiogram.default <- function(x,
if (length(existing_ab_combined_cols) > 0 && !is.null(ab_transform)) {
ab_transform <- NULL
warning_(
"Detected column name(s) containing the '+' character, which conflicts with the expected syntax in `antibiogram()`: the '+' is used to combine separate antimicrobial agent columns (e.g., \"AMP+GEN\").\n\n",
"Detected column name(s) containing the '+' character, which conflicts with the expected syntax in `antibiogram()`: the '+' is used to combine separate antimicrobial drug columns (e.g., \"AMP+GEN\").\n\n",
"To avoid incorrectly guessing which antimicrobials this represents, `ab_transform` was automatically set to `NULL`.\n\n",
"If this is unintended, please rename the column(s) to avoid using '+' in the name, or set `ab_transform = NULL` explicitly to suppress this message."
)
@@ -615,10 +614,9 @@ antibiogram.default <- function(x,
counts <- out
out$n_susceptible <- out$S + out$WT
if (isTRUE(combine_SI)) {
out$n_susceptible <- out$S + out$I + out$SDD
} else {
out$n_susceptible <- out$S
out$n_susceptible <- out$n_susceptible + out$I + out$SDD
}
if (all(out$n_tested < minimum, na.rm = TRUE) && wisca == FALSE) {
warning_("All combinations had less than `minimum = ", minimum, "` results, returning an empty antibiogram")

2
R/av.R
View File

@@ -51,7 +51,7 @@
#' @section Source:
#' World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
#'
#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
#' European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
#' @aliases av
#' @return A [character] [vector] with additional class [`ab`]
#' @seealso

View File

@@ -43,7 +43,7 @@
#' @details The function [format()] calculates the resistance per bug-drug combination and returns a table ready for reporting/publishing. Use `combine_SI = TRUE` (default) to test R vs. S+I and `combine_SI = FALSE` to test R+I vs. S. This table can also directly be used in R Markdown / Quarto without the need for e.g. [knitr::kable()].
#' @export
#' @rdname bug_drug_combinations
#' @return The function [bug_drug_combinations()] returns a [data.frame] with columns "mo", "ab", "S", "SDD", "I", "R", and "total".
#' @return The function [bug_drug_combinations()] returns a [data.frame] with columns "mo", "ab", "S", "SDD", "I", "R", "WT, "NWT", and "total".
#' @examples
#' # example_isolates is a data set available in the AMR package.
#' # run ?example_isolates for more info.
@@ -111,6 +111,8 @@ bug_drug_combinations <- function(x,
SDD = integer(0),
I = integer(0),
R = integer(0),
WT = integer(0),
NWT = integer(0),
total = integer(0),
total_rows = integer(0),
stringsAsFactors = FALSE
@@ -133,6 +135,9 @@ bug_drug_combinations <- function(x,
I = m["I", ],
R = m["R", ],
NI = m["NI", ],
WT = m["WT", ],
NWT = m["NWT", ],
NS = m["NS", ],
na = m[which(is.na(rownames(m))), ],
stringsAsFactors = FALSE
)
@@ -146,8 +151,11 @@ bug_drug_combinations <- function(x,
I = merged$I,
R = merged$R,
NI = merged$NI,
total = merged$S + merged$SDD + merged$I + merged$R + merged$NI,
total_rows = merged$S + merged$SDD + merged$I + merged$R + merged$NI + merged$na,
WT = merged$WT,
NWT = merged$NWT,
NS = merged$NS,
total = merged$S + merged$SDD + merged$I + merged$R + merged$NI + merged$WT + merged$NWT + merged$NS,
total_rows = merged$S + merged$SDD + merged$I + merged$R + merged$NI + merged$WT + merged$NWT + merged$NS + merged$na,
stringsAsFactors = FALSE
)
if (data_has_groups) {
@@ -229,12 +237,17 @@ format.bug_drug_combinations <- function(x,
I = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$I[i], na.rm = TRUE)),
R = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$R[i], na.rm = TRUE)),
NI = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$NI[i], na.rm = TRUE)),
WT = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$WT[i], na.rm = TRUE)),
NWT = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$NWT[i], na.rm = TRUE)),
NS = vapply(FUN.VALUE = double(1), idx, function(i) sum(x$NS[i], na.rm = TRUE)),
total = vapply(FUN.VALUE = double(1), idx, function(i) {
sum(x$S[i], na.rm = TRUE) +
sum(x$SDD[i], na.rm = TRUE) +
sum(x$I[i], na.rm = TRUE) +
sum(x$R[i], na.rm = TRUE) +
sum(x$NI[i], na.rm = TRUE)
sum(x$WT[i], na.rm = TRUE) +
sum(x$NWT[i], na.rm = TRUE) +
sum(x$NS[i], na.rm = TRUE)
}),
stringsAsFactors = FALSE
)
@@ -246,10 +259,10 @@ format.bug_drug_combinations <- function(x,
if (remove_intrinsic_resistant == TRUE) {
x <- subset(x, R != total)
}
x$isolates <- x$R + x$NWT
if (combine_SI == TRUE) {
x$isolates <- x$R
} else {
x$isolates <- x$R + x$I + x$SDD
x$isolates <- x$isolates + x$I + x$SDD
}
give_ab_name <- function(ab, format, language) {

View File

@@ -122,7 +122,7 @@
count_resistant <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = "R",
ab_result = c("R", "NWT", "NS"),
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -135,7 +135,7 @@ count_resistant <- function(..., only_all_tested = FALSE) {
count_susceptible <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("S", "SDD", "I"),
ab_result = c("S", "SDD", "I", "WT"),
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -161,7 +161,7 @@ count_S <- function(..., only_all_tested = FALSE) {
count_SI <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("S", "SDD", "I"),
ab_result = c("S", "SDD", "I", "WT"),
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -187,7 +187,7 @@ count_I <- function(..., only_all_tested = FALSE) {
count_IR <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("I", "SDD", "R"),
ab_result = c("I", "SDD", "R", "NWT"),
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -200,7 +200,7 @@ count_IR <- function(..., only_all_tested = FALSE) {
count_R <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = "R",
ab_result = c("R", "NWT", "NS"),
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -213,7 +213,7 @@ count_R <- function(..., only_all_tested = FALSE) {
count_all <- function(..., only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("S", "SDD", "I", "R", "NI"),
ab_result = VALID_SIR_LEVELS,
only_all_tested = only_all_tested,
only_count = TRUE
),

View File

@@ -220,8 +220,8 @@ custom_eucast_rules <- function(...) {
result_value <- as.character(result)[[3]]
result_value[result_value == "NA"] <- NA
stop_ifnot(
result_value %in% c("S", "SDD", "I", "R", "NI", NA),
"the resulting value of rule ", i, " must be either \"S\", \"SDD\", \"I\", \"R\", \"NI\" or NA"
result_value %in% c(VALID_SIR_LEVELS, NA),
paste0("the resulting value of rule ", i, " must be either ", vector_or(c(VALID_SIR_LEVELS, NA), sort = FALSE))
)
result_value <- as.sir(result_value)

View File

@@ -38,7 +38,7 @@
#' - `ab`\cr antimicrobial ID as used in this package (such as `AMC`), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available. ***This is a unique identifier.***
#' - `cid`\cr Compound ID as found in PubChem. ***This is a unique identifier.***
#' - `name`\cr Official name as used by WHONET/EARS-Net or the WHO. ***This is a unique identifier.***
#' - `group`\cr A short and concise group name, based on WHONET and WHOCC definitions
#' - `group`\cr One or more short and concise group names, based on WHONET and WHOCC definitions
#' - `atc`\cr ATC codes (Anatomical Therapeutic Chemical) as defined by the WHOCC, like `J01CR02` (last updated `r documentation_date(TAXONOMY_VERSION$ATC_DDD$accessed_date)`):
#' - `atc_group1`\cr Official pharmacological subgroup (3rd level ATC code) as defined by the WHOCC, like `"Macrolides, lincosamides and streptogramins"`
#' - `atc_group2`\cr Official chemical subgroup (4th level ATC code) as defined by the WHOCC, like `"Macrolides"`
@@ -368,7 +368,7 @@
#' @format A [tibble][tibble::tibble] with `r format(nrow(esbl_isolates), big.mark = " ")` observations and `r ncol(esbl_isolates)` variables:
#' - `esbl`\cr Logical indicator if the isolate is ESBL-producing
#' - `genus`\cr Genus of the microorganism
#' - `AMC:COL`\cr MIC values for 17 antimicrobial agents, transformed to class [`mic`] (see [as.mic()])
#' - `AMC:COL`\cr MIC values for 17 antimicrobial drugs, transformed to class [`mic`] (see [as.mic()])
#' @details See our [tidymodels integration][amr-tidymodels] for an example using this data set.
#' @examples
#' esbl_isolates

View File

@@ -121,7 +121,7 @@ as.disk <- function(x, na.rm = FALSE) {
cur_col <- get_current_column()
warning_("in `as.disk()`: ", na_after - na_before, " result",
ifelse(na_after - na_before > 1, "s", ""),
ifelse(is.null(cur_col), "", paste0(" in index '", cur_col, "'")),
ifelse(is.null(cur_col), "", paste0(" in column '", cur_col, "'")),
" truncated (",
round(((na_after - na_before) / length(x)) * 100),
"%) that were invalid disk zones: ",

View File

@@ -246,7 +246,7 @@ first_isolate <- function(x = NULL,
FUN.VALUE = logical(1),
X = x,
# check only first 10,000 rows
FUN = function(x) any(as.character(x[1:10000]) %in% c("S", "SDD", "I", "R", "NI"), na.rm = TRUE),
FUN = function(x) any(as.character(x[1:10000]) %in% VALID_SIR_LEVELS, na.rm = TRUE),
USE.NAMES = FALSE
))
if (method == "phenotype-based" && !any_col_contains_sir) {

View File

@@ -53,15 +53,21 @@ format_eucast_version_nr <- function(version, markdown = TRUE) {
vector_and(txt, quotes = FALSE)
}
#' Apply EUCAST Rules
#' Apply Interpretive Rules
#'
#' @description
#' Apply rules from clinical breakpoints notes and expected resistant phenotypes as defined by the European Committee on Antimicrobial Susceptibility Testing (EUCAST, <https://www.eucast.org>), see *Source*. Use [eucast_dosage()] to get a [data.frame] with advised dosages of a certain bug-drug combination, which is based on the [dosage] data set.
#' **WORK IN PROGRESS**
#'
#' To improve the interpretation of the antibiogram before EUCAST rules are applied, some non-EUCAST rules can applied at default, see *Details*.
# TODO Remove this remark before next release
#' **The `interpretive_rules()` function is new, to allow CLSI 'rules' too. The old `eucast_rules()` function will stay as a wrapper, but we need to generalise more parts of the underlying code to allow more than just EUCAST.**
#'
#' Apply rules from clinical breakpoints notes and expected resistant phenotypes as defined by e.g. the European Committee on Antimicrobial Susceptibility Testing (EUCAST, <https://www.eucast.org>), see *Source*. Use [eucast_dosage()] to get a [data.frame] with advised dosages of a certain bug-drug combination, which is based on the [dosage] data set.
#'
#' To improve the interpretation of the antibiogram before CLSI/EUCAST interpretive rules are applied, some AMR-specific rules can be applied at default, see *Details*.
#' @param x A data set with antimicrobials columns, such as `amox`, `AMX` and `AMC`.
#' @param info A [logical] to indicate whether progress should be printed to the console - the default is only print while in interactive sessions.
#' @param rules A [character] vector that specifies which rules should be applied. Must be one or more of `"breakpoints"`, `"expected_phenotypes"`, `"expert"`, `"other"`, `"custom"`, `"all"`, and defaults to `c("breakpoints", "expected_phenotypes")`. The default value can be set to another value using the package option [`AMR_eucastrules`][AMR-options]: `options(AMR_eucastrules = "all")`. If using `"custom"`, be sure to fill in argument `custom_rules` too. Custom rules can be created with [custom_eucast_rules()].
#' @param guideline A guideline name, either "EUCAST" (default) or "CLSI". This can be set with the package option [`AMR_guideline`][AMR-options].
#' @param rules A [character] vector that specifies which rules should be applied. Must be one or more of `"breakpoints"`, `"expected_phenotypes"`, `"expert"`, `"other"`, `"custom"`, `"all"`, and defaults to `c("breakpoints", "expected_phenotypes")`. The default value can be set to another value using the package option [`AMR_interpretive_rules`][AMR-options]: `options(AMR_interpretive_rules = "all")`. If using `"custom"`, be sure to fill in argument `custom_rules` too. Custom rules can be created with [custom_eucast_rules()].
#' @param verbose A [logical] to turn Verbose mode on and off (default is off). In Verbose mode, the function does not apply rules to the data, but instead returns a data set in logbook form with extensive info about which rows and columns would be effected and in which way. Using Verbose mode takes a lot more time.
#' @param version_breakpoints The version number to use for the EUCAST Clinical Breakpoints guideline. Can be `r vector_or(names(EUCAST_VERSION_BREAKPOINTS), reverse = TRUE)`.
#' @param version_expected_phenotypes The version number to use for the EUCAST Expected Phenotypes. Can be `r vector_or(names(EUCAST_VERSION_EXPECTED_PHENOTYPES), reverse = TRUE)`.
@@ -100,9 +106,9 @@ format_eucast_version_nr <- function(version, markdown = TRUE) {
#'
#' Important examples include amoxicillin and amoxicillin/clavulanic acid, and trimethoprim and trimethoprim/sulfamethoxazole. Needless to say, for these rules to work, both drugs must be available in the data set.
#'
#' Since these rules are not officially approved by EUCAST, they are not applied at default. To use these rules, include `"other"` to the `rules` argument, or use `eucast_rules(..., rules = "all")`. You can also set the package option [`AMR_eucastrules`][AMR-options], i.e. run `options(AMR_eucastrules = "all")`.
#' Since these rules are not officially approved by EUCAST, they are not applied at default. To use these rules, include `"other"` to the `rules` argument, or use `eucast_rules(..., rules = "all")`. You can also set the package option [`AMR_interpretive_rules`][AMR-options], i.e. run `options(AMR_interpretive_rules = "all")`.
#' @aliases EUCAST
#' @rdname eucast_rules
#' @rdname interpretive_rules
#' @export
#' @return The input of `x`, possibly with edited values of antimicrobials. Or, if `verbose = TRUE`, a [data.frame] with all original and new values of the affected bug-drug combinations.
#' @source
@@ -156,21 +162,23 @@ format_eucast_version_nr <- function(version, markdown = TRUE) {
#' eucast_dosage(c("tobra", "genta", "cipro"), "iv")
#'
#' eucast_dosage(c("tobra", "genta", "cipro"), "iv", version_breakpoints = 10)
eucast_rules <- function(x,
col_mo = NULL,
info = interactive(),
rules = getOption("AMR_eucastrules", default = c("breakpoints", "expected_phenotypes")),
verbose = FALSE,
version_breakpoints = 15.0,
version_expected_phenotypes = 1.2,
version_expertrules = 3.3,
ampc_cephalosporin_resistance = NA,
only_sir_columns = any(is.sir(x)),
custom_rules = NULL,
overwrite = FALSE,
...) {
interpretive_rules <- function(x,
col_mo = NULL,
info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints", "expected_phenotypes")),
guideline = getOption("AMR_guideline", "EUCAST"),
verbose = FALSE,
version_breakpoints = 15.0,
version_expected_phenotypes = 1.2,
version_expertrules = 3.3,
ampc_cephalosporin_resistance = NA,
only_sir_columns = any(is.sir(x)),
custom_rules = NULL,
overwrite = FALSE,
...) {
meet_criteria(x, allow_class = "data.frame")
meet_criteria(col_mo, allow_class = "character", has_length = 1, is_in = colnames(x), allow_NULL = TRUE)
meet_criteria(guideline, allow_class = "character", has_length = 1, is_in = c("EUCAST", "CLSI"))
meet_criteria(info, allow_class = "logical", has_length = 1)
meet_criteria(rules, allow_class = "character", has_length = c(1, 2, 3, 4, 5, 6), is_in = c("breakpoints", "expected_phenotypes", "expert", "other", "all", "custom"))
meet_criteria(verbose, allow_class = "logical", has_length = 1)
@@ -182,6 +190,11 @@ eucast_rules <- function(x,
meet_criteria(custom_rules, allow_class = "custom_eucast_rules", allow_NULL = TRUE)
meet_criteria(overwrite, allow_class = "logical", has_length = 1)
stop_if(
guideline == "CLSI",
"CLSI guideline is not yet supported."
)
stop_if(
!is.na(ampc_cephalosporin_resistance) && !any(c("expert", "all") %in% rules),
"For the `ampc_cephalosporin_resistance` argument to work, the `rules` argument must contain `\"expert\"` or `\"all\"`."
@@ -1092,6 +1105,29 @@ eucast_rules <- function(x,
}
}
#' @rdname interpretive_rules
#' @export
eucast_rules <- function(x,
col_mo = NULL,
info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints", "expected_phenotypes")),
...) {
if (!is.null(getOption("AMR_eucastrules", default = NULL))) {
warning_("The global option `AMR_eucastrules` that you have set is now invalid was ignored - set `AMR_interpretive_rules` instead. See `?AMR-options`.")
}
interpretive_rules(x = x, col_mo = col_mo, info = info, rules = rules, guideline = "EUCAST", ...)
}
#' @rdname interpretive_rules
#' @export
clsi_rules <- function(x,
col_mo = NULL,
info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints", "expected_phenotypes")),
...) {
interpretive_rules(x = x, col_mo = col_mo, info = info, rules = rules, guideline = "CLSI", ...)
}
# helper function for editing the table ----
edit_sir <- function(x,
to,
@@ -1131,7 +1167,7 @@ edit_sir <- function(x,
track_changes$sir_warn <- cols[!vapply(FUN.VALUE = logical(1), x[, cols, drop = FALSE], is.sir)]
}
isNA <- is.na(new_edits[rows, cols])
isSIR <- !isNA & (new_edits[rows, cols] == "S" | new_edits[rows, cols] == "I" | new_edits[rows, cols] == "R" | new_edits[rows, cols] == "SDD" | new_edits[rows, cols] == "NI")
isSIR <- !isNA & (new_edits[rows, cols] == "S" | new_edits[rows, cols] == "I" | new_edits[rows, cols] == "R" | new_edits[rows, cols] == "SDD" | new_edits[rows, cols] == "NI" | new_edits[rows, cols] == "WT" | new_edits[rows, cols] == "NWT" | new_edits[rows, cols] == "NS")
non_SIR <- !isSIR
if (isFALSE(overwrite) && any(isSIR) && message_not_thrown_before("edit_sir.warning_overwrite")) {
warning_("Some values had SIR values and were not overwritten, since `overwrite = FALSE`.")
@@ -1230,7 +1266,7 @@ edit_sir <- function(x,
return(track_changes)
}
#' @rdname eucast_rules
#' @rdname interpretive_rules
#' @export
eucast_dosage <- function(ab, administration = "iv", version_breakpoints = 15) {
meet_criteria(ab, allow_class = c("character", "numeric", "integer", "factor"))

View File

@@ -282,6 +282,9 @@ generate_antimicrobials_string <- function(df) {
function(x) {
x <- toupper(as.character(x))
x[x == "SDD"] <- "I"
x[x == "WT"] <- "S"
x[x == "NWT"] <- "R"
x[x == "NS"] <- "R"
# ignore "NI" here, no use for determining first isolates
x[!x %in% c("S", "I", "R")] <- "."
paste(x)
@@ -312,9 +315,7 @@ antimicrobials_equal <- function(y,
key2sir <- function(val) {
val <- strsplit(val, "", fixed = TRUE)[[1L]]
val.int <- rep(NA_real_, length(val))
val.int[val == "S"] <- 1
val.int[val %in% c("I", "SDD")] <- 2
val.int[val == "R"] <- 3
val.int[val %in% VALID_SIR_LEVELS] <- as.double(as.sir(val[val %in% VALID_SIR_LEVELS]))
val.int
}
# only run on uniques

View File

@@ -777,7 +777,7 @@ mdro <- function(x = NULL,
sum(vapply(
FUN.VALUE = logical(1),
group_tbl,
function(group) any(unlist(x[row, group[!is.na(group)], drop = TRUE]) %in% c("S", "SDD", "I", "R"))
function(group) any(unlist(x[row, group[!is.na(group)], drop = TRUE]) %in% VALID_SIR_LEVELS[VALID_SIR_LEVELS != "NI"])
))
}
)

36
R/mic.R
View File

@@ -63,6 +63,7 @@ COMMON_MIC_VALUES <- c(
#' @param x A [character] or [numeric] vector.
#' @param na.rm A [logical] indicating whether missing values should be removed.
#' @param keep_operators A [character] specifying how to handle operators (such as `>` and `<=`) in the input. Accepts one of three values: `"all"` (or `TRUE`) to keep all operators, `"none"` (or `FALSE`) to remove all operators, or `"edges"` to keep operators only at both ends of the range.
#' @param round_to_next_log2 A [logical] to round up all values to the next log2 level, that are not either `r vector_or(COMMON_MIC_VALUES, quotes = F)`. Values that are already in this list (with or without operators), are left unchanged (including any operators).
#' @param ... Arguments passed on to methods.
#' @details To interpret MIC values as SIR values, use [as.sir()] on MIC values. It supports guidelines from EUCAST (`r min(as.integer(gsub("[^0-9]", "", subset(clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`) and CLSI (`r min(as.integer(gsub("[^0-9]", "", subset(clinical_breakpoints, guideline %like% "CLSI")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(clinical_breakpoints, guideline %like% "CLSI")$guideline)))`).
#'
@@ -157,10 +158,12 @@ COMMON_MIC_VALUES <- c(
#' if (require("ggplot2")) {
#' autoplot(mic_data, mo = "E. coli", ab = "cipro", language = "nl") # Dutch
#' }
as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
as.mic <- function(x, na.rm = FALSE, keep_operators = "all", round_to_next_log2 = FALSE) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(na.rm, allow_class = "logical", has_length = 1)
meet_criteria(keep_operators, allow_class = c("character", "logical"), is_in = c("all", "none", "edges", FALSE, TRUE), has_length = 1)
meet_criteria(round_to_next_log2, allow_class = "logical", has_length = 1)
if (isTRUE(keep_operators)) {
keep_operators <- "all"
} else if (isFALSE(keep_operators)) {
@@ -168,6 +171,9 @@ as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
}
if (is.mic(x) && (keep_operators == "all" || !any(x %like% "[>=<]", na.rm = TRUE))) {
if (isTRUE(round_to_next_log2)) {
x <- roundup_to_nearest_log2(x)
}
if (!identical(levels(x), VALID_MIC_LEVELS)) {
# might be from an older AMR version - just update MIC factor levels
x <- set_clean_class(factor(as.character(x), levels = VALID_MIC_LEVELS, ordered = TRUE),
@@ -260,7 +266,7 @@ as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
cur_col <- get_current_column()
warning_("in `as.mic()`: ", na_after - na_before, " result",
ifelse(na_after - na_before > 1, "s", ""),
ifelse(is.null(cur_col), "", paste0(" in index '", cur_col, "'")),
ifelse(is.null(cur_col), "", paste0(" in column '", cur_col, "'")),
" truncated (",
round(((na_after - na_before) / length(x)) * 100),
"%) that were invalid MICs: ",
@@ -279,6 +285,10 @@ as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
x[!x %in% keep] <- gsub("[>=<]", "", x[!x %in% keep])
}
if (isTRUE(round_to_next_log2)) {
x <- roundup_to_nearest_log2(x)
}
set_clean_class(factor(x, levels = VALID_MIC_LEVELS, ordered = TRUE),
new_class = c("mic", "ordered", "factor")
)
@@ -305,7 +315,7 @@ NA_mic_ <- set_clean_class(factor(NA, levels = VALID_MIC_LEVELS, ordered = TRUE)
#' @rdname as.mic
#' @param mic_range A manual range to rescale the MIC values, e.g., `mic_range = c(0.001, 32)`. Use `NA` to prevent rescaling on one side, e.g., `mic_range = c(NA, 32)`.
#' @export
rescale_mic <- function(x, mic_range, keep_operators = "edges", as.mic = TRUE) {
rescale_mic <- function(x, mic_range, keep_operators = "edges", as.mic = TRUE, round_to_next_log2 = FALSE) {
meet_criteria(mic_range, allow_class = c("numeric", "integer", "logical", "mic"), has_length = 2, allow_NA = TRUE, allow_NULL = TRUE)
if (is.numeric(mic_range)) {
mic_range <- trimws(format(mic_range, scientific = FALSE))
@@ -336,7 +346,7 @@ rescale_mic <- function(x, mic_range, keep_operators = "edges", as.mic = TRUE) {
x[x > max_mic] <- max_mic
}
x <- as.mic(x, keep_operators = ifelse(keep_operators == "edges", "none", keep_operators))
x <- as.mic(x, keep_operators = ifelse(keep_operators == "edges", "none", keep_operators), round_to_next_log2 = round_to_next_log2)
if (isTRUE(as.mic)) {
if (keep_operators == "edges" && length(unique(x)) > 1) {
@@ -605,6 +615,24 @@ get_skimmers.mic <- function(column) {
)
}
roundup_to_nearest_log2 <- function(x) {
x_dbl <- suppressWarnings(as.double(gsub("[>=<]", "", x)))
x_new <- vapply(
FUN.VALUE = double(1),
x_dbl,
function(val) {
if (is.na(val)) {
NA_real_
} else {
COMMON_MIC_VALUES[which(COMMON_MIC_VALUES >= val)][1]
}
}
)
x[!x_dbl %in% COMMON_MIC_VALUES] <- x_new[!x_dbl %in% COMMON_MIC_VALUES]
x
}
# Miscellaneous mathematical functions ------------------------------------
#' @method mean mic

View File

@@ -399,7 +399,12 @@ create_scale_sir <- function(aesthetics, colours_SIR, language, eucast_I, ...) {
args,
list(
aesthetics = aesthetics,
values = c(colours_SIR, NI = "grey30")
values = c(colours_SIR,
NI = "grey30",
WT = unname(colours_SIR[1]),
NWT = unname(colours_SIR[4]),
NS = unname(colours_SIR[4])
)
)
)
}
@@ -424,6 +429,9 @@ create_scale_sir <- function(aesthetics, colours_SIR, language, eucast_I, ...) {
x[x == "SI"] <- "(S/I) Susceptible"
x[x == "IR"] <- "(I/R) Non-susceptible"
x[x == "NI"] <- "(NI) Non-interpretable"
x[x == "WT"] <- "(WT) Wildtype"
x[x == "NWT"] <- "(NWT) Non-wildtype"
x[x == "NS"] <- "(NS) Non-susceptible"
x <- translate_AMR(x, language = language)
}
x
@@ -537,11 +545,16 @@ plot.mic <- function(x,
meet_criteria(colours_SIR, allow_class = "character", has_length = c(1, 3, 4))
language <- validate_language(language)
meet_criteria(expand, allow_class = "logical", has_length = 1)
meet_criteria(include_PKPD, allow_class = "logical", has_length = 1)
meet_criteria(breakpoint_type, allow_class = "character", is_in = AMR::clinical_breakpoints$type, has_length = 1)
x <- as.mic(x) # make sure that currently implemented MIC levels are used
main <- gsub(" +", " ", paste0(main, collapse = " "))
colours_SIR <- expand_SIR_colours(colours_SIR)
# wildtype/Non-wildtype
is_wt_nwt <- identical(breakpoint_type, "ECOFF")
x <- plotrange_as_table(x, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
@@ -572,10 +585,14 @@ plot.mic <- function(x,
if (any(colours_SIR %in% cols_sub$cols)) {
legend_txt <- character(0)
legend_col <- character(0)
if (any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
if (!is_wt_nwt & any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(S) Susceptible")
legend_col <- colours_SIR[1]
}
if (is_wt_nwt & any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(WT) Wildtype")
legend_col <- colours_SIR[1]
}
if (any(cols_sub$cols == colours_SIR[2] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(SDD) Susceptible dose-dependent")
legend_col <- c(legend_col, colours_SIR[2])
@@ -584,10 +601,14 @@ plot.mic <- function(x,
legend_txt <- c(legend_txt, paste("(I)", plot_name_of_I(cols_sub$guideline)))
legend_col <- c(legend_col, colours_SIR[3])
}
if (any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
if (!is_wt_nwt & any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(R) Resistant")
legend_col <- c(legend_col, colours_SIR[4])
}
if (is_wt_nwt & any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(NWT) Non-wildtype")
legend_col <- c(legend_col, colours_SIR[4])
}
legend("top",
x.intersp = 0.5,
@@ -680,6 +701,8 @@ autoplot.mic <- function(object,
meet_criteria(colours_SIR, allow_class = "character", has_length = c(1, 3, 4))
language <- validate_language(language)
meet_criteria(expand, allow_class = "logical", has_length = 1)
meet_criteria(include_PKPD, allow_class = "logical", has_length = 1)
meet_criteria(breakpoint_type, allow_class = "character", is_in = AMR::clinical_breakpoints$type, has_length = 1)
if ("main" %in% names(list(...))) {
title <- list(...)$main
@@ -690,6 +713,9 @@ autoplot.mic <- function(object,
colours_SIR <- expand_SIR_colours(colours_SIR)
# wildtype/Non-wildtype
is_wt_nwt <- identical(breakpoint_type, "ECOFF")
object <- as.mic(object) # make sure that currently implemented MIC levels are used
x <- plotrange_as_table(object, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
@@ -708,17 +734,21 @@ autoplot.mic <- function(object,
df <- as.data.frame(x, stringsAsFactors = TRUE)
colnames(df) <- c("mic", "count")
df$cols <- cols_sub$cols
df$cols[df$cols == colours_SIR[1]] <- "(S) Susceptible"
df$cols[df$cols == colours_SIR[1] & !is_wt_nwt] <- "(S) Susceptible"
df$cols[df$cols == colours_SIR[1] & is_wt_nwt] <- "(WT) Wildtype"
df$cols[df$cols == colours_SIR[2]] <- "(SDD) Susceptible dose-dependent"
df$cols[df$cols == colours_SIR[3]] <- paste("(I)", plot_name_of_I(cols_sub$guideline))
df$cols[df$cols == colours_SIR[4]] <- "(R) Resistant"
df$cols[df$cols == colours_SIR[4] & !is_wt_nwt] <- "(R) Resistant"
df$cols[df$cols == colours_SIR[4] & is_wt_nwt] <- "(NWT) Non-wildtype"
df$cols <- factor(translate_into_language(df$cols, language = language),
levels = translate_into_language(
c(
"(S) Susceptible",
"(SDD) Susceptible dose-dependent",
paste("(I)", plot_name_of_I(cols_sub$guideline)),
"(R) Resistant"
"(R) Resistant",
"(WT) Wildtype",
"(NWT) Non-wildtype"
),
language = language
),
@@ -733,7 +763,9 @@ autoplot.mic <- function(object,
"(I) Susceptible, incr. exp." = colours_SIR[3],
"(I) Intermediate" = colours_SIR[3],
"(R) Resistant" = colours_SIR[4],
"(NI) Non-interpretable" = "grey30"
"(NI) Non-interpretable" = "grey30",
"(WT) Wildtype" = colours_SIR[1],
"(NWT) Non-wildtype" = colours_SIR[4]
)
names(vals) <- translate_into_language(names(vals), language = language)
p <- p +
@@ -797,10 +829,15 @@ plot.disk <- function(x,
meet_criteria(colours_SIR, allow_class = "character", has_length = c(1, 3, 4))
language <- validate_language(language)
meet_criteria(expand, allow_class = "logical", has_length = 1)
meet_criteria(include_PKPD, allow_class = "logical", has_length = 1)
meet_criteria(breakpoint_type, allow_class = "character", is_in = AMR::clinical_breakpoints$type, has_length = 1)
main <- gsub(" +", " ", paste0(main, collapse = " "))
colours_SIR <- expand_SIR_colours(colours_SIR)
# wildtype/Non-wildtype
is_wt_nwt <- identical(breakpoint_type, "ECOFF")
x <- plotrange_as_table(x, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
@@ -832,10 +869,14 @@ plot.disk <- function(x,
if (any(colours_SIR %in% cols_sub$cols)) {
legend_txt <- character(0)
legend_col <- character(0)
if (any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
if (!is_wt_nwt & any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
legend_txt <- "(R) Resistant"
legend_col <- colours_SIR[4]
}
if (is_wt_nwt & any(cols_sub$cols == colours_SIR[4] & cols_sub$count > 0)) {
legend_txt <- "(NWT) Non-wildtype"
legend_col <- colours_SIR[4]
}
if (any(cols_sub$cols == colours_SIR[3] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, paste("(I)", plot_name_of_I(cols_sub$guideline)))
legend_col <- c(legend_col, colours_SIR[3])
@@ -844,10 +885,14 @@ plot.disk <- function(x,
legend_txt <- c(legend_txt, "(SDD) Susceptible dose-dependent")
legend_col <- c(legend_col, colours_SIR[2])
}
if (any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
if (!is_wt_nwt & any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(S) Susceptible")
legend_col <- c(legend_col, colours_SIR[1])
}
if (is_wt_nwt & any(cols_sub$cols == colours_SIR[1] & cols_sub$count > 0)) {
legend_txt <- c(legend_txt, "(WT) Wildtype")
legend_col <- c(legend_col, colours_SIR[1])
}
legend("top",
x.intersp = 0.5,
legend = translate_into_language(legend_txt, language = language),
@@ -879,6 +924,8 @@ barplot.disk <- function(height,
),
language = get_AMR_locale(),
expand = TRUE,
include_PKPD = getOption("AMR_include_PKPD", TRUE),
breakpoint_type = getOption("AMR_breakpoint_type", "human"),
...) {
meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE)
meet_criteria(ylab, allow_class = "character", has_length = 1)
@@ -889,6 +936,8 @@ barplot.disk <- function(height,
meet_criteria(colours_SIR, allow_class = "character", has_length = c(1, 3, 4))
language <- validate_language(language)
meet_criteria(expand, allow_class = "logical", has_length = 1)
meet_criteria(include_PKPD, allow_class = "logical", has_length = 1)
meet_criteria(breakpoint_type, allow_class = "character", is_in = AMR::clinical_breakpoints$type, has_length = 1)
main <- gsub(" +", " ", paste0(main, collapse = " "))
@@ -901,6 +950,10 @@ barplot.disk <- function(height,
ab = ab,
guideline = guideline,
colours_SIR = colours_SIR,
language = language,
expand = expand,
include_PKPD = include_PKPD,
breakpoint_type = breakpoint_type,
...
)
}
@@ -947,6 +1000,9 @@ autoplot.disk <- function(object,
colours_SIR <- expand_SIR_colours(colours_SIR)
# wildtype/Non-wildtype
is_wt_nwt <- identical(breakpoint_type, "ECOFF")
x <- plotrange_as_table(object, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
@@ -964,23 +1020,26 @@ autoplot.disk <- function(object,
df <- as.data.frame(x, stringsAsFactors = TRUE)
colnames(df) <- c("disk", "count")
df$cols <- cols_sub$cols
df$cols[df$cols == colours_SIR[1]] <- "(S) Susceptible"
df$cols[df$cols == colours_SIR[1] & !is_wt_nwt] <- "(S) Susceptible"
df$cols[df$cols == colours_SIR[1] & is_wt_nwt] <- "(WT) Wildtype"
df$cols[df$cols == colours_SIR[2]] <- "(SDD) Susceptible dose-dependent"
df$cols[df$cols == colours_SIR[3]] <- paste("(I)", plot_name_of_I(cols_sub$guideline))
df$cols[df$cols == colours_SIR[4]] <- "(R) Resistant"
df$cols[df$cols == colours_SIR[4] & !is_wt_nwt] <- "(R) Resistant"
df$cols[df$cols == colours_SIR[4] & is_wt_nwt] <- "(NWT) Non-wildtype"
df$cols <- factor(translate_into_language(df$cols, language = language),
levels = translate_into_language(
c(
"(S) Susceptible",
paste("(I)", plot_name_of_I(cols_sub$guideline)),
"(R) Resistant"
"(R) Resistant",
"(WT) Wildtype",
"(NWT) Non-wildtype"
),
language = language
),
ordered = TRUE
)
p <- ggplot2::ggplot(df)
if (any(colours_SIR %in% cols_sub$cols)) {
vals <- c(
"(S) Susceptible" = colours_SIR[1],
@@ -988,7 +1047,9 @@ autoplot.disk <- function(object,
"(I) Susceptible, incr. exp." = colours_SIR[3],
"(I) Intermediate" = colours_SIR[3],
"(R) Resistant" = colours_SIR[4],
"(NI) Non-interpretable" = "grey30"
"(NI) Non-interpretable" = "grey30",
"(WT) Wildtype" = colours_SIR[1],
"(NWT) Non-wildtype" = colours_SIR[4]
)
names(vals) <- translate_into_language(names(vals), language = language)
p <- p +
@@ -1036,25 +1097,25 @@ plot.sir <- function(x,
data <- as.data.frame(table(x), stringsAsFactors = FALSE)
colnames(data) <- c("x", "n")
data$s <- round((data$n / sum(data$n)) * 100, 1)
data <- data[which(data$n > 0), ]
if (!"S" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "S", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"SDD" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "SDD", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"I" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "I", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"R" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "R", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"NI" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "NI", n = 0, s = 0, stringsAsFactors = FALSE))
if (!all(data$x %in% c("WT", "NWT"), na.rm = TRUE)) {
# # be sure to have at least S, I, and R
if (!"S" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "S", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"I" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "I", n = 0, s = 0, stringsAsFactors = FALSE))
}
if (!"R" %in% data$x) {
data <- rbind_AMR(data, data.frame(x = "R", n = 0, s = 0, stringsAsFactors = FALSE))
}
lvls <- VALID_SIR_LEVELS[VALID_SIR_LEVELS %in% c(data$x, c("S", "I", "R"))]
} else {
lvls <- c("WT", "NWT")
}
data <- data[!(data$n == 0 & data$x %in% c("SDD", "I", "NI")), , drop = FALSE]
data$x <- factor(data$x, levels = intersect(unique(data$x), c("S", "SDD", "I", "R", "NI")), ordered = TRUE)
data$x <- factor(data$x, levels = lvls, ordered = TRUE)
ymax <- pm_if_else(max(data$s) > 95, 105, 100)
@@ -1069,7 +1130,7 @@ plot.sir <- function(x,
axes = FALSE
)
# x axis
axis(side = 1, at = 1:pm_n_distinct(data$x), labels = levels(data$x), lwd = 0)
axis(side = 1, at = seq_along(lvls), labels = lvls, lwd = 0)
# y axis, 0-100%
axis(side = 2, at = seq(0, 100, 5))
@@ -1112,9 +1173,14 @@ barplot.sir <- function(height,
main <- gsub(" +", " ", paste0(main, collapse = " "))
x <- table(height)
# remove missing I, SDD, and N
colours_SIR <- colours_SIR[!(names(x) %in% c("SDD", "I", "NI") & x == 0)]
x <- x[!(names(x) %in% c("SDD", "I", "NI") & x == 0)]
if (all(height %in% c("WT", "NWT"), na.rm = TRUE)) {
colours_SIR <- colours_SIR[c(1, 4)]
x <- x[names(x) %in% c("WT", "NWT")]
} else {
# remove missing I, SDD, and N
colours_SIR <- colours_SIR[!(names(x) %in% c("SDD", "I", "NI") & x == 0)]
x <- x[!(names(x) %in% c("SDD", "I", "NI") & x == 0)]
}
# plot it
barplot(x,
col = colours_SIR,
@@ -1160,6 +1226,11 @@ autoplot.sir <- function(object,
df <- as.data.frame(table(object), stringsAsFactors = TRUE)
colnames(df) <- c("x", "n")
df <- df[!(df$n == 0 & df$x %in% c("SDD", "I", "NI")), , drop = FALSE]
if (all(object %in% c("WT", "NWT"), na.rm = TRUE)) {
df <- df[which(df$x %in% c("WT", "NWT")), ]
} else {
df <- df[which(!df$x %in% c("WT", "NWT", "NS")), ]
}
ggplot2::ggplot(df) +
ggplot2::geom_col(ggplot2::aes(x = x, y = n, fill = x)) +
# limits = force is needed because of a ggplot2 >= 3.3.4 bug (#4511)
@@ -1169,7 +1240,9 @@ autoplot.sir <- function(object,
"SDD" = colours_SIR[2],
"I" = colours_SIR[3],
"R" = colours_SIR[4],
"NI" = "grey30"
"NI" = "grey30",
"WT" = colours_SIR[1],
"NWT" = colours_SIR[4]
),
limits = force
) +
@@ -1298,6 +1371,9 @@ plot_colours_subtitle_guideline <- function(x, mo, ab, guideline, colours_SIR, f
cols[sir == "I"] <- colours_SIR[3]
cols[sir == "R"] <- colours_SIR[4]
cols[sir == "NI"] <- "grey30"
cols[sir == "WT"] <- colours_SIR[1]
cols[sir == "NWT"] <- colours_SIR[4]
cols[sir == "NS"] <- colours_SIR[4]
sub <- bquote(.(abname) ~ "-" ~ italic(.(moname)) ~ .(guideline_txt))
} else {
cols <- "#BEBEBE"

View File

@@ -231,7 +231,7 @@ resistance <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = "R",
ab_result = c("R", "NWT", "NS"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,
@@ -249,7 +249,7 @@ susceptibility <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("S", "SDD", "I"),
ab_result = c("S", "SDD", "I", "WT"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,
@@ -269,7 +269,7 @@ sir_confidence_interval <- function(...,
confidence_level = 0.95,
side = "both",
collapse = FALSE) {
meet_criteria(ab_result, allow_class = c("character", "sir"), has_length = c(1:5), is_in = c("S", "SDD", "I", "R", "NI"))
meet_criteria(ab_result, allow_class = c("character", "sir"), has_length = seq_along(VALID_SIR_LEVELS), is_in = VALID_SIR_LEVELS)
meet_criteria(minimum, allow_class = c("numeric", "integer"), has_length = 1, is_positive_or_zero = TRUE, is_finite = TRUE)
meet_criteria(as_percent, allow_class = "logical", has_length = 1)
meet_criteria(only_all_tested, allow_class = "logical", has_length = 1)
@@ -287,7 +287,7 @@ sir_confidence_interval <- function(...,
)
n <- tryCatch(
sir_calc(...,
ab_result = c("S", "SDD", "I", "R", "NI"),
ab_result = VALID_SIR_LEVELS,
only_all_tested = only_all_tested,
only_count = TRUE
),
@@ -341,7 +341,7 @@ proportion_R <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = "R",
ab_result = c("R", "NWT", "NS"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,
@@ -359,7 +359,7 @@ proportion_IR <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("I", "SDD", "R"),
ab_result = c("I", "SDD", "R", "NWT", "NS"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,
@@ -395,7 +395,7 @@ proportion_SI <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = c("S", "I", "SDD"),
ab_result = c("S", "I", "SDD", "WT"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,
@@ -413,7 +413,7 @@ proportion_S <- function(...,
only_all_tested = FALSE) {
tryCatch(
sir_calc(...,
ab_result = "S",
ab_result = c("S", "WT"),
minimum = minimum,
as_percent = as_percent,
only_all_tested = only_all_tested,

82
R/sir.R
View File

@@ -27,6 +27,8 @@
# how to conduct AMR data analysis: https://amr-for-r.org #
# ==================================================================== #
VALID_SIR_LEVELS <- c("S", "SDD", "I", "R", "NI", "WT", "NWT", "NS")
#' Interpret MIC and Disk Diffusion as SIR, or Clean Existing SIR Data
#'
#' @description Clean up existing SIR values, or interpret minimum inhibitory concentration (MIC) values and disk diffusion diameters according to EUCAST or CLSI. [as.sir()] transforms the input to a new class [`sir`], which is an ordered [factor] containing the levels `S`, `SDD`, `I`, `R`, `NI`.
@@ -58,6 +60,7 @@
#' * `>=` and `>` always return `"R"`, regardless of the breakpoint.
#'
#' The default `"conservative"` setting ensures cautious handling of uncertain values while preserving interpretability. This option can also be set with the package option [`AMR_capped_mic_handling`][AMR-options].
#' @param as_wt_nwt A [logical] to return `"WT"`/`"NWT"` instead of `"S"`/`"R"`. Defaults to `TRUE` when using ECOFFs, i.e., when `breakpoint_type` is set to `"ECOFF"`.
#' @param add_intrinsic_resistance *(only useful when using a EUCAST guideline)* a [logical] to indicate whether intrinsic antibiotic resistance must also be considered for applicable bug-drug combinations, meaning that e.g. ampicillin will always return "R" in *Klebsiella* species. Determination is based on the [intrinsic_resistant] data set, that itself is based on `r format_eucast_version_nr(3.3)`.
#' @param substitute_missing_r_breakpoint A [logical] to indicate that a missing clinical breakpoints for R (resistant) must be substituted with R - the default is `FALSE`. Some (especially CLSI) breakpoints only have a breakpoint for S, meaning that the outcome can only be `"S"` or `NA`. Setting this to `TRUE` will convert the `NA`s in these cases to `"R"`. Can also be set with the package option [`AMR_substitute_missing_r_breakpoint`][AMR-options].
#' @param include_screening A [logical] to indicate that clinical breakpoints for screening are allowed - the default is `FALSE`. Can also be set with the package option [`AMR_include_screening`][AMR-options].
@@ -165,7 +168,7 @@
#'
#' The function [is_sir_eligible()] returns `TRUE` when a column contains at most 5% potentially invalid antimicrobial interpretations, and `FALSE` otherwise. The threshold of 5% can be set with the `threshold` argument. If the input is a [data.frame], it iterates over all columns and returns a [logical] vector.
#' @section Interpretation of SIR:
#' In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (<https://www.eucast.org/newsiandr>).
#' In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (<https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/>).
#'
#' This AMR package follows insight; use [susceptibility()] (equal to [proportion_SI()]) to determine antimicrobial susceptibility and [count_susceptible()] (equal to [count_SI()]) to count susceptible isolates.
#' @return Ordered [factor] with new class `sir`
@@ -179,7 +182,7 @@
#' - **CLSI M100: Performance Standard for Antimicrobial Susceptibility Testing**, `r min(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type != "animal")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type != "animal")$guideline)))`, *Clinical and Laboratory Standards Institute* (CLSI). <https://clsi.org/standards/products/microbiology/documents/m100/>.
#' - **CLSI VET01: Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals**, `r min(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type == "animal")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type == "animal")$guideline)))`, *Clinical and Laboratory Standards Institute* (CLSI). <https://clsi.org/standards/products/veterinary-medicine/documents/vet01/>.
###### TODO - **CLSI VET09: Understanding Susceptibility Test Data as a Component of Antimicrobial Stewardship in Veterinary Settings**, `r min(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type == "animal")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "CLSI" & type == "animal")$guideline)))`, *Clinical and Laboratory Standards Institute* (CLSI). <https://clsi.org/standards/products/veterinary-medicine/documents/vet09/>.
#' - **EUCAST Breakpoint tables for interpretation of MICs and zone diameters**, `r min(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`, *European Committee on Antimicrobial Susceptibility Testing* (EUCAST). <https://www.eucast.org/clinical_breakpoints>.
#' - **EUCAST Breakpoint tables for interpretation of MICs and zone diameters**, `r min(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(AMR::clinical_breakpoints, guideline %like% "EUCAST")$guideline)))`, *European Committee on Antimicrobial Susceptibility Testing* (EUCAST). <https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/>.
#' - **WHONET** as a source for machine-reading the clinical breakpoints ([read more here](https://amr-for-r.org/reference/clinical_breakpoints.html#imported-from-whonet)), 1989-`r max(as.integer(gsub("[^0-9]", "", AMR::clinical_breakpoints$guideline)))`, *WHO Collaborating Centre for Surveillance of Antimicrobial Resistance*. <https://whonet.org/>.
#'
#' @inheritSection AMR Download Our Reference Data
@@ -398,7 +401,7 @@ as_sir_structure <- function(x,
ref_breakpoints = NULL) {
structure(
factor(as.character(unlist(unname(x))),
levels = c("S", "SDD", "I", "R", "NI"),
levels = VALID_SIR_LEVELS,
ordered = TRUE
),
# TODO for #170
@@ -454,9 +457,9 @@ is_sir_eligible <- function(x, threshold = 0.05) {
%in% class(x))) {
# no transformation needed
return(FALSE)
} else if (!all(is.na(x)) && all(x %in% c("S", "SDD", "I", "R", "NI", NA, "s", "sdd", "i", "r", "ni"))) {
} else if (!all(is.na(x)) && all(x %in% c(VALID_SIR_LEVELS, tolower(VALID_SIR_LEVELS), NA))) {
return(TRUE)
} else if (!all(is.na(x)) && !any(c("S", "SDD", "I", "R", "NI") %in% gsub("([SIR])\\1+", "\\1", gsub("[^A-Z]", "", toupper(unique(x[1:10000])), perl = TRUE), perl = TRUE), na.rm = TRUE)) {
} else if (!all(is.na(x)) && !any(VALID_SIR_LEVELS %in% gsub("([SIR])\\1+", "\\1", gsub("[^A-Z]", "", toupper(unique(x[1:10000])), perl = TRUE), perl = TRUE), na.rm = TRUE)) {
return(FALSE)
} else {
x <- x[!is.na(x) & !is.null(x) & !x %in% c("", "-", "NULL")]
@@ -486,7 +489,7 @@ is_sir_eligible <- function(x, threshold = 0.05) {
#' @rdname as.sir
#' @export
#' @param S,I,R,NI,SDD A case-independent [regular expression][base::regex] to translate input to this result. This regular expression will be run *after* all non-letters and whitespaces are removed from the input.
#' @param S,I,R,NI,SDD,WT,NWT,NS A case-independent [regular expression][base::regex] to translate input to this result. This regular expression will be run *after* all non-letters and whitespaces are removed from the input.
#' @param info A [logical] to print information about the process, defaults to `TRUE` only in [interactive sessions][base::interactive()].
# extra param: warn (logical, to never throw a warning)
as.sir.default <- function(x,
@@ -495,13 +498,19 @@ as.sir.default <- function(x,
R = "^(R|3)+$",
NI = "^(N|NI|V|4)+$",
SDD = "^(SDD|D|H|5)+$",
WT = "^(WT|6)+$",
NWT = "^(NWT|7)+$",
NS = "^(NS|8)+$",
info = interactive(),
...) {
meet_criteria(S, allow_class = c("character", "numeric", "integer"), has_length = 1)
meet_criteria(I, allow_class = c("character", "numeric", "integer"), has_length = 1)
meet_criteria(R, allow_class = c("character", "numeric", "integer"), has_length = 1)
meet_criteria(NI, allow_class = c("character", "numeric", "integer"), has_length = 1)
meet_criteria(SDD, allow_class = c("character", "numeric", "integer"), has_length = 1)
meet_criteria(S, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(I, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(R, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(NI, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(SDD, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(WT, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(NWT, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(NS, allow_class = c("character", "numeric", "integer", "factor"), has_length = 1)
meet_criteria(info, allow_class = "logical", has_length = 1)
if (inherits(x, "sir")) {
return(as_sir_structure(x))
@@ -516,7 +525,7 @@ as.sir.default <- function(x,
x[x.bak == 1] <- names(lbls[lbls == 1])
x[x.bak == 2] <- names(lbls[lbls == 2])
x[x.bak == 3] <- names(lbls[lbls == 3])
} else if (!all(is.na(x)) && !identical(levels(x), c("S", "SDD", "I", "R", "NI")) && !all(x %in% c("S", "SDD", "I", "R", "NI", NA))) {
} else if (!all(is.na(x)) && !identical(levels(x), VALID_SIR_LEVELS) && !all(x %in% c(VALID_SIR_LEVELS, NA))) {
if (all(x %unlike% "(S|I|R)", na.rm = TRUE) && !all(x %in% c(1, 2, 3, 4, 5), na.rm = TRUE)) {
# check if they are actually MICs or disks
if (all_valid_mics(x)) {
@@ -557,7 +566,7 @@ as.sir.default <- function(x,
x[x %like% "not|non"] <- "NI"
x[x %like% "([^a-z]|^)int(er(mediate)?)?|incr.*exp"] <- "I"
x[x %like% "dose"] <- "SDD"
mtch <- grepl(paste0("(", S, "|", I, "|", R, "|", NI, "|", SDD, "|[A-Z]+)"), x, perl = TRUE)
mtch <- grepl(paste0("(", S, "|", I, "|", R, "|", NI, "|", SDD, "|", WT, "|", NWT, "|", NS, "|[A-Z]+)"), x, perl = TRUE)
x[!mtch] <- ""
# apply regexes set by user
x[x %like% S] <- "S"
@@ -565,22 +574,31 @@ as.sir.default <- function(x,
x[x %like% R] <- "R"
x[x %like% NI] <- "NI"
x[x %like% SDD] <- "SDD"
x[!x %in% c("S", "SDD", "I", "R", "NI")] <- NA_character_
x[x %like% WT] <- "WT"
x[x %like% NWT] <- "NWT"
x[x %like% NS] <- "NS"
x[!x %in% VALID_SIR_LEVELS] <- NA_character_
na_after <- length(x[is.na(x) | x == ""])
if (!isFALSE(list(...)$warn)) { # so as.sir(..., warn = FALSE) will never throw a warning
if (all(x.bak %in% c(1, 2, 3, 4, 5), na.rm = TRUE) && message_not_thrown_before("as.sir", "numeric_interpretation", x, x.bak)) {
if (all(x.bak %in% c(1:8), na.rm = TRUE) && message_not_thrown_before("as.sir", "numeric_interpretation", x, x.bak)) {
out1 <- unique(x[x.bak == 1])
out2 <- unique(x[x.bak == 2])
out3 <- unique(x[x.bak == 3])
out4 <- unique(x[x.bak == 4])
out5 <- unique(x[x.bak == 5])
out6 <- unique(x[x.bak == 6])
out7 <- unique(x[x.bak == 7])
out8 <- unique(x[x.bak == 8])
out <- c(
ifelse(length(out1) > 0, paste0("1 as \"", out1, "\""), NA_character_),
ifelse(length(out2) > 0, paste0("2 as \"", out2, "\""), NA_character_),
ifelse(length(out3) > 0, paste0("3 as \"", out3, "\""), NA_character_),
ifelse(length(out4) > 0, paste0("4 as \"", out4, "\""), NA_character_),
ifelse(length(out5) > 0, paste0("5 as \"", out5, "\""), NA_character_)
ifelse(length(out5) > 0, paste0("5 as \"", out5, "\""), NA_character_),
ifelse(length(out6) > 0, paste0("6 as \"", out6, "\""), NA_character_),
ifelse(length(out7) > 0, paste0("7 as \"", out7, "\""), NA_character_),
ifelse(length(out8) > 0, paste0("8 as \"", out8, "\""), NA_character_)
)
message_("in `as.sir()`: Interpreting input value ", vector_and(out[!is.na(out)], quotes = FALSE, sort = FALSE))
}
@@ -593,7 +611,7 @@ as.sir.default <- function(x,
cur_col <- get_current_column()
warning_("in `as.sir()`: ", na_after - na_before, " result",
ifelse(na_after - na_before > 1, "s", ""),
ifelse(is.null(cur_col), "", paste0(" in index '", cur_col, "'")),
ifelse(is.null(cur_col), "", paste0(" in column '", cur_col, "'")),
" truncated (",
round(((na_after - na_before) / length(x)) * 100),
"%) that were invalid antimicrobial interpretations: ",
@@ -615,6 +633,7 @@ as.sir.mic <- function(x,
guideline = getOption("AMR_guideline", "EUCAST"),
uti = NULL,
capped_mic_handling = getOption("AMR_capped_mic_handling", "standard"),
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint", FALSE),
@@ -636,6 +655,7 @@ as.sir.mic <- function(x,
guideline = guideline,
uti = uti,
capped_mic_handling = capped_mic_handling,
as_wt_nwt = as_wt_nwt,
add_intrinsic_resistance = add_intrinsic_resistance,
reference_data = reference_data,
substitute_missing_r_breakpoint = substitute_missing_r_breakpoint,
@@ -658,6 +678,7 @@ as.sir.disk <- function(x,
ab = deparse(substitute(x)),
guideline = getOption("AMR_guideline", "EUCAST"),
uti = NULL,
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint", FALSE),
@@ -678,6 +699,7 @@ as.sir.disk <- function(x,
guideline = guideline,
uti = uti,
capped_mic_handling = "standard", # will be ignored for non-MIC anyway
as_wt_nwt = as_wt_nwt,
add_intrinsic_resistance = add_intrinsic_resistance,
reference_data = reference_data,
substitute_missing_r_breakpoint = substitute_missing_r_breakpoint,
@@ -702,6 +724,7 @@ as.sir.data.frame <- function(x,
guideline = getOption("AMR_guideline", "EUCAST"),
uti = NULL,
capped_mic_handling = getOption("AMR_capped_mic_handling", "standard"),
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint", FALSE),
@@ -720,6 +743,7 @@ as.sir.data.frame <- function(x,
meet_criteria(guideline, allow_class = "character")
meet_criteria(uti, allow_class = c("logical", "character"), allow_NULL = TRUE, allow_NA = TRUE)
meet_criteria(capped_mic_handling, allow_class = "character", has_length = 1, is_in = c("none", "conservative", "standard", "lenient"))
meet_criteria(as_wt_nwt, allow_class = "logical", has_length = 1)
meet_criteria(add_intrinsic_resistance, allow_class = "logical", has_length = 1)
meet_criteria(reference_data, allow_class = "data.frame")
meet_criteria(substitute_missing_r_breakpoint, allow_class = "logical", has_length = 1)
@@ -899,6 +923,7 @@ as.sir.data.frame <- function(x,
guideline = guideline,
uti = uti,
capped_mic_handling = capped_mic_handling,
as_wt_nwt = as_wt_nwt,
add_intrinsic_resistance = add_intrinsic_resistance,
reference_data = reference_data,
substitute_missing_r_breakpoint = substitute_missing_r_breakpoint,
@@ -926,6 +951,7 @@ as.sir.data.frame <- function(x,
ab = ab_col,
guideline = guideline,
uti = uti,
as_wt_nwt = as_wt_nwt,
add_intrinsic_resistance = add_intrinsic_resistance,
reference_data = reference_data,
substitute_missing_r_breakpoint = substitute_missing_r_breakpoint,
@@ -988,7 +1014,7 @@ as.sir.data.frame <- function(x,
on.exit(parallel::stopCluster(cl), add = TRUE)
parallel::clusterExport(cl, varlist = c(
"x", "x.bak", "x_mo", "ab_cols", "types",
"capped_mic_handling", "add_intrinsic_resistance",
"capped_mic_handling", "as_wt_nwt", "add_intrinsic_resistance",
"reference_data", "substitute_missing_r_breakpoint", "include_screening", "include_PKPD",
"breakpoint_type", "guideline", "host", "uti", "info", "verbose",
"col_mo", "AMR_env", "conserve_capped_values",
@@ -1101,6 +1127,7 @@ as_sir_method <- function(method_short,
guideline,
uti,
capped_mic_handling,
as_wt_nwt,
add_intrinsic_resistance,
reference_data,
substitute_missing_r_breakpoint,
@@ -1123,6 +1150,7 @@ as_sir_method <- function(method_short,
meet_criteria(guideline, allow_class = "character", has_length = c(1, length(x)), .call_depth = -2)
meet_criteria(uti, allow_class = c("logical", "character"), has_length = c(1, length(x)), allow_NULL = TRUE, allow_NA = TRUE, .call_depth = -2)
meet_criteria(capped_mic_handling, allow_class = "character", has_length = 1, is_in = c("none", "conservative", "standard", "lenient"), .call_depth = -2)
meet_criteria(as_wt_nwt, allow_class = "logical", has_length = 1, .call_depth = -2)
meet_criteria(add_intrinsic_resistance, allow_class = "logical", has_length = 1, .call_depth = -2)
meet_criteria(reference_data, allow_class = "data.frame", .call_depth = -2)
meet_criteria(substitute_missing_r_breakpoint, allow_class = "logical", has_length = 1, .call_depth = -2)
@@ -1409,8 +1437,7 @@ as_sir_method <- function(method_short,
if (is.na(mic_val)) {
return(NA_real_)
} else {
# find the smallest log2 level that is >= mic_val
log2_val <- log2_levels[which(log2_levels >= as.double(mic_val))][1]
log2_val <- COMMON_MIC_VALUES[which(COMMON_MIC_VALUES >= as.double(mic_val))][1]
if (!is.na(log2_val) && as.double(mic_val) != log2_val) {
if (message_not_thrown_before("as.sir", "CLSI", "MICupscaling")) {
warning_("Some MICs were converted to the nearest higher log2 level, following the CLSI interpretation guideline.")
@@ -1863,6 +1890,12 @@ as_sir_method <- function(method_short,
)
}
# rewrite S/R to WT/NWT if needed
if (isTRUE(as_wt_nwt)) {
new_sir[new_sir == "S"] <- "WT"
new_sir[new_sir == "R"] <- "NWT"
}
# write to verbose output
notes_current <- gsub("\n\n", "\n", trimws2(notes_current), fixed = TRUE)
notes_current[notes_current == ""] <- NA_character_
@@ -1977,6 +2010,9 @@ pillar_shaft.sir <- function(x, ...) {
out[x == "I"] <- font_orange_bg(" I ")
out[x == "R"] <- font_rose_bg(" R ")
out[x == "NI"] <- font_grey_bg(font_black(" NI "))
out[x == "WT"] <- font_green_bg(font_black(" WT "))
out[x == "NWT"] <- font_rose_bg(font_black(" NWT "))
out[x == "NS"] <- font_rose_bg(font_black(" NS "))
}
create_pillar_column(out, align = "left", width = 5)
}
@@ -2073,9 +2109,9 @@ print.sir <- function(x, ...) {
#' @export
as.double.sir <- function(x, ...) {
dbls <- rep(NA_real_, length(x))
dbls[x == "S"] <- 1
dbls[x %in% c("SDD", "I")] <- 2
dbls[x == "R"] <- 3
dbls[x %in% c("S", "WT")] <- 1
dbls[x %in% c("I", "SDD")] <- 2
dbls[x %in% c("R", "NWT", "NS")] <- 3
dbls
}

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@@ -41,7 +41,7 @@ sir_calc <- function(...,
as_percent = FALSE,
only_all_tested = FALSE,
only_count = FALSE) {
meet_criteria(ab_result, allow_class = c("character", "numeric", "integer"), has_length = c(1:5))
meet_criteria(ab_result, allow_class = c("character", "sir"), has_length = seq_along(VALID_SIR_LEVELS), is_in = VALID_SIR_LEVELS)
meet_criteria(minimum, allow_class = c("numeric", "integer"), has_length = 1, is_positive_or_zero = TRUE, is_finite = TRUE)
meet_criteria(as_percent, allow_class = "logical", has_length = 1)
meet_criteria(only_all_tested, allow_class = "logical", has_length = 1)
@@ -117,6 +117,8 @@ sir_calc <- function(...,
print_warning <- FALSE
ab_result <- as.sir(ab_result)
denominator_vals <- levels(ab_result)
denominator_vals <- denominator_vals[denominator_vals != "NI"]
if (is.data.frame(x)) {
sir_integrity_check <- character(0)
@@ -148,7 +150,7 @@ sir_calc <- function(...,
denominator <- sum(vapply(FUN.VALUE = logical(1), x_transposed, function(y) !(anyNA(y))))
} else {
# may contain NAs in any column
other_values <- setdiff(c(NA, levels(ab_result)), ab_result)
other_values <- setdiff(c(NA, denominator_vals), ab_result)
if ("SDD" %in% ab_result && "SDD" %in% unlist(x_transposed) && message_not_thrown_before("sir_calc", only_count, ab_result, entire_session = TRUE)) {
message_("Note that `", ifelse(only_count, "count", "proportion"), "_", ifelse("S" %in% ab_result, "S", ""), "I", ifelse("R" %in% ab_result, "R", ""), "()` will also include dose-dependent susceptibility, 'SDD'. This note will be shown once for this session.", as_note = FALSE)
}
@@ -165,7 +167,7 @@ sir_calc <- function(...,
message_("Note that `", ifelse(only_count, "count", "proportion"), "_", ifelse("S" %in% ab_result, "S", ""), "I", ifelse("R" %in% ab_result, "R", ""), "()` will also include dose-dependent susceptibility, 'SDD'. This note will be shown once for this session.", as_note = FALSE)
}
numerator <- sum(x %in% ab_result, na.rm = TRUE)
denominator <- sum(x %in% levels(ab_result), na.rm = TRUE)
denominator <- sum(x %in% denominator_vals, na.rm = TRUE)
}
if (print_warning == TRUE) {
@@ -259,13 +261,13 @@ sir_calc_df <- function(type, # "proportion", "count" or "both"
for (i in seq_len(ncol(data))) {
# transform SIR columns
if (is.sir(data[, i, drop = TRUE])) {
data[, i] <- as.character(data[, i, drop = TRUE])
data[, i] <- as.character(as.sir(data[, i, drop = TRUE]))
data[which(data[, i, drop = TRUE] %in% c("S", "SDD", "WT")), i] <- "S"
data[which(data[, i, drop = TRUE] %in% c("R", "NWT", "NS")), i] <- "R"
if (isTRUE(combine_SI)) {
if ("SDD" %in% data[, i, drop = TRUE] && message_not_thrown_before("sir_calc_df", combine_SI, entire_session = TRUE)) {
message_("Note that `sir_calc_df()` will also count dose-dependent susceptibility, 'SDD', as 'SI' when `combine_SI = TRUE`. This note will be shown once for this session.", as_note = FALSE)
}
data[, i] <- gsub("(I|S|SDD)", "SI", data[, i, drop = TRUE])
data[which(data[, i, drop = TRUE] %in% c("I", "S")), i] <- "SI"
}
data[which(!data[, i, drop = TRUE] %in% c("S", "SI", "I", "R")), i] <- NA_character_
}
}

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@@ -263,19 +263,27 @@ translate_into_language <- function(from,
df_trans$pattern[df_trans$regular_expr == TRUE] <- gsub("$$", "$", df_trans$pattern[df_trans$regular_expr == TRUE], fixed = TRUE)
}
lapply(
# starting with longest pattern, since more general translations are shorter, such as 'Group'
order(nchar(df_trans$pattern), decreasing = TRUE),
function(i) {
from_unique_translated <<- gsub(
pattern = df_trans$pattern[i],
replacement = df_trans[i, lang, drop = TRUE],
x = from_unique_translated,
ignore.case = !df_trans$case_sensitive[i] & df_trans$regular_expr[i],
fixed = !df_trans$regular_expr[i],
perl = df_trans$regular_expr[i]
# non-regex part
translate_exec <- function(term) {
# sort trans file on length of pattern
trns <- df_trans[order(nchar(df_trans$pattern), decreasing = TRUE), ]
for (i in seq_len(nrow(trns))) {
term <- gsub(
pattern = trns$pattern[i],
replacement = trns[i, lang, drop = TRUE],
x = term,
ignore.case = !trns$case_sensitive[i] & trns$regular_expr[i],
fixed = !trns$regular_expr[i],
perl = trns$regular_expr[i],
)
}
term
}
from_unique_translated[order(nchar(from_unique_translated), decreasing = TRUE)] <- vapply(
FUN.VALUE = character(1),
USE.NAMES = FALSE,
from_unique_translated[order(nchar(from_unique_translated), decreasing = TRUE)],
translate_exec
)
# force UTF-8 for diacritics

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@@ -368,7 +368,7 @@ pre_commit_lst$MO_RELEVANT_GENERA <- c(
pre_commit_lst$AB_AMINOGLYCOSIDES <- antimicrobials %>%
filter(group %like% "aminoglycoside") %>%
pull(ab)
pre_commit_lst$AB_AMINOPENICILLINS <- as.ab(c("AMP", "AMX"))
pre_commit_lst$AB_AMINOPENICILLINS <- as.ab(c("AMP", "AMX", "AMC"))
pre_commit_lst$AB_ANTIFUNGALS <- antimicrobials %>%
filter(group %like% "antifungal") %>%
pull(ab)
@@ -397,10 +397,6 @@ pre_commit_lst$AB_CEPHALOSPORINS_5TH <- antimicrobials %>%
filter(group %like% "cephalosporin.*5") %>%
pull(ab)
pre_commit_lst$AB_CEPHALOSPORINS_EXCEPT_CAZ <- pre_commit_lst$AB_CEPHALOSPORINS[pre_commit_lst$AB_CEPHALOSPORINS != "CAZ"]
pre_commit_lst$AB_FLUOROQUINOLONES <- antimicrobials %>%
# see DOI 10.23937/2378-3656/1410369, more specifically this table: https://www.clinmedjournals.org/articles/cmrcr/cmrcr-8-369-table1.html
filter((group %like% "quinolone" | atc_group1 %like% "quinolone" | atc_group2 %like% "quinolone") & name %unlike% " acid|nalidixic|cinoxacin|flumequine|oxolinic|piromidic|pipemidic|rosoxacin") %>%
pull(ab)
pre_commit_lst$AB_GLYCOPEPTIDES <- antimicrobials %>%
filter(group %like% "glycopeptide") %>%
pull(ab)
@@ -410,10 +406,10 @@ pre_commit_lst$AB_ISOXAZOLYLPENICILLINS <- antimicrobials %>%
pre_commit_lst$AB_LIPOGLYCOPEPTIDES <- as.ab(c("DAL", "ORI", "TLV")) # dalba/orita/tela
pre_commit_lst$AB_GLYCOPEPTIDES_EXCEPT_LIPO <- pre_commit_lst$AB_GLYCOPEPTIDES[!pre_commit_lst$AB_GLYCOPEPTIDES %in% pre_commit_lst$AB_LIPOGLYCOPEPTIDES]
pre_commit_lst$AB_LINCOSAMIDES <- antimicrobials %>%
filter(atc_group2 %like% "lincosamide" | (group %like% "lincosamide" & is.na(atc_group2) & name %like% "^(pirlimycin)" & name %unlike% "screening|inducible")) %>%
filter(atc_group2 %like% "lincosamide" | (group %like% "lincosamide" & is.na(atc_group2) & name %like% "^(pirlimycin|clinda)")) %>%
pull(ab)
pre_commit_lst$AB_MACROLIDES <- antimicrobials %>%
filter(atc_group2 %like% "macrolide" | (group %like% "macrolide" & is.na(atc_group2) & name %like% "^(acetylmidecamycin|acetylspiramycin|gamith?romycin|kitasamycin|meleumycin|nafith?romycin|solith?romycin|tildipirosin|tilmicosin|tulath?romycin|tylosin|tylvalosin)" & name %unlike% "screening|inducible")) %>%
filter(atc_group2 %like% "macrolide" | (group %like% "macrolide" & is.na(atc_group2)) | name %like% "^(acetylmidecamycin|acetylspiramycin|gamith?romycin|kitasamycin|meleumycin|nafith?romycin|primycin|solith?romycin|tildipirosin|tilmicosin|tulath?romycin|tylosin|tylvalosin)") %>%
pull(ab)
pre_commit_lst$AB_MONOBACTAMS <- antimicrobials %>%
filter(group %like% "monobactam") %>%
@@ -430,36 +426,131 @@ pre_commit_lst$AB_PENICILLINS <- antimicrobials %>%
pre_commit_lst$AB_PHENICOLS <- antimicrobials %>%
filter(group %like% "phenicol" | atc_group1 %like% "phenicol" | atc_group2 %like% "phenicol") %>%
pull(ab)
pre_commit_lst$AB_PHOSPHONICS <- antimicrobials %>%
filter(group %like% "phosphonic" | name %like% "fosfo") %>%
pull(ab)
pre_commit_lst$AB_POLYMYXINS <- antimicrobials %>%
filter(group %like% "polymyxin") %>%
pull(ab)
pre_commit_lst$AB_QUINOLONES <- antimicrobials %>%
filter(group %like% "quinolone" | atc_group1 %like% "quinolone" | atc_group2 %like% "quinolone") %>%
filter(group %like% "quinolone" | atc_group1 %like% "quinolone" | atc_group2 %like% "quinolone" | name %like% "ozenoxacin") %>%
pull(ab)
pre_commit_lst$AB_FLUOROQUINOLONES <- antimicrobials %>%
# see DOI 10.23937/2378-3656/1410369, more specifically this table: https://www.clinmedjournals.org/articles/cmrcr/cmrcr-8-369-table1.html
filter(ab %in% pre_commit_lst$AB_QUINOLONES & name %unlike% " acid|nalidixic|cinoxacin|flumequine|oxolinic|ozenoxacin|piromidic|pipemidic|rosoxacin") %>%
pull(ab)
pre_commit_lst$AB_RIFAMYCINS <- antimicrobials %>%
filter(name %like% "Rifampi|Rifabutin|Rifapentine|rifamy") %>%
pull(ab)
pre_commit_lst$AB_SPIROPYRIMIDINETRIONES <- antimicrobials %>%
filter(name %like% "zoliflodacin") %>%
pull(ab)
pre_commit_lst$AB_STREPTOGRAMINS <- antimicrobials %>%
filter(atc_group2 %like% "streptogramin") %>%
pull(ab)
pre_commit_lst$AB_TETRACYCLINES <- antimicrobials %>%
filter(group %like% "tetracycline") %>%
filter(atc_group1 %like% "tetracycline" | atc_group2 %like% "tetracycline" | name %like% "chlortetracycline|cetocycline|demeclocycline|doxycycline|eravacycline|lymecycline|meclocycline|meth?acycline|minocycline|omadacycline|oxytetracycline|rolitetracycline|sarecycline|tetracycline|tigecycline") %>%
pull(ab)
pre_commit_lst$AB_TETRACYCLINES_EXCEPT_TGC <- pre_commit_lst$AB_TETRACYCLINES[pre_commit_lst$AB_TETRACYCLINES != "TGC"]
pre_commit_lst$AB_TRIMETHOPRIMS <- antimicrobials %>%
filter(group %like% "trimethoprim") %>%
filter(atc_group1 %like% "trimethoprim" | atc_group2 %like% "trimethoprim" | name %like% "trimethoprim|ormetroprim|iclaprim") %>%
pull(ab)
pre_commit_lst$AB_SULFONAMIDES <- antimicrobials %>%
filter(group %like% "trimethoprim" & name %unlike% "trimethoprim") %>%
filter(name %like% "(^|/)sulf[oai]") %>%
pull(ab)
pre_commit_lst$AB_UREIDOPENICILLINS <- as.ab(c("PIP", "TZP", "AZL", "MEZ"))
pre_commit_lst$AB_BETALACTAMS <- sort(c(pre_commit_lst$AB_PENICILLINS, pre_commit_lst$AB_CEPHALOSPORINS, pre_commit_lst$AB_CARBAPENEMS, pre_commit_lst$AB_MONOBACTAMS))
pre_commit_lst$AB_BETALACTAMS <- sort(c(
pre_commit_lst$AB_PENICILLINS,
pre_commit_lst$AB_CEPHALOSPORINS,
pre_commit_lst$AB_CARBAPENEMS,
pre_commit_lst$AB_MONOBACTAMS))
pre_commit_lst$AB_BETALACTAMASE_INHIBITORS <- antimicrobials %>%
filter(atc_group2 %like% "Beta-lactamase inhibitors" | name %like% "bactam") %>%
pull(ab)
# for EUCAST:
pre_commit_lst$AB_BETALACTAMS_WITH_INHIBITOR <- antimicrobials %>%
filter(name %like% "/" & name %unlike% "EDTA" & ab %in% pre_commit_lst$AB_BETALACTAMS) %>%
filter(ab %in% pre_commit_lst$AB_BETALACTAMS & name %like% "/" & name %unlike% "EDTA") %>%
pull(ab)
# this will be used for documentation:
pre_commit_lst$DEFINED_AB_GROUPS <- sort(names(pre_commit_lst)[names(pre_commit_lst) %like% "^AB_" & names(pre_commit_lst) != "AB_LOOKUP"])
# Update the antimicrobials$group column
usethis::ui_info("Updating 'group' column in antimicrobials data set from AB_* vectors")
prettify_group_name <- function(name) {
raw <- gsub("^AB_", "", name)
pretty <- tools::toTitleCase(gsub("_", " ", tolower(raw)))
pretty[pretty %like% " (except|with) "] <- ""
pretty <- gsub(" (1st|2nd|3rd|4th|5th|6th)", " (\\1 gen.)", pretty)
pretty <- gsub("([Bb])eta[-]?", "\\1eta-", pretty)
pretty <- gsub(" Inhibitor", " inhibitor", pretty)
pretty <- pretty[pretty != ""]
return(pretty)
}
group_map <- vector("list", length = nrow(antimicrobials))
names(group_map) <- antimicrobials$ab
for (group_name in pre_commit_lst$DEFINED_AB_GROUPS) {
ab_vector <- pre_commit_lst[[group_name]]
pretty_name <- prettify_group_name(group_name)
for (ab in ab_vector) {
ab_chr <- as.character(ab)
group_map[[ab_chr]] <- sort(unique(c(group_map[[ab_chr]], pretty_name)))
}
}
for (i in seq_along(group_map)) {
if (is.null(group_map[[i]])) {
group_map[[i]] <- "Other"
if (antimicrobials$group[i] %unlike% "other") {
usethis::ui_warn("AB had a group but not anymore: ", antimicrobials$name[i], " (", antimicrobials$ab[i], "), was ", toString(antimicrobials$group[i]))
}
}
group_map[[i]] <- group_map[[i]][order(nchar(group_map[[i]]))]
}
# create priority list for ab_group()
pre_commit_lst$ABX_PRIORITY_LIST <- c("Aminopenicillins",
"Isoxazolylpenicillins",
"Ureidopenicillins",
"Oxazolidinones",
"Carbapenems",
"Cephalosporins (1st gen.)",
"Cephalosporins (2nd gen.)",
"Cephalosporins (3rd gen.)",
"Cephalosporins (4th gen.)",
"Cephalosporins (5th gen.)",
"Cephalosporins",
"Penicillins",
"Monobactams",
"Aminoglycosides",
"Lipoglycopeptides",
"Glycopeptides",
"Lincosamides",
"Streptogramins",
"Macrolides",
"Nitrofurans",
"Phenicols",
"Phosphonics",
"Polymyxins",
"Fluoroquinolones",
"Quinolones",
"Rifamycins",
"Spiropyrimidinetriones",
"Trimethoprims",
"Sulfonamides",
"Tetracyclines",
"Antifungals",
"Antimycobacterials",
"Beta-lactams",
"Beta-lactamase inhibitors",
"Other")
if (!all(unlist(antimicrobials$group) %in% pre_commit_lst$ABX_PRIORITY_LIST)) {
stop("Missing group(s) in priority list: ", paste(setdiff(unlist(antimicrobials$group), pre_commit_lst$ABX_PRIORITY_LIST), collapse = ", "))
}
for (i in seq_along(group_map)) {
group_map[[i]] <- intersect(pre_commit_lst$ABX_PRIORITY_LIST, group_map[[i]])
}
antimicrobials$group <- unname(group_map)
usethis::use_data(antimicrobials, overwrite = TRUE, version = 2, compress = "xz")
pre_commit_lst$AB_LOOKUP <- create_AB_AV_lookup(antimicrobials)
pre_commit_lst$AV_LOOKUP <- create_AB_AV_lookup(antivirals)
@@ -646,7 +737,33 @@ files_changed <- function(paths = "^(R|data)/") {
# Update URLs -------------------------------------------------------------
if (files_changed()) {
usethis::ui_info("Checking URLs for redirects")
invisible(urlchecker::url_update("."))
# Step 1: Get sources from tools (excluding man/)
sources <- tools:::url_db_from_package_sources(".")
sources <- sources[!grepl("^man/", sources$Parent), ]
# Step 2: Get URLs from .R files in R/
r_files <- list.files("R", pattern = "\\.R$", full.names = TRUE)
# Function to extract URLs from a file
extract_urls_from_file <- function(file_path) {
lines <- readLines(file_path, warn = FALSE)
urls <- stringr::str_extract_all(lines, "https?://[^\\s)\"'>]+")
urls <- unlist(urls)
if (length(urls) == 0) {
return(NULL)
}
# Remove trailing punctuation (e.g., .,), etc.)
urls <- stringr::str_replace(urls, "[\\.,;)]+$", "")
data.frame(
URL = urls,
Parent = gsub("^\\./", "", file_path),
stringsAsFactors = FALSE
)
}
r_file_urls <- do.call(rbind, lapply(r_files, extract_urls_from_file))
# Step 3: Combine the two sources
total <- rbind(sources, r_file_urls)
# Step 4: Check URLs and update
results <- urlchecker::url_check(db = total)
invisible(urlchecker::url_update(results = results))
}
# Style pkg ---------------------------------------------------------------
@@ -679,5 +796,6 @@ if (files_changed("README.Rmd") ||
}
# Finished ----------------------------------------------------------------
rm(antimicrobials)
usethis::ui_done("All done")
suppressMessages(reset_AMR_locale())

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@@ -1 +1 @@
a6b3279028d26ee414c47e7a074b420c
17cd1c8d89d7fca96fe7e1e761a75dfa

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@@ -1,499 +1,499 @@
"ab" "cid" "name" "group" "atc" "atc_group1" "atc_group2" "abbreviations" "synonyms" "oral_ddd" "oral_units" "iv_ddd" "iv_units" "loinc"
"AMA" 4649 "4-aminosalicylic acid" "Antimycobacterials" "J04AA01" "Drugs for treatment of tuberculosis" "Aminosalicylic acid and derivatives" "NA" "aminacyl,aminopar,aminosalyl,aminox,apacil,deapasil,entepas,gabbropas,granupas,helipidyl,hellipidyl,nemasol,nippas,osacyl,pamacyl,pamisyl,paramisan,paramycin,parasal,parasalicil,parasalindon,pasade,pasalon,pasara,pascorbic,pasdium,pasem,paser,pasmed,pasnal,pasnodia,pasolac,passodico,pharmakon,propasa,rezipas,salvis,sanipirol,sanipriol,sodiopas,spectrum" 12 "g" "NA"
"ACM" 6450012 "Acetylmidecamycin" "Macrolides/lincosamides" "NA" "NA" "NA" "NA"
"ASP" 49787020 "Acetylspiramycin" "Macrolides/lincosamides" "NA" "NA" "antibiotic,espiramicin,espiramicina,foromacidin,provamycin,rovamicina,rovamycin,rovamycine,selectomycin,sequamycin,spiramycine,spiramycinum" "NA"
"ALS" 8954 "Aldesulfone sodium" "Other antibacterials" "J04BA03" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "NA" "adesulfone,aldapsone,aldesulfone,aldesulphone,diamidin,diason,diasone,diasoneenterab,diazon,didimethanesulfinate,novotrone,sulfoxone" 0.33 "g" "NA"
"ACM" 6450012 "Acetylmidecamycin" "Macrolides" "NA" "NA" "NA" "NA"
"ASP" 49787020 "Acetylspiramycin" "Macrolides" "NA" "NA" "antibiotic,espiramicin,espiramicina,foromacidin,provamycin,rovamicina,rovamycin,rovamycine,selectomycin,sequamycin,spiramycine,spiramycinum" "NA"
"ALS" 8954 "Aldesulfone sodium" "Other" "J04BA03" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "NA" "adesulfone,aldapsone,aldesulfone,aldesulphone,diamidin,diason,diasone,diasoneenterab,diazon,didimethanesulfinate,novotrone,sulfoxone" 0.33 "g" "NA"
"AMK" 37768 "Amikacin" "Aminoglycosides" "D06AX12,J01GB06,QD06AX12,QJ01GB06,QS01AA21,S01AA21" "Aminoglycoside antibacterials" "Other aminoglycosides" "ak,ami,amik,amikac,amk,an" "amikacillin,amikacina,amikacine,amikacinum,amikavet,amikin,amikozit,amukin,arikace,briclin,butirosins,kaminax,lukadin,mikavir,potentox,prestwick" 1 "g" "101493-5,11-7,12-5,13-3,13546-7,14-1,15098-7,17798-0,18860-7,20373-7,23624-0,25174-4,25175-1,25176-9,25177-7,25178-5,25179-3,31097-9,31098-7,31099-5,3319-1,3320-9,3321-7,35669-1,42642-9,48169-7,50802-8,50803-6,56628-1,59378-0,60564-2,60565-9,6975-7,80972-3,89484-0"
"AKF" "Amikacin/fosfomycin" "Aminoglycosides" "NA" "NA" "NA" "NA"
"AMO" 54260 "Amorolfine" "Antifungals/antimycotics" "D01AE16,QD01AE16" "Antifungals for topical use" "Other antifungals for topical use" "amor" "amorolfina,amorolfinum,bekiron,corbel,curanail,fenpropemorph,fenpropimorph,fenpropimorphe,forbel,funbas,loceryl,locetar,mildofix,mistral,morpholine,odenil,omicur,pekiron" "NA"
"AMX" 33613 "Amoxicillin" "Beta-lactams/penicillins" "J01CA04,QG51AA03,QJ01CA04" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "ac,amox,amoxic,amx" "acuotricina,alfamox,alfida,amitron,amoclen,amodex,amoksicillin,amolin,amopen,amopenixin,amophar,amoran,amoxi,amoxicaps,amoxicilina,amoxicilline,amoxicillinum,amoxidal,amoxiden,amoxil,amoxillat,amoxina,amoxine,amoxipen,amoxivet,amoxycillin,amoxycillinsalt,amoxyke,anemolin,aspenil,atoksilin,bristamox,cemoxin,ciblor,clamoxyl,damoxy,danoxillin,delacillin,demoksil,dispermox,efpenix,eupen,flemoxin,flemoxine,galenamox,gramidil,hiconcil,himinomax,histocillin,ibiamox,imacillin,izoltil,kentrocyllin,lamoxy,largopen,larotid,matasedrin,metifarma,moksilin,moxacin,moxal,moxaline,moxatag,neotetranase,novabritine,ospamox,pacetocin,pamocil,paradroxil,pasetocin,penamox,piramox,promoxil,quimiopen,remoxil,riotapen,robamox,sawacillin,siganopen,simplamox,sintopen,sumox,topramoxin,trifamox,trimox,unicillin,utimox,velamox,vetramox,wymox,zamocillin,zamocilline,zimox" 1.5 "g" 3 "g" "101498-4,15-8,16-6,16365-9,17-4,18-2,18861-5,18862-3,19-0,20-8,21-6,22-4,25274-2,25310-4,3344-9,55614-2,55615-9,55616-7,6976-5,6977-3,80133-2"
"AMC" 23665637 "Amoxicillin/clavulanic acid" "Beta-lactams/penicillins" "J01CR02,QJ01CR02" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "a/c,amcl,aml,amocla,aug,xl" "amocla,amoclan,amoclav,amoksiclav,amoxsiklav,amoxyclav,ancla,augmentan,augmentin,augmentine,auspilic,clamentin,clamobit,clavam,clavamox,clavinex,clavumox,coamoxiclav,curam,eumetinex,kesium,kmoxilin,spectramox,synulox,viaclav,xiclav" 1.5 "g" 3 "g" "NA"
"AXS" 465441 "Amoxicillin/sulbactam" "Beta-lactams/penicillins" "J01CR02,QJ01CR02" "NA" "NA" 1.5 "g" 3 "g" "55614-2,55615-9,55616-7"
"AMB" 5280965 "Amphotericin B" "Antifungals/antimycotics" "A01AB04,A07AA07,G01AA03,J02AA01,QA01AB04,QA07AA07,QG01AA03,QJ02AA01" "Antimycotics for systemic use" "Antibiotics" "amf,amfb,amph,amphot" "abelcet,abelecet,ambil,ambisome,amphocin,amphomoronal,amphotec,amphotericin,amphotocerin,amphozone,funganiline,fungilin,fungisome,fungisone,fungizone,halizon,nystatine,nystatinum,terrastatin" 40 "mg" 210 "mg" "16370-9,18863-1,23-2,24-0,25-7,26-5,3353-0,3354-8,40707-2,40757-7,49859-2,6978-1"
"AMH" "Amphotericin B-high" "Antifungals/antimycotics" "NA" "amfo b high,amhl,ampho b high,amphotericin high" "NA" "NA"
"AMP" 6249 "Ampicillin" "Beta-lactams/penicillins" "J01CA01,QJ01CA01,QJ51CA01,QS01AA19,S01AA19" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "am,amp,amp100,amp200,ampi,ampici" "adobacillin,alpen,amblosin,amcap,amcill,amfipen,ampen,amperil,ampichel,ampicilina,ampicillina,ampicilline,ampicillinesalt,ampicillinsalt,ampicillinum,ampifarm,ampikel,ampimed,ampinova,ampipenin,ampiscel,ampisyn,ampivax,ampivet,amplacilina,amplin,amplipenyl,amplisom,amplital,austrapen,bayer,binotal,bonapicillin,britacil,cimex,citteral,copharcilin,cymbi,delcillin,deripen,divercillin,doktacillin,domicillin,duphacillin,grampenil,guicitrina,guicitrine,lifeampil,marcillin,morepen,norobrittin,nuvapen,omnipen,orbicilina,penbristol,penbritin,penbrock,penialmen,penicline,penimic,penizillin,pensyn,pentrex,pentrexl,pentrexyl,pentritin,ponecil,princillin,principen,racenacillin,redicilin,rosampline,roscillin,semicillin,servicillin,sumipanto,supen,synpenin,texcillin,tokiocillin,tolomol,totacillin,totalciclina,totapen,trafarbiot,trifacilina,ukapen,ultrabion,ultrabron,vampen,viccillin,vidocillin,wypicil" 2 "g" 6 "g" "101477-8,101478-6,18864-9,18865-6,20374-5,21066-6,23618-2,27-3,28-1,29-9,30-7,31-5,32-3,33-1,3355-5,33562-0,33919-2,34-9,43883-8,43884-6,6979-9,6980-7,87604-5"
"SAM" 119561 "Ampicillin/sulbactam" "Beta-lactams/penicillins" "J01CR01,QJ01CR01" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "a/s,ab,ampsul,ams,amsu,apsu,sam" "sulacillin" 6 "g" "101478-6,18865-6,20374-5,23618-2,31-5,32-3,33-1,34-9,6980-7"
"AMR" 73341 "Amprolium" "Other antibacterials" "QP51BX02" "NA" "amprol,amprolio,amprovine,anticoccid,cocciprol,corid,mepyrium,picolinium,pyridinium,thiacoccid" "NA"
"ANI" 166548 "Anidulafungin" "Antifungals/antimycotics" "J02AX06,QJ02AX06" "Antimycotics for systemic use" "Other antimycotics for systemic use" "anid,anidul" "anidulafungina,anidulafungine,anidulafunginum,biafungin,ecalta,eraxis" 0.1 "g" "55343-8,57095-2,58420-1,77162-6"
"APL" 6602341 "Apalcillin" "Beta-lactams/penicillins" "NA" "apalci" "apalcilina,apalcilline,apalcillinsalt,apalcillinum,lumota" "NA"
"AKF" "Amikacin/fosfomycin" "Aminoglycosides,Phosphonics" "NA" "NA" "NA" "NA"
"AMO" 54260 "Amorolfine" "Antifungals" "D01AE16,QD01AE16" "Antifungals for topical use" "Other antifungals for topical use" "amor" "amorolfina,amorolfinum,bekiron,corbel,curanail,fenpropemorph,fenpropimorph,fenpropimorphe,forbel,funbas,loceryl,locetar,mildofix,mistral,morpholine,odenil,omicur,pekiron" "NA"
"AMX" 33613 "Amoxicillin" "Aminopenicillins,Penicillins,Beta-lactams" "J01CA04,QG51AA03,QJ01CA04" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "ac,amox,amoxic,amx" "acuotricina,alfamox,alfida,amitron,amoclen,amodex,amoksicillin,amolin,amopen,amopenixin,amophar,amoran,amoxi,amoxicaps,amoxicilina,amoxicilline,amoxicillinum,amoxidal,amoxiden,amoxil,amoxillat,amoxina,amoxine,amoxipen,amoxivet,amoxycillin,amoxycillinsalt,amoxyke,anemolin,aspenil,atoksilin,bristamox,cemoxin,ciblor,clamoxyl,damoxy,danoxillin,delacillin,demoksil,dispermox,efpenix,eupen,flemoxin,flemoxine,galenamox,gramidil,hiconcil,himinomax,histocillin,ibiamox,imacillin,izoltil,kentrocyllin,lamoxy,largopen,larotid,matasedrin,metifarma,moksilin,moxacin,moxal,moxaline,moxatag,neotetranase,novabritine,ospamox,pacetocin,pamocil,paradroxil,pasetocin,penamox,piramox,promoxil,quimiopen,remoxil,riotapen,robamox,sawacillin,siganopen,simplamox,sintopen,sumox,topramoxin,trifamox,trimox,unicillin,utimox,velamox,vetramox,wymox,zamocillin,zamocilline,zimox" 1.5 "g" 3 "g" "101498-4,15-8,16-6,16365-9,17-4,18-2,18861-5,18862-3,19-0,20-8,21-6,22-4,25274-2,25310-4,3344-9,55614-2,55615-9,55616-7,6976-5,6977-3,80133-2"
"AMC" 23665637 "Amoxicillin/clavulanic acid" "Aminopenicillins,Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR02,QJ01CR02" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "a/c,amcl,aml,amocla,aug,xl" "amocla,amoclan,amoclav,amoksiclav,amoxsiklav,amoxyclav,ancla,augmentan,augmentin,augmentine,auspilic,clamentin,clamobit,clavam,clavamox,clavinex,clavumox,coamoxiclav,curam,eumetinex,kesium,kmoxilin,spectramox,synulox,viaclav,xiclav" 1.5 "g" 3 "g" "NA"
"AXS" 465441 "Amoxicillin/sulbactam" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR02,QJ01CR02" "NA" "NA" 1.5 "g" 3 "g" "55614-2,55615-9,55616-7"
"AMB" 5280965 "Amphotericin B" "Antifungals" "A01AB04,A07AA07,G01AA03,J02AA01,QA01AB04,QA07AA07,QG01AA03,QJ02AA01" "Antimycotics for systemic use" "Antibiotics" "amf,amfb,amph,amphot" "abelcet,abelecet,ambil,ambisome,amphocin,amphomoronal,amphotec,amphotericin,amphotocerin,amphozone,funganiline,fungilin,fungisome,fungisone,fungizone,halizon,nystatine,nystatinum,terrastatin" 40 "mg" 210 "mg" "16370-9,18863-1,23-2,24-0,25-7,26-5,3353-0,3354-8,40707-2,40757-7,49859-2,6978-1"
"AMH" "Amphotericin B-high" "Antifungals" "NA" "amfo b high,amhl,ampho b high,amphotericin high" "NA" "NA"
"AMP" 6249 "Ampicillin" "Aminopenicillins,Penicillins,Beta-lactams" "J01CA01,QJ01CA01,QJ51CA01,QS01AA19,S01AA19" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "am,amp,amp100,amp200,ampi,ampici" "adobacillin,alpen,amblosin,amcap,amcill,amfipen,ampen,amperil,ampichel,ampicilina,ampicillina,ampicilline,ampicillinesalt,ampicillinsalt,ampicillinum,ampifarm,ampikel,ampimed,ampinova,ampipenin,ampiscel,ampisyn,ampivax,ampivet,amplacilina,amplin,amplipenyl,amplisom,amplital,austrapen,bayer,binotal,bonapicillin,britacil,cimex,citteral,copharcilin,cymbi,delcillin,deripen,divercillin,doktacillin,domicillin,duphacillin,grampenil,guicitrina,guicitrine,lifeampil,marcillin,morepen,norobrittin,nuvapen,omnipen,orbicilina,penbristol,penbritin,penbrock,penialmen,penicline,penimic,penizillin,pensyn,pentrex,pentrexl,pentrexyl,pentritin,ponecil,princillin,principen,racenacillin,redicilin,rosampline,roscillin,semicillin,servicillin,sumipanto,supen,synpenin,texcillin,tokiocillin,tolomol,totacillin,totalciclina,totapen,trafarbiot,trifacilina,ukapen,ultrabion,ultrabron,vampen,viccillin,vidocillin,wypicil" 2 "g" 6 "g" "101477-8,101478-6,18864-9,18865-6,20374-5,21066-6,23618-2,27-3,28-1,29-9,30-7,31-5,32-3,33-1,3355-5,33562-0,33919-2,34-9,43883-8,43884-6,6979-9,6980-7,87604-5"
"SAM" 119561 "Ampicillin/sulbactam" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR01,QJ01CR01" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "a/s,ab,ampsul,ams,amsu,apsu,sam" "sulacillin" 6 "g" "101478-6,18865-6,20374-5,23618-2,31-5,32-3,33-1,34-9,6980-7"
"AMR" 73341 "Amprolium" "Other" "QP51BX02" "NA" "amprol,amprolio,amprovine,anticoccid,cocciprol,corid,mepyrium,picolinium,pyridinium,thiacoccid" "NA"
"ANI" 166548 "Anidulafungin" "Antifungals" "J02AX06,QJ02AX06" "Antimycotics for systemic use" "Other antimycotics for systemic use" "anid,anidul" "anidulafungina,anidulafungine,anidulafunginum,biafungin,ecalta,eraxis" 0.1 "g" "55343-8,57095-2,58420-1,77162-6"
"APL" 6602341 "Apalcillin" "Penicillins,Beta-lactams" "NA" "apalci" "apalcilina,apalcilline,apalcillinsalt,apalcillinum,lumota" "NA"
"APR" 3081545 "Apramycin" "Aminoglycosides" "QA07AA92,QJ01GB90,QJ51GB90" "apramy" "ambylan,apralan,apramicina,apramycine,apramycinum" "23659-6,73652-0,73653-8"
"ARB" 68682 "Arbekacin" "Aminoglycosides" "J01GB12,QJ01GB12" "arbeka" "arbekacina,arbekacine,arbekacinum,haberacin" 0.2 "g" "32373-3,53818-1,54173-0"
"APX" 71961 "Aspoxicillin" "Beta-lactams/penicillins" "J01CA19,QJ01CA19" "apoxic,aspoxi" "aspoxicilina,aspoxicillan,aspoxicilline,aspoxicillinum,doyle" 4 "g" "NA"
"APX" 71961 "Aspoxicillin" "Penicillins,Beta-lactams" "J01CA19,QJ01CA19" "apoxic,aspoxi" "aspoxicilina,aspoxicillan,aspoxicilline,aspoxicillinum,doyle" 4 "g" "NA"
"AST" 5284517 "Astromicin" "Aminoglycosides" "NA" "astrom" "abbott,astromicina,astromicine,astromicinum,fortimicin,istamycin,istamycins" "NA"
"AVB" 9835049 "Avibactam" "Beta-lactams/penicillins" "NA" "NA" "avibactamfreeacid" "NA"
"AVI" 71674 "Avilamycin" "Other antibacterials" "QA07AA95" "avilam" "avilamycina,avilamycine,avilamycinum,inteprity,kavault,surmax" "35754-1,35755-8,35756-6,55619-1"
"AVB" 9835049 "Avibactam" "Beta-lactamase inhibitors" "NA" "NA" "avibactamfreeacid" "NA"
"AVI" 71674 "Avilamycin" "Other" "QA07AA95" "avilam" "avilamycina,avilamycine,avilamycinum,inteprity,kavault,surmax" "35754-1,35755-8,35756-6,55619-1"
"AVO" 16131159 "Avoparcin" "Glycopeptides" "NA" "NA" "firvanq,tagocid,targocid,targosid,tecoplanina,tecoplanine,tecoplaninum,teichomycin,teicoplanina,teicoplanine,teicoplaninum,teikoplanin,ticocin" "NA"
"AZD" 15574941 "Azidocillin" "Beta-lactams/penicillins" "J01CE04,QJ01CE04" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "azidocilina,azidocillina,azidocilline,azidocillinum" 1.5 "g" "NA"
"AZM" 447043 "Azithromycin" "Macrolides/lincosamides" "J01FA10,QJ01FA10,QS01AA26,S01AA26" "Macrolides, lincosamides and streptogramins" "Macrolides" "az,azi,azit,azithr,azm" "aritromicina,aruzilina,azasite,azenil,azifast,azigram,azimakrol,azithramycine,azithrocin,azithromycine,azithromycinum,azitrocin,azitromax,azitromicina,azitromicine,azitromin,aziwin,aziwok,aztrin,azyter,hemomycin,macrozit,misultina,mixoterin,setron,sumamed,tobil,toraseptol,tromix,trozocina,trulimax,xithrone,zentavion,zifin,zithrax,zithromac,zithromax,zitrim,zitromax,zitrotek,zythromax" 0.3 "g" 0.5 "g" "100043-9,16420-2,16421-0,18866-4,23612-5,25233-8,35-6,36-4,37-2,38-0,6981-5,89480-8"
"AFC" "Azithromycin/fluconazole/secnidazole" "Other antibacterials" "J01RA07,QJ01RA07" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"AZL" 6479523 "Azlocillin" "Beta-lactams/penicillins" "J01CA09,QJ01CA09" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "az,azl,azlo,azloci" "azlin,azlocilina,azlocilline,azlocillinsalt,azlocillinum,securopen" 12 "g" "16422-8,18867-2,3368-8,39-8,40-6,41-4,41661-0,42-2"
"ATM" 5742832 "Aztreonam" "Monobactams" "J01DF01,QJ01DF01" "Other beta-lactam antibacterials" "Monobactams" "at,atm,azm,azt,azt1,aztr,aztreo" "azactam,azetreonam,azonam,azthreonam,aztreon,aztreonamum,cayston,dynabiotic,nebactam,primbactam,squibb" 4 "g" "101497-6,16423-6,18868-0,25234-6,3369-6,41662-8,41663-6,41664-4,41727-9,43-0,44-8,45-5,46-3,6982-3"
"AZA" "Aztreonam/avibactam" "Monobactams" "J01DF51,QJ01DF51" "NA" "NA" "NA"
"ANC" "Aztreonam/nacubactam" "Monobactams" "J01DF51,QJ01DF51" "NA" "NA" "NA"
"BAM" 441397 "Bacampicillin" "Beta-lactams/penicillins" "J01CA06,QJ01CA06" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "bacamp" "alphacilina,alphacillin,ambacamp,ambaxin,bacacil,bacampicilina,bacampicilline,bacampicillinum,bacampicine,berocillin,centurina,devonium,diancina,inacilin,maxifen,penglobe,pivatil,pondocil,pondocillin,pondocillina,sanguicillin,spectrobid,velbacil" 1.2 "g" "18869-8,47-1,48-9,49-7,50-5,55620-9"
"BAC" 78358334 "Bacitracin" "Other antibacterials" "D06AX05,J01XX10,QA07AA93,QD06AX05,QJ01XX10,QR02AB04,QS01AA32,R02AB04,S01AA32" "baci,bacitr" "albac,altracin,ayfivin,baciferm,baciguent,baciim,baciliquin,bacilliquin,baciquent,bacitracina,bacitracine,bacitracinum,fortracin,mycitracin,parentracin,penitracin,septa,topitracin,topitrasin,tropitracin,zutracin" "10868-8,16428-5,18870-6,6827-0,6983-1,87603-7"
"BDQ" 5388906 "Bedaquiline" "Other antibacterials" "J04AK05,QJ04AK05" "NA" "NA" 86 "mg" "80637-2,88703-4,88704-2,94274-8,96107-8"
"AZD" 15574941 "Azidocillin" "Penicillins,Beta-lactams" "J01CE04,QJ01CE04" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "azidocilina,azidocillina,azidocilline,azidocillinum" 1.5 "g" "NA"
"AZM" 447043 "Azithromycin" "Macrolides" "J01FA10,QJ01FA10,QS01AA26,S01AA26" "Macrolides, lincosamides and streptogramins" "Macrolides" "az,azi,azit,azithr,azm" "aritromicina,aruzilina,azasite,azenil,azifast,azigram,azimakrol,azithramycine,azithrocin,azithromycine,azithromycinum,azitrocin,azitromax,azitromicina,azitromicine,azitromin,aziwin,aziwok,aztrin,azyter,hemomycin,macrozit,misultina,mixoterin,setron,sumamed,tobil,toraseptol,tromix,trozocina,trulimax,xithrone,zentavion,zifin,zithrax,zithromac,zithromax,zitrim,zitromax,zitrotek,zythromax" 0.3 "g" 0.5 "g" "100043-9,16420-2,16421-0,18866-4,23612-5,25233-8,35-6,36-4,37-2,38-0,6981-5,89480-8"
"AFC" "Azithromycin/fluconazole/secnidazole" "Other" "J01RA07,QJ01RA07" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"AZL" 6479523 "Azlocillin" "Ureidopenicillins,Penicillins,Beta-lactams" "J01CA09,QJ01CA09" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "az,azl,azlo,azloci" "azlin,azlocilina,azlocilline,azlocillinsalt,azlocillinum,securopen" 12 "g" "16422-8,18867-2,3368-8,39-8,40-6,41-4,41661-0,42-2"
"ATM" 5742832 "Aztreonam" "Monobactams,Beta-lactams" "J01DF01,QJ01DF01" "Other beta-lactam antibacterials" "Monobactams" "at,atm,azm,azt,azt1,aztr,aztreo" "azactam,azetreonam,azonam,azthreonam,aztreon,aztreonamum,cayston,dynabiotic,nebactam,primbactam,squibb" 4 "g" "101497-6,16423-6,18868-0,25234-6,3369-6,41662-8,41663-6,41664-4,41727-9,43-0,44-8,45-5,46-3,6982-3"
"AZA" "Aztreonam/avibactam" "Monobactams,Beta-lactams,Beta-lactamase inhibitors" "J01DF51,QJ01DF51" "NA" "NA" "NA"
"ANC" "Aztreonam/nacubactam" "Monobactams,Beta-lactams,Beta-lactamase inhibitors" "J01DF51,QJ01DF51" "NA" "NA" "NA"
"BAM" 441397 "Bacampicillin" "Penicillins,Beta-lactams" "J01CA06,QJ01CA06" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "bacamp" "alphacilina,alphacillin,ambacamp,ambaxin,bacacil,bacampicilina,bacampicilline,bacampicillinum,bacampicine,berocillin,centurina,devonium,diancina,inacilin,maxifen,penglobe,pivatil,pondocil,pondocillin,pondocillina,sanguicillin,spectrobid,velbacil" 1.2 "g" "18869-8,47-1,48-9,49-7,50-5,55620-9"
"BAC" 78358334 "Bacitracin" "Other" "D06AX05,J01XX10,QA07AA93,QD06AX05,QJ01XX10,QR02AB04,QS01AA32,R02AB04,S01AA32" "baci,bacitr" "albac,altracin,ayfivin,baciferm,baciguent,baciim,baciliquin,bacilliquin,baciquent,bacitracina,bacitracine,bacitracinum,fortracin,mycitracin,parentracin,penitracin,septa,topitracin,topitrasin,tropitracin,zutracin" "10868-8,16428-5,18870-6,6827-0,6983-1,87603-7"
"BDQ" 5388906 "Bedaquiline" "Other" "J04AK05,QJ04AK05" "NA" "NA" 86 "mg" "80637-2,88703-4,88704-2,94274-8,96107-8"
"BEK" 439318 "Bekanamycin" "Aminoglycosides" "J01GB13,QJ01GB13" "NA" "aminodeoxykanamycin,becanamicina,bekanamicina,bekanamycine,bekanamycinum" 0.6 "g" "NA"
"BNB" "Benzathine benzylpenicillin" "Beta-lactams/penicillins" "J01CE08,QJ01CE08" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "NA" 3.6 "g" "NA"
"BNP" 64725 "Benzathine phenoxymethylpenicillin" "Beta-lactams/penicillins" "J01CE10,QJ01CE10" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "bicillin,biphecillin" 2 "g" "NA"
"PEN" 5904 "Benzylpenicillin" "Beta-lactams/penicillins" "J01CE01,QJ01CE01,QJ51CE01,QS01AA14,S01AA14" "Combinations of antibacterials" "Combinations of antibacterials" "bepe,pen,peni,peni g,penic8,penica,penici,penicillin,penicillin g,penora,pg" "bencilpenicilina,benzopenicillin,benzylpenicilline,benzylpenicillinum,capicillin,cillora,cilloral,cilopen,cintrisul,cosmopen,cristapen,crystapen,dropcillin,eskacillin,falapen,forpen,galofak,gelacillin,hipercilina,hyasorb,hylenta,lemopen,liquacillin,liquapen,monocillin,monopen,mycofarm,novocillin,penalev,penicillinum,penilaryn,penisem,pentid,pentids,pfizerpen,pharmacillin,pradupen,scotcil,sugracillin,sugracillinsalt,tabilin,ursopen,veticillin" 3.6 "g" "NA"
"PEN-S" "Benzylpenicillin screening test" "Beta-lactams/penicillins" "NA" "pen screen" "NA" "NA"
"BES" 10178705 "Besifloxacin" "Fluoroquinolones" "QS01AE08,S01AE08" "besifl" "besivance" "73606-6,73628-0,73651-2"
"BNB" "Benzathine benzylpenicillin" "Penicillins,Beta-lactams" "J01CE08,QJ01CE08" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "NA" 3.6 "g" "NA"
"BNP" 64725 "Benzathine phenoxymethylpenicillin" "Penicillins,Beta-lactams" "J01CE10,QJ01CE10" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "bicillin,biphecillin" 2 "g" "NA"
"PEN" 5904 "Benzylpenicillin" "Penicillins,Beta-lactams" "J01CE01,QJ01CE01,QJ51CE01,QS01AA14,S01AA14" "Combinations of antibacterials" "Combinations of antibacterials" "bepe,pen,peni,peni g,penic8,penica,penici,penicillin,penicillin g,penora,pg" "bencilpenicilina,benzopenicillin,benzylpenicilline,benzylpenicillinum,capicillin,cillora,cilloral,cilopen,cintrisul,cosmopen,cristapen,crystapen,dropcillin,eskacillin,falapen,forpen,galofak,gelacillin,hipercilina,hyasorb,hylenta,lemopen,liquacillin,liquapen,monocillin,monopen,mycofarm,novocillin,penalev,penicillinum,penilaryn,penisem,pentid,pentids,pfizerpen,pharmacillin,pradupen,scotcil,sugracillin,sugracillinsalt,tabilin,ursopen,veticillin" 3.6 "g" "NA"
"PEN-S" "Benzylpenicillin screening test" "Penicillins,Beta-lactams" "NA" "pen screen" "NA" "NA"
"BES" 10178705 "Besifloxacin" "Fluoroquinolones,Quinolones" "QS01AE08,S01AE08" "besifl" "besivance" "73606-6,73628-0,73651-2"
"BLA-S" "Beta-lactamase screening test" "Other" "NA" "beta-lactamase,betalactamase,bl screen,blt screen" "NA" "NA"
"BIA" 71339 "Biapenem" "Carbapenems" "J01DH05,QJ01DH05" "biapen" "biapenern,omegacin" 1.2 "g" "41665-1,41666-9,41667-7,41728-7"
"BCZ" 65807 "Bicyclomycin" "Other antibacterials" "NA" "bicozamycin" "aizumycin,bacfeed,bacteron,bicozamicina,bicozamycin,bicozamycine,bicozamycinum" "NA"
"BIA" 71339 "Biapenem" "Carbapenems,Beta-lactams" "J01DH05,QJ01DH05" "biapen" "biapenern,omegacin" 1.2 "g" "41665-1,41666-9,41667-7,41728-7"
"BCZ" 65807 "Bicyclomycin" "Other" "NA" "bicozamycin" "aizumycin,bacfeed,bacteron,bicozamicina,bicozamycin,bicozamycine,bicozamycinum" "NA"
"BLM" 5360373 "Bleomycin" "Glycopeptides" "L01DC01,QL01DC01" "NA" "blenamax,blenoxane,bleocin,bleomicin,bleomicina,bleomycine,bleomycins,bleomycinum,blexane,nbleomycinamide" "NA"
"BDP" 68760 "Brodimoprim" "Trimethoprims" "J01EA02,QJ01EA02" "Sulfonamides and trimethoprim" "Trimethoprim and derivatives" "NA" "brodimoprima,brodimoprime,brodimoprimum,bromdimoprim,hyprim,unitrim" 0.2 "g" "NA"
"BUT" 47472 "Butoconazole" "Antifungals/antimycotics" "G01AF15,QG01AF15" "NA" "butaconazole,butoconazol,butoconazolum,gynofort" "NA"
"BUT" 47472 "Butoconazole" "Antifungals" "G01AF15,QG01AF15" "NA" "butaconazole,butoconazol,butoconazolum,gynofort" "NA"
"CDZ" 44242317 "Cadazolid" "Oxazolidinones" "NA" "NA" "NA" "NA"
"CLA" "Calcium aminosalicylate" "Antimycobacterials" "J04AA03,QJ04AA03" "Drugs for treatment of tuberculosis" "Aminosalicylic acid and derivatives" "NA" "NA" 15 "g" "NA"
"CAP" 135565060 "Capreomycin" "Antimycobacterials" "J04AB30,QJ04AB30" "Drugs for treatment of tuberculosis" "Antibiotics" "capr,capreo" "NA" 1 "g" "16545-6,18872-2,23607-5,25210-6,25211-4,25212-2,42643-7,48170-5,55-4,55623-3,56-2,57-0,58-8,61355-4,89483-2"
"CRB" 20824 "Carbenicillin" "Beta-lactams/penicillins" "J01CA03,QJ01CA03" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "bar,carb,carben,cb" "anabactyl,carbecin,carbenicilina,carbenicillina,carbenicilline,carbenicillinum,dicarbenicillin,dipenicillin,fugacillin,geopen,gripenin,hyoper,microcillin,piopen,pyocianil,pyoclox,pyopan,pyopen,pyopene" 12 "g" "18873-0,3434-8,41668-5,59-6,60-4,61-2,62-0"
"CRN" 93184 "Carindacillin" "Beta-lactams/penicillins" "J01CA05,QJ01CA05" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "carindacilina,carindacilline,carindacillinsalt,carindacillinum,geocillin,indanylcarbinicillin,urobac" 4 "g" "NA"
"CAR" 6540466 "Carumonam" "Monobactams" "J01DF02,QJ01DF02" "NA" "carumonamum" 2 "g" "51694-8"
"CAS" 2826718 "Caspofungin" "Antifungals/antimycotics" "J02AX04,QJ02AX04" "Antimycotics for systemic use" "Other antimycotics for systemic use" "casp,caspof" "cancidas,caspofungina" 50 "mg" "32378-2,54175-5,54176-3,54185-4,58419-3"
"CAC" 91562 "Cefacetrile" "Cephalosporins (1st gen.)" "J01DB10,QJ01DB10,QJ51DB10" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephac" "cefacetril,cefacetrilo,cefacetrilum,celospor,cephacetrile,vetrimast" "55624-1,55625-8,55626-6,55627-4"
"CEC" 51039 "Cefaclor" "Cephalosporins (2nd gen.)" "J01DC04,QJ01DC04" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "ccl,cec,cefacl,cf,cfac,cfc,cfcl,cfr,fac" "alenfral,alfacet,alfatil,ceclor,cefachlor,cefaclorum,cefeaclor,cephaclor,compound,distaclor,keflor,kefolor,kefral,keftab,keftid,lilly,lopac,panacef,panoral,raniclor" 1 "g" "16564-7,18874-8,21149-0,6986-4,83-6,84-4,85-1,86-9"
"CFR" 47965 "Cefadroxil" "Cephalosporins (1st gen.)" "J01DB05,QJ01DB05" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefadr,cfdx,cfr,fad" "bidocel,cefadrops,cefadroxilo,cefadroxilum,cefradroxil,cefzil,cephadroxil,duracef,duricef,kefroxil,sumacef,ultracef" 2 "g" "16565-4,18875-5,55628-2,63-8,64-6,65-3,66-1"
"LEX" 27447 "Cefalexin" "Cephalosporins (1st gen.)" "J01DB01,QJ01DB01,QJ51DB01" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cepale,cflx" "adcadina,alcephin,alsporin,ambal,amplex,aristosporin,azabort,bactopenor,beliam,biocef,carnosporin,cefablan,cefacet,cefadal,cefadin,cefadina,cefalekey,cefaleksin,cefalessina,cefalexgobens,cefalexina,cefalexine,cefalexinum,cefalin,cefalival,cefaloto,cefanex,cefaseptin,cefax,ceffanex,cefibacter,ceflax,ceforal,cefovit,celexin,cepastar,cepexin,cephacillin,cephalexine,cephalexinum,cephalobene,cephanasten,cephaxin,cephin,cepol,ceporex,ceporexin,ceporexine,cerexin,cerexins,check,cophalexin,domucef,doriman,durantel,efemida,erocetin,factagard,felexin,fexin,ibilex,ibrexin,inphalex,karilexina,kefalospes,keflet,keflex,kefolan,keforal,kekrinal,kidolex,lafarine,larixin,lenocef,lexibiotico,loisine,lonflex,lopilexin,losporal,madlexin,maksipor,mamalexin,mamlexin,medolexin,medoxine,neokef,neolexina,noveol,novolexin,nufex,optocef,oracef,oriphex,oroxin,ortisporina,ospexin,palitrex,panixine,pectril,prindex,pyassan,rilexine,roceph,rogevil,sanaxin,sartosona,sencephalin,sepexin,servicef,servispor,sialexin,sinthecillin,sintolexyn,sporicef,sporidex,syncl,syncle,synecl,taicelexin,tepaxin,theratrex,tokiolexin,uphalexin,viosporine,voxxim,winlex,zabytrex,zozarine" 2 "g" "NA"
"RID" 5773 "Cefaloridine" "Cephalosporins (1st gen.)" "J01DB02,QJ01DB02" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefa,ceplor" "aliporina,ampligram,cefaloridin,cefaloridina,cefaloridinum,cefalorizin,ceflorin,cepaloridin,cepalorin,cephalomycine,cephaloridin,cephaloridine,cephaloridinum,ceporan,ceporin,ceporine,cilifor,deflorin,faredina,floridin,glaxoridin,intrasporin,keflodin,keflordin,kefloridin,kefspor,lloncefal,sasperin,sefacin,verolgin,vioviantine" 3 "g" "NA"
"CEP" 6024 "Cefalotin" "Cephalosporins (1st gen.)" "J01DB03,QJ01DB03" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephal,cfal,cflt" "averon,cefalothin,cefalothine,cefalothinsalt,cefalotina,cefalotine,cefalotinsalt,cefalotinum,cemastin,cephalothin,cephalothinsalt,cephalothinum,cephalotin,cephalotinsalt,ceporacin,cepovenin,coaxin,keflin,lospoven,microtin,seffin,synclotin,toricelocin" 4 "g" "NA"
"MAN" 456255 "Cefamandole" "Cephalosporins (2nd gen.)" "J01DC03,QJ01DC03" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefama,cfam,cfmn" "cefadole,cefamandol,cefamandolum,cephadole,kefamandol,kefdole,mancef" 6 "g" "18876-3,3441-3,41669-3,55634-0,55635-7,55636-5,55637-3,67-9,68-7,69-5,70-3"
"HAP" 30699 "Cefapirin" "Cephalosporins (1st gen.)" "J01DB08,QG51AA05,QJ01DB08,QJ51DB08" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephap" "ambrocef,brisfirina,brisporin,bristocef,cefadyl,cefalak,cefaloject,cefapirina,cefapirine,cefapirinsalt,cefapirinum,cefaprin,cefatrex,cefatrexyl,cephapirin,cephapirine,cephapirinsalt,cephatrexil,cephatrexyl,metricure" 4 "g" "NA"
"CTZ" 6410758 "Cefatrizine" "Cephalosporins (1st gen.)" "J01DB07,QJ01DB07" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefatr" "bricef,cefathiamidine,cefatrix,cefatrizino,cefatrizinum,cephatriazine,cepticol,cetrazil,latocef,orosporina,orotric,seapuron,trizina" 1 "g" "18877-1,55639-9,71-1,72-9,73-7,74-5"
"CZD" 71736 "Cefazedone" "Cephalosporins (1st gen.)" "J01DB06,QJ01DB06" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefaze" "cefazedon,cefazedona,cefazedonesalt,cefazedonum,refosporen,refosporene,refosporin,refosporinsalt" 3 "g" "NA"
"CZO" 33255 "Cefazolin" "Cephalosporins (1st gen.)" "J01DB04,QJ01DB04,QJ51DB04" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefazo,cfz,cfzl,cz,czol,faz,kz" "ancef,atirin,biazolina,cefabiozim,cefacidal,cefalomicina,cefamedin,cefamezin,cefazil,cefazina,cefazolina,cefazoline,cefazolinsalt,cefazolinum,cephamezine,cephazolidin,cephazolin,cephazoline,elzogram,firmacef,gramaxin,kefzol,lampocef,liviclina,neofazol,oprea,recef,totacef,zolicef,zolisint" 3 "g" "16566-2,18878-9,25235-3,3442-1,3443-9,41670-1,75-2,76-0,77-8,78-6,80962-4,85422-4"
"CFB" 127527 "Cefbuperazone" "Other antibacterials" "J01DC13,QJ01DC13" "cefbup" "cefbuperazona,cefbuperazonesalt,cefbuperazonum,cefbuperzaone,cerbuperazone,keiperazon,tomiporan" 2 "g" "NA"
"CCP" 6436055 "Cefcapene" "Cephalosporins (3rd gen.)" "J01DD17,QJ01DD17" "cefcap" "flomox" 0.45 "g" "100044-7,76143-7"
"CCX" 5282438 "Cefcapene pivoxil" "Cephalosporins (3rd gen.)" "NA" "NA" "cefcamate,flumax" "NA"
"CDR" 6915944 "Cefdinir" "Cephalosporins (3rd gen.)" "J01DD15,QJ01DD15" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cd,cdn,cdr,cefdin,cfd,din" "cefdinirum,cefdinyl,cefdirnir,ceftinex,cefzon,omnicef" 0.6 "g" "23636-4,23637-2,35757-4,35758-2"
"DIT" 9870843 "Cefditoren" "Cephalosporins (3rd gen.)" "J01DD16,QJ01DD16" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cdn,cefdit" "cefditoreno,spectracef" 0.4 "g" "35759-0,35760-8,35761-6,35762-4"
"DIX" 6437877 "Cefditoren pivoxil" "Cephalosporins (3rd gen.)" "NA" "NA" "cefditorin,meiact,pivaloyloxymethyl" "NA"
"FEP" 5479537 "Cefepime" "Cephalosporins (4th gen.)" "J01DE01,QJ01DE01" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "cefep4,cefepi,cfep,cfpi,cpe,cpm,fep,pm,xpm" "anticefepime,axepim,cefepima,cefepimum,maxipime,pyrrolidinium,renapime" 4 "g" "101502-3,18879-7,31142-3,31143-1,35763-2,38363-8,42350-9,42351-7,42353-3,50631-1,58412-8,6643-1,6644-9,6645-7,6646-5,6987-2,8272-7,8273-5"
"CFA" "Cefepime/amikacin" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CPC" 9567559 "Cefepime/clavulanic acid" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "cefcla,cicl,xpml" "NA" "NA"
"FPE" 23653540 "Cefepime/enmetazobactam" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FNC" "Cefepime/nacubactam" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FTA" "Cefepime/taniborbactam" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FPT" 9567558 "Cefepime/tazobactam" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FPZ" "Cefepime/zidebactam" "Cephalosporins (4th gen.)" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"CAT" 5487888 "Cefetamet" "Cephalosporins (3rd gen.)" "J01DD10,QJ01DD10" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefeta,cefmtm" "cefetametum,deacetoxycefotaxime,epocelin" 1 "g" "32377-4,35764-0,35765-7,55640-7"
"CPI" 5486182 "Cefetamet pivoxil" "Cephalosporins (3rd gen.)" "NA" "NA" "cefetametpivoxil,cefyl,globocef" "NA"
"CCL" 71719688 "Cefetecol" "Cephalosporins (4th gen.)" "NA" "cefcatacol" "NA" "NA"
"CZL" 193956 "Cefetrizole" "Cephalosporins (unclassified gen.)" "NA" "NA" "cefetrizolum" "NA"
"FDC" 77843966 "Cefiderocol" "Cephalosporins (unclassified gen.)" "J01DI04,QJ01DI04" "NA" "fetcroja" 6 "g" "95767-0,99280-0,99503-5"
"CFM" 5362065 "Cefixime" "Cephalosporins (3rd gen.)" "J01DD08,QJ01DD08" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefixi,cfe,cfix,cfxm,dcfm,fix,ix" "cefixim,cefixima,cefiximum,cefixoral,cefspan,cephoral,citropen,denvar,necopen,oraken,oroken,suprax,tricef,unixime" 0.4 "g" "16567-0,18880-5,25236-1,35766-5,79-4,80-2,81-0,82-8"
"CEO" "Cefixime/ornidazole" "Other antibacterials" "J01DD58,QJ01DD58" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CMX" 9570757 "Cefmenoxime" "Cephalosporins (3rd gen.)" "J01DD05,QJ01DD05,QS01AA31,QS02AA18,S01AA31,S02AA18" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefmen" "bestron,cefmenoxima,cefmenoximum,tacef" 2 "g" "32375-8,54174-8,54203-5,55641-5"
"CMZ" 42008 "Cefmetazole" "Cephalosporins (2nd gen.)" "J01DC09,QJ01DC09" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefmet" "cefmetazol,cefmetazolo,cefmetazolum,cefmetazon,metafar,zefazone" 4 "g" "11575-8,18881-3,25222-1,87-7,88-5,89-3,90-1"
"CNX" 71141 "Cefminox" "Other antibacterials" "J01DC12,QJ01DC12" "cefmin" "alteporina,cefminoxhydrate,cefminoxum,meicelin,tencef" 4 "g" "54908-9"
"DIZ" 5361871 "Cefodizime" "Cephalosporins (3rd gen.)" "J01DD09,QJ01DD09" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "NA" "cefodizima,cefodizimum,cefodizme,diezime,kenicef,modivid,neucef,timecef" 2 "g" "18882-1,6988-0,91-9,92-7,93-5,94-3"
"CID" 43594 "Cefonicid" "Cephalosporins (2nd gen.)" "J01DC06,QJ01DC06" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoni" "cefonicide,cefonicido,cefonicidsalt,cefonicidum,monocef,monocid" 1 "g" "18883-9,25237-9,3444-7,55642-3,95-0,96-8,97-6,98-4"
"CFP" 44187 "Cefoperazone" "Cephalosporins (3rd gen.)" "J01DD12,QJ01DD12,QJ51DD12" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefope,cfp,cfpz,cp,cpz,fop,per" "bioperazone,cefob,cefobid,cefobis,cefoneg,cefoper,cefoperazin,cefoperazine,cefoperazon,cefoperazona,cefoperazonesalt,cefoperazono,cefoperazonum,cefozon,medocef,myticef,pathozone,peracef,tomabef" 4 "g" "100-8,101-6,102-4,18884-7,3445-4,35767-3,35768-1,54166-4,54167-2,54168-0,99-2"
"CSL" "Cefoperazone/sulbactam" "Cephalosporins (3rd gen.)" "J01DD62,QJ01DD62" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "fopsul" "NA" 4 "g" "35768-1,54166-4,54167-2,54168-0"
"CND" 43507 "Ceforanide" "Cephalosporins (2nd gen.)" "J01DC11,QJ01DC11" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefora" "ceforanido,ceforanidum,precef" 4 "g" "103-2,104-0,105-7,106-5,18885-4,55643-1"
"CSE" 9830519 "Cefoselis" "Cephalosporins (4th gen.)" "NA" "cefose" "winsef" "NA"
"CTX" 5742673 "Cefotaxime" "Cephalosporins (3rd gen.)" "J01DD01,QJ01DD01" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefo32,cefota,cfot,cft,cftx,ct,ctx,fot,fot1,tax,taxmen,taxnme,xct" "anticefotaxime,cefotax,cefotaxim,cefotaxima,cefotaximesalt,cefotaximsalt,cefotaximum,cephotaxim,cephotaxime,claforan,kefotex,omnatax,pretor,ralopar,tolycar,tolycor,zariviz" 4 "g" "101479-4,101480-2,107-3,108-1,109-9,110-7,18886-2,25238-7,31138-1,31139-9,3446-2,35769-9,35770-7,35771-5,41671-9,50632-9,52128-6,54191-2,54192-0,54193-8,55189-5,55644-9,6989-8,80961-6"
"CTX-S" "Cefotaxime screening test" "Cephalosporins (3rd gen.)" "NA" "ctx screen" "NA" "NA"
"CTC" 9575353 "Cefotaxime/clavulanic acid" "Cephalosporins (3rd gen.)" "J01DD51,QJ01DD51" "cxcl,taxcla,xctl" "NA" "NA"
"CTS" 9574753 "Cefotaxime/sulbactam" "Cephalosporins (3rd gen.)" "J01DD51,QJ01DD51" "NA" "NA" "54191-2,54192-0,54193-8,55644-9"
"CTT" 53025 "Cefotetan" "Cephalosporins (2nd gen.)" "J01DC05,QJ01DC05" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefote,cftt,cn,cte,ctn,ctt,tans" "apacef,apatef,cefotetanum" 4 "g" "111-5,112-3,113-1,114-9,18887-0,25239-5,3447-0,41672-7,41673-5,41674-3,41729-5,6990-6"
"CTF" 43708 "Cefotiam" "Cephalosporins (2nd gen.)" "J01DC07,QJ01DC07" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoti" "aspil,cefotiamum,ceradon,halospor,pansporin,pansporine,spizef" 1.2 "g" 4 "g" "32374-1,35772-3,35773-1,55645-6,55737-1,55738-9,55739-7,55740-5"
"CHE" 125846 "Cefotiam hexetil" "Cephalosporins (3rd gen.)" "NA" "NA" "taketiam,texodil" "55737-1,55738-9,55739-7,55740-5"
"FOV" 9578573 "Cefovecin" "Cephalosporins (3rd gen.)" "QJ01DD91" "cefove" "cefovecinsalt,convenia" "76147-8,87792-8"
"FOX" 441199 "Cefoxitin" "Cephalosporins (2nd gen.)" "J01DC01,QJ01DC01" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoxi,cfox,cfx,cfxt,cx,fox,fx" "betacef,cefoxil,cefoxitina,cefoxitine,cefoxitinsalt,cefoxitinum,cefoxotin,cenomycin,farmoxin,mefoxin,mefoxithin,mefoxitin,merxin,rephoxitin" 6 "g" "101492-7,115-6,116-4,117-2,118-0,18888-8,25220-5,25240-3,25366-6,3448-8,41675-0,41676-8,41677-6,41730-3,6991-4"
"FOX-S" "Cefoxitin screening test" "Cephalosporins (2nd gen.)" "NA" "cfsc,fox1" "NA" "NA"
"ZOP" 9571080 "Cefozopran" "Cephalosporins (4th gen.)" "J01DE03,QJ01DE03" "cefozo" "firstcin,imidazo" 4 "g" "100045-4,53820-7"
"CFZ" 68597 "Cefpimizole" "Cephalosporins (3rd gen.)" "NA" "cefpim" "ajicef,cefpimizol,cefpimizolesalt,cefpimizolum,renilan" "NA"
"CPM" 636405 "Cefpiramide" "Cephalosporins (3rd gen.)" "J01DD11,QJ01DD11" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefpam" "cefpiramida,cefpiramidesalt,cefpiramido,cefpiramidum,sepatren,suncefal" 2 "g" "NA"
"CPO" 5479539 "Cefpirome" "Cephalosporins (4th gen.)" "J01DE02,QJ01DE02" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "cefpom,cfpr" "broact,cefir,cefpiroma,cefpiromum,cefrom,keiten,romecef" 4 "g" "18889-6,6647-3,6648-1,6649-9,6650-6,6992-2,8274-3,8275-0,8276-8"
"CPD" 6335986 "Cefpodoxime" "Cephalosporins (3rd gen.)" "J01DD13,QJ01DD13" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefpod,cfpd,cfpo,cpd,pod,pod4,px" "cefpodoxima,cefpodoximum,epoxim" 0.4 "g" "119-8,120-6,121-4,122-2,18890-4,25241-1,41678-4,41679-2,41680-0,41731-1,6993-0,90849-1"
"CPX" 6526396 "Cefpodoxime proxetil" "Cephalosporins (3rd gen.)" "NA" "NA" "banan,cefodox,cefoprox,cefpoderm,cefpodoximproxetil,cepodem,doxef,orelox,otreon,podomexef,simplicef,vantin" "NA"
"CDC" "Cefpodoxime/clavulanic acid" "Cephalosporins (3rd gen.)" "J01DD64,QJ01DD64" "cecl,podcla" "NA" 0.4 "g" "NA"
"CPR" 5281006 "Cefprozil" "Cephalosporins (2nd gen.)" "J01DC10,QJ01DC10" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefpro,cpr,cpz,fp" "arzimol,brisoral,cefprozilo,cefprozilum,cronocef,procef,serozil" 1 "g" "123-0,124-8,125-5,126-3,18891-2,6994-8"
"CEQ" 5464355 "Cefquinome" "Cephalosporins (4th gen.)" "QG51AA07,QJ01DE90,QJ51DE90" "cefqui" "cefquinoma,cefquinomum,cobactan,quinolinium" "100046-2,76150-2"
"CRD" 5284529 "Cefroxadine" "Cephalosporins (1st gen.)" "J01DB11,QJ01DB11" "Other beta-lactam antibacterials" "First-generation cephalosporins" "ceftix" "cefroxadin,cefroxadino,cefroxadinum,oraspor" 2.1 "g" "NA"
"CFS" 656575 "Cefsulodin" "Cephalosporins (3rd gen.)" "J01DD03,QJ01DD03" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefsul,cfsl,cfsu" "cefomonil,cefonomil,cefsulodine,cefsulodinhydrate,cefsulodino,cefsulodinum,pseudocef,pseudomonil,pyocefal,sulcephalosporin,takesulin,tilmapor,ulfaret" 4 "g" "127-1,128-9,129-7,130-5,131-3,18892-0,25242-9,55647-2"
"CSU" 68718 "Cefsumide" "Cephalosporins (unclassified gen.)" "NA" "NA" "cefsulmid,cefsumido,cefsumidum" "NA"
"CPT" 56841980 "Ceftaroline" "Cephalosporins (5th gen.)" "J01DI02,QJ01DI02" "ceftar,cfro" "ceftaroine,teflaro,zinforo" "73604-1,73605-8,73626-4,73627-2,73649-6,73650-4,74170-2"
"CPA" "Ceftaroline/avibactam" "Cephalosporins (5th gen.)" "NA" "NA" "NA" "73604-1,73626-4,73649-6"
"CAZ" 5481173 "Ceftazidime" "Cephalosporins (3rd gen.)" "J01DD02,QJ01DD02" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "caz,cef,cefta,ceftaz,cfta,cftz,taz,tz,xtz" "ceftazimide,ceptaz,fortam,fortaz,fortum,glazidim,kefazim,modacin,pentacef,tazicef,tizime" 4 "g" "101481-0,101482-8,101483-6,132-1,133-9,134-7,135-4,18893-8,21151-6,3449-6,35774-9,35775-6,35776-4,42352-5,55648-0,55649-8,55650-6,55651-4,58705-5,6995-5,73603-3,73625-6,73648-8,80960-8,87734-0,90850-9"
"CZA" 90643431 "Ceftazidime/avibactam" "Cephalosporins (3rd gen.)" "J01DD52,QJ01DD52" "cfav" "avycaz,zavicefta" 6 "g" "101483-6,73603-3,73625-6,73648-8,87734-0"
"CCV" 9575352 "Ceftazidime/clavulanic acid" "Cephalosporins (3rd gen.)" "J01DD52,QJ01DD52" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "czcl,tazcla,xtzl" "NA" 6 "g" "NA"
"CEM" 6537431 "Cefteram" "Cephalosporins (3rd gen.)" "J01DD18,QJ01DD18" "cefter" "cefterame,cefteramum,ceftetrame" 0.4 "g" "100047-0,76144-5"
"CPL" 5362114 "Cefteram pivoxil" "Cephalosporins (3rd gen.)" "NA" "NA" "cefterampivoxil,tomiron" "NA"
"CTL" 65755 "Ceftezole" "Cephalosporins (1st gen.)" "J01DB12,QJ01DB12" "Other beta-lactam antibacterials" "First-generation cephalosporins" "ceftez" "alomen,ceftezol,ceftezolesalt,ceftezolo,ceftezolum,celoslin,demethylcefazolin,falomesin" 3 "g" "NA"
"CTB" 5282242 "Ceftibuten" "Cephalosporins (3rd gen.)" "J01DD14,QJ01DD14" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cb,ceftib,cfbu,ctb,tib" "cedax,ceftem,ceftibutene,ceftibuteno,ceftibutenum,ceftibutin,ceprifran,isocef,keimax,seftem" 0.4 "g" "35777-2,35778-0,35779-8,6996-3"
"TIO" 6328657 "Ceftiofur" "Cephalosporins (3rd gen.)" "QJ01DD90,QJ51DD90" "ceftif" "ceftiofurum,excenel,naxcel" "23709-9,35780-6,35781-4,55652-2"
"CZX" 6533629 "Ceftizoxime" "Cephalosporins (3rd gen.)" "J01DD07,QJ01DD07" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "ceftiz,cfzx,ctz,cz,czx,tiz,zox" "cefizox,ceftix,ceftizoxima,ceftizoximesalt,ceftizoximum,eposerin" 4 "g" "136-2,137-0,138-8,139-6,18894-6,20378-6,23622-4,25243-7,3450-4,6997-1"
"CZP" 9578661 "Ceftizoxime alapivoxil" "Cephalosporins (3rd gen.)" "NA" "NA" "NA" "NA"
"BPR" 135413542 "Ceftobiprole" "Cephalosporins (5th gen.)" "NA" "ceftob" "NA" "43269-0,43270-8,43271-6,43272-4,85052-9"
"CFM1" 135413544 "Ceftobiprole medocaril" "Cephalosporins (5th gen.)" "J01DI01,QJ01DI01" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "NA" "zevtera" 1.5 "g" "NA"
"CZT" 86291594 "Ceftolozane/tazobactam" "Cephalosporins (5th gen.)" "J01DI54,QJ01DI54" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "cei" "zerbaxa" 3 "g" "101484-4,73602-5,73624-9,73647-0,87735-7"
"CRO" 5479530 "Ceftriaxone" "Cephalosporins (3rd gen.)" "J01DD04,QJ01DD04" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "axo,cax,ceftri,cftr,cro,ctr,frx,trimen,trinme,tx" "biotrakson,ceftriaxon,ceftriaxona,ceftriaxonum,ceftriazone,rocefin,rocephalin,rocephin,rocephine,rophex" 2 "g" "101485-1,140-4,141-2,142-0,143-8,18895-3,25244-5,25367-4,31140-7,31141-5,3451-2,41681-8,41682-6,41683-4,41732-9,50633-7,55190-3,6998-9,80957-4"
"CEB" "Ceftriaxone/beta-lactamase inhibitor" "Cephalosporins (3rd gen.)" "J01DD63,QJ01DD63" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "NA" "NA" 2 "g" "NA"
"CXM" 5479529 "Cefuroxime" "Cephalosporins (2nd gen.)" "J01DC02,QJ01DC02,QJ51DC02,QS01AA27,S01AA27" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefaxe,cefrox,cefuro,cfrx,cfur,cfx,crm,cxm,fur,rox,xm" "anaptivan,biociclin,biofuroksym,bioxima,cefofix,cefumax,cefurex,cefuril,cefurox,cefuroxim,cefuroxima,cefuroximesalt,cefuroximine,cefuroximo,cefuroximum,cephuroxime,cetroxil,colifossim,curoxim,curoxima,curoxime,froxal,furoxil,kefurox,kesint,ketocef,lifurox,medoxim,sharox,spectrazolr,ultroxim,zinacef,zinnat" 0.5 "g" 3 "g" "101503-1,144-6,145-3,146-1,147-9,18896-1,20460-2,25245-2,3452-0,35782-2,35783-0,51724-3,51774-8,55653-0,55654-8,6999-7,74699-0,80608-3,80617-4"
"CXA" 6321416 "Cefuroxime axetil" "Cephalosporins (2nd gen.)" "NA" "cfax" "bioracef,ceftin,cefurax,cefuroximaxetil,celocid,cepazine,cethixim,cetoxil,coliofossim,curocef,elobact,kalcef,maxitil,medoxm,nivador,novador,novocef,oraxim,zinat,zoref" "NA"
"CFM2" "Cefuroxime/metronidazole" "Other antibacterials" "J01DC52,QJ01DC52" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" 0.5 "g" "NA"
"ZON" 6336505 "Cefuzonam" "Other antibacterials" "NA" "cefuzo" "cefuzoname,cefuzonamum,cefzoname,cosmosin" "NA"
"CED" 38103 "Cephradine" "Cephalosporins (1st gen.)" "NA" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephra,cfra,cfrd" "anspor,cefradin,cefradina,cefradine,cefradinum,cekodin,cephradin,ecosporina,eskacef,infexin,megacef,sefril,velocef,velosef" "168-5,169-3,170-1,171-9,18902-7,55646-4"
"CRB" 20824 "Carbenicillin" "Penicillins,Beta-lactams" "J01CA03,QJ01CA03" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "bar,carb,carben,cb" "anabactyl,carbecin,carbenicilina,carbenicillina,carbenicilline,carbenicillinum,dicarbenicillin,dipenicillin,fugacillin,geopen,gripenin,hyoper,microcillin,piopen,pyocianil,pyoclox,pyopan,pyopen,pyopene" 12 "g" "18873-0,3434-8,41668-5,59-6,60-4,61-2,62-0"
"CRN" 93184 "Carindacillin" "Penicillins,Beta-lactams" "J01CA05,QJ01CA05" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "carindacilina,carindacilline,carindacillinsalt,carindacillinum,geocillin,indanylcarbinicillin,urobac" 4 "g" "NA"
"CAR" 6540466 "Carumonam" "Monobactams,Beta-lactams" "J01DF02,QJ01DF02" "NA" "carumonamum" 2 "g" "51694-8"
"CAS" 2826718 "Caspofungin" "Antifungals" "J02AX04,QJ02AX04" "Antimycotics for systemic use" "Other antimycotics for systemic use" "casp,caspof" "cancidas,caspofungina" 50 "mg" "32378-2,54175-5,54176-3,54185-4,58419-3"
"CAC" 91562 "Cefacetrile" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB10,QJ01DB10,QJ51DB10" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephac" "cefacetril,cefacetrilo,cefacetrilum,celospor,cephacetrile,vetrimast" "55624-1,55625-8,55626-6,55627-4"
"CEC" 51039 "Cefaclor" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC04,QJ01DC04" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "ccl,cec,cefacl,cf,cfac,cfc,cfcl,cfr,fac" "alenfral,alfacet,alfatil,ceclor,cefachlor,cefaclorum,cefeaclor,cephaclor,compound,distaclor,keflor,kefolor,kefral,keftab,keftid,lilly,lopac,panacef,panoral,raniclor" 1 "g" "16564-7,18874-8,21149-0,6986-4,83-6,84-4,85-1,86-9"
"CFR" 47965 "Cefadroxil" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB05,QJ01DB05" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefadr,cfdx,cfr,fad" "bidocel,cefadrops,cefadroxilo,cefadroxilum,cefradroxil,cefzil,cephadroxil,duracef,duricef,kefroxil,sumacef,ultracef" 2 "g" "16565-4,18875-5,55628-2,63-8,64-6,65-3,66-1"
"LEX" 27447 "Cefalexin" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB01,QJ01DB01,QJ51DB01" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cepale,cflx" "adcadina,alcephin,alsporin,ambal,amplex,aristosporin,azabort,bactopenor,beliam,biocef,carnosporin,cefablan,cefacet,cefadal,cefadin,cefadina,cefalekey,cefaleksin,cefalessina,cefalexgobens,cefalexina,cefalexine,cefalexinum,cefalin,cefalival,cefaloto,cefanex,cefaseptin,cefax,ceffanex,cefibacter,ceflax,ceforal,cefovit,celexin,cepastar,cepexin,cephacillin,cephalexine,cephalexinum,cephalobene,cephanasten,cephaxin,cephin,cepol,ceporex,ceporexin,ceporexine,cerexin,cerexins,check,cophalexin,domucef,doriman,durantel,efemida,erocetin,factagard,felexin,fexin,ibilex,ibrexin,inphalex,karilexina,kefalospes,keflet,keflex,kefolan,keforal,kekrinal,kidolex,lafarine,larixin,lenocef,lexibiotico,loisine,lonflex,lopilexin,losporal,madlexin,maksipor,mamalexin,mamlexin,medolexin,medoxine,neokef,neolexina,noveol,novolexin,nufex,optocef,oracef,oriphex,oroxin,ortisporina,ospexin,palitrex,panixine,pectril,prindex,pyassan,rilexine,roceph,rogevil,sanaxin,sartosona,sencephalin,sepexin,servicef,servispor,sialexin,sinthecillin,sintolexyn,sporicef,sporidex,syncl,syncle,synecl,taicelexin,tepaxin,theratrex,tokiolexin,uphalexin,viosporine,voxxim,winlex,zabytrex,zozarine" 2 "g" "NA"
"RID" 5773 "Cefaloridine" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB02,QJ01DB02" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefa,ceplor" "aliporina,ampligram,cefaloridin,cefaloridina,cefaloridinum,cefalorizin,ceflorin,cepaloridin,cepalorin,cephalomycine,cephaloridin,cephaloridine,cephaloridinum,ceporan,ceporin,ceporine,cilifor,deflorin,faredina,floridin,glaxoridin,intrasporin,keflodin,keflordin,kefloridin,kefspor,lloncefal,sasperin,sefacin,verolgin,vioviantine" 3 "g" "NA"
"CEP" 6024 "Cefalotin" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB03,QJ01DB03" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephal,cfal,cflt" "averon,cefalothin,cefalothine,cefalothinsalt,cefalotina,cefalotine,cefalotinsalt,cefalotinum,cemastin,cephalothin,cephalothinsalt,cephalothinum,cephalotin,cephalotinsalt,ceporacin,cepovenin,coaxin,keflin,lospoven,microtin,seffin,synclotin,toricelocin" 4 "g" "NA"
"MAN" 456255 "Cefamandole" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC03,QJ01DC03" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefama,cfam,cfmn" "cefadole,cefamandol,cefamandolum,cephadole,kefamandol,kefdole,mancef" 6 "g" "18876-3,3441-3,41669-3,55634-0,55635-7,55636-5,55637-3,67-9,68-7,69-5,70-3"
"HAP" 30699 "Cefapirin" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB08,QG51AA05,QJ01DB08,QJ51DB08" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephap" "ambrocef,brisfirina,brisporin,bristocef,cefadyl,cefalak,cefaloject,cefapirina,cefapirine,cefapirinsalt,cefapirinum,cefaprin,cefatrex,cefatrexyl,cephapirin,cephapirine,cephapirinsalt,cephatrexil,cephatrexyl,metricure" 4 "g" "NA"
"CTZ" 6410758 "Cefatrizine" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB07,QJ01DB07" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefatr" "bricef,cefathiamidine,cefatrix,cefatrizino,cefatrizinum,cephatriazine,cepticol,cetrazil,latocef,orosporina,orotric,seapuron,trizina" 1 "g" "18877-1,55639-9,71-1,72-9,73-7,74-5"
"CZD" 71736 "Cefazedone" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB06,QJ01DB06" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefaze" "cefazedon,cefazedona,cefazedonesalt,cefazedonum,refosporen,refosporene,refosporin,refosporinsalt" 3 "g" "NA"
"CZO" 33255 "Cefazolin" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB04,QJ01DB04,QJ51DB04" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cefazo,cfz,cfzl,cz,czol,faz,kz" "ancef,atirin,biazolina,cefabiozim,cefacidal,cefalomicina,cefamedin,cefamezin,cefazil,cefazina,cefazolina,cefazoline,cefazolinsalt,cefazolinum,cephamezine,cephazolidin,cephazolin,cephazoline,elzogram,firmacef,gramaxin,kefzol,lampocef,liviclina,neofazol,oprea,recef,totacef,zolicef,zolisint" 3 "g" "16566-2,18878-9,25235-3,3442-1,3443-9,41670-1,75-2,76-0,77-8,78-6,80962-4,85422-4"
"CFB" 127527 "Cefbuperazone" "Other" "J01DC13,QJ01DC13" "cefbup" "cefbuperazona,cefbuperazonesalt,cefbuperazonum,cefbuperzaone,cerbuperazone,keiperazon,tomiporan" 2 "g" "NA"
"CCP" 6436055 "Cefcapene" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD17,QJ01DD17" "cefcap" "flomox" 0.45 "g" "100044-7,76143-7"
"CCX" 5282438 "Cefcapene pivoxil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "cefcamate,flumax" "NA"
"CDR" 6915944 "Cefdinir" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD15,QJ01DD15" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cd,cdn,cdr,cefdin,cfd,din" "cefdinirum,cefdinyl,cefdirnir,ceftinex,cefzon,omnicef" 0.6 "g" "23636-4,23637-2,35757-4,35758-2"
"DIT" 9870843 "Cefditoren" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD16,QJ01DD16" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cdn,cefdit" "cefditoreno,spectracef" 0.4 "g" "35759-0,35760-8,35761-6,35762-4"
"DIX" 6437877 "Cefditoren pivoxil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "cefditorin,meiact,pivaloyloxymethyl" "NA"
"FEP" 5479537 "Cefepime" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "J01DE01,QJ01DE01" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "cefep4,cefepi,cfep,cfpi,cpe,cpm,fep,pm,xpm" "anticefepime,axepim,cefepima,cefepimum,maxipime,pyrrolidinium,renapime" 4 "g" "101502-3,18879-7,31142-3,31143-1,35763-2,38363-8,42350-9,42351-7,42353-3,50631-1,58412-8,6643-1,6644-9,6645-7,6646-5,6987-2,8272-7,8273-5"
"CFA" "Cefepime/amikacin" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "J01DE51,QJ01DE51" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CPC" 9567559 "Cefepime/clavulanic acid" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "J01DE51,QJ01DE51" "cefcla,cicl,xpml" "NA" "NA"
"FPE" 23653540 "Cefepime/enmetazobactam" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FNC" "Cefepime/nacubactam" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FTA" "Cefepime/taniborbactam" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FPT" 9567558 "Cefepime/tazobactam" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"FPZ" "Cefepime/zidebactam" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DE51,QJ01DE51" "NA" "NA" "NA"
"CAT" 5487888 "Cefetamet" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD10,QJ01DD10" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefeta,cefmtm" "cefetametum,deacetoxycefotaxime,epocelin" 1 "g" "32377-4,35764-0,35765-7,55640-7"
"CPI" 5486182 "Cefetamet pivoxil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "cefetametpivoxil,cefyl,globocef" "NA"
"CCL" 71719688 "Cefetecol" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "NA" "cefcatacol" "NA" "NA"
"CZL" 193956 "Cefetrizole" "Cephalosporins,Beta-lactams" "NA" "NA" "cefetrizolum" "NA"
"FDC" 77843966 "Cefiderocol" "Cephalosporins,Beta-lactams" "J01DI04,QJ01DI04" "NA" "fetcroja" 6 "g" "95767-0,99280-0,99503-5"
"CFM" 5362065 "Cefixime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD08,QJ01DD08" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefixi,cfe,cfix,cfxm,dcfm,fix,ix" "cefixim,cefixima,cefiximum,cefixoral,cefspan,cephoral,citropen,denvar,necopen,oraken,oroken,suprax,tricef,unixime" 0.4 "g" "16567-0,18880-5,25236-1,35766-5,79-4,80-2,81-0,82-8"
"CEO" "Cefixime/ornidazole" "Other" "J01DD58,QJ01DD58" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CMX" 9570757 "Cefmenoxime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD05,QJ01DD05,QS01AA31,QS02AA18,S01AA31,S02AA18" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefmen" "bestron,cefmenoxima,cefmenoximum,tacef" 2 "g" "32375-8,54174-8,54203-5,55641-5"
"CMZ" 42008 "Cefmetazole" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC09,QJ01DC09" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefmet" "cefmetazol,cefmetazolo,cefmetazolum,cefmetazon,metafar,zefazone" 4 "g" "11575-8,18881-3,25222-1,87-7,88-5,89-3,90-1"
"CNX" 71141 "Cefminox" "Other" "J01DC12,QJ01DC12" "cefmin" "alteporina,cefminoxhydrate,cefminoxum,meicelin,tencef" 4 "g" "54908-9"
"DIZ" 5361871 "Cefodizime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD09,QJ01DD09" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "NA" "cefodizima,cefodizimum,cefodizme,diezime,kenicef,modivid,neucef,timecef" 2 "g" "18882-1,6988-0,91-9,92-7,93-5,94-3"
"CID" 43594 "Cefonicid" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC06,QJ01DC06" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoni" "cefonicide,cefonicido,cefonicidsalt,cefonicidum,monocef,monocid" 1 "g" "18883-9,25237-9,3444-7,55642-3,95-0,96-8,97-6,98-4"
"CFP" 44187 "Cefoperazone" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD12,QJ01DD12,QJ51DD12" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefope,cfp,cfpz,cp,cpz,fop,per" "bioperazone,cefob,cefobid,cefobis,cefoneg,cefoper,cefoperazin,cefoperazine,cefoperazon,cefoperazona,cefoperazonesalt,cefoperazono,cefoperazonum,cefozon,medocef,myticef,pathozone,peracef,tomabef" 4 "g" "100-8,101-6,102-4,18884-7,3445-4,35767-3,35768-1,54166-4,54167-2,54168-0,99-2"
"CSL" "Cefoperazone/sulbactam" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DD62,QJ01DD62" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "fopsul" "NA" 4 "g" "35768-1,54166-4,54167-2,54168-0"
"CND" 43507 "Ceforanide" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC11,QJ01DC11" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefora" "ceforanido,ceforanidum,precef" 4 "g" "103-2,104-0,105-7,106-5,18885-4,55643-1"
"CSE" 9830519 "Cefoselis" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "NA" "cefose" "winsef" "NA"
"CTX" 5742673 "Cefotaxime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD01,QJ01DD01" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefo32,cefota,cfot,cft,cftx,ct,ctx,fot,fot1,tax,taxmen,taxnme,xct" "anticefotaxime,cefotax,cefotaxim,cefotaxima,cefotaximesalt,cefotaximsalt,cefotaximum,cephotaxim,cephotaxime,claforan,kefotex,omnatax,pretor,ralopar,tolycar,tolycor,zariviz" 4 "g" "101479-4,101480-2,107-3,108-1,109-9,110-7,18886-2,25238-7,31138-1,31139-9,3446-2,35769-9,35770-7,35771-5,41671-9,50632-9,52128-6,54191-2,54192-0,54193-8,55189-5,55644-9,6989-8,80961-6"
"CTX-S" "Cefotaxime screening test" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "ctx screen" "NA" "NA"
"CTC" 9575353 "Cefotaxime/clavulanic acid" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD51,QJ01DD51" "cxcl,taxcla,xctl" "NA" "NA"
"CTS" 9574753 "Cefotaxime/sulbactam" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DD51,QJ01DD51" "NA" "NA" "54191-2,54192-0,54193-8,55644-9"
"CTT" 53025 "Cefotetan" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC05,QJ01DC05" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefote,cftt,cn,cte,ctn,ctt,tans" "apacef,apatef,cefotetanum" 4 "g" "111-5,112-3,113-1,114-9,18887-0,25239-5,3447-0,41672-7,41673-5,41674-3,41729-5,6990-6"
"CTF" 43708 "Cefotiam" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC07,QJ01DC07" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoti" "aspil,cefotiamum,ceradon,halospor,pansporin,pansporine,spizef" 1.2 "g" 4 "g" "32374-1,35772-3,35773-1,55645-6,55737-1,55738-9,55739-7,55740-5"
"CHE" 125846 "Cefotiam hexetil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "taketiam,texodil" "55737-1,55738-9,55739-7,55740-5"
"FOV" 9578573 "Cefovecin" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "QJ01DD91" "cefove" "cefovecinsalt,convenia" "76147-8,87792-8"
"FOX" 441199 "Cefoxitin" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC01,QJ01DC01" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefoxi,cfox,cfx,cfxt,cx,fox,fx" "betacef,cefoxil,cefoxitina,cefoxitine,cefoxitinsalt,cefoxitinum,cefoxotin,cenomycin,farmoxin,mefoxin,mefoxithin,mefoxitin,merxin,rephoxitin" 6 "g" "101492-7,115-6,116-4,117-2,118-0,18888-8,25220-5,25240-3,25366-6,3448-8,41675-0,41676-8,41677-6,41730-3,6991-4"
"FOX-S" "Cefoxitin screening test" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "NA" "cfsc,fox1" "NA" "NA"
"ZOP" 9571080 "Cefozopran" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "J01DE03,QJ01DE03" "cefozo" "firstcin,imidazo" 4 "g" "100045-4,53820-7"
"CFZ" 68597 "Cefpimizole" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "cefpim" "ajicef,cefpimizol,cefpimizolesalt,cefpimizolum,renilan" "NA"
"CPM" 636405 "Cefpiramide" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD11,QJ01DD11" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefpam" "cefpiramida,cefpiramidesalt,cefpiramido,cefpiramidum,sepatren,suncefal" 2 "g" "NA"
"CPO" 5479539 "Cefpirome" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "J01DE02,QJ01DE02" "Other beta-lactam antibacterials" "Fourth-generation cephalosporins" "cefpom,cfpr" "broact,cefir,cefpiroma,cefpiromum,cefrom,keiten,romecef" 4 "g" "18889-6,6647-3,6648-1,6649-9,6650-6,6992-2,8274-3,8275-0,8276-8"
"CPD" 6335986 "Cefpodoxime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD13,QJ01DD13" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefpod,cfpd,cfpo,cpd,pod,pod4,px" "cefpodoxima,cefpodoximum,epoxim" 0.4 "g" "119-8,120-6,121-4,122-2,18890-4,25241-1,41678-4,41679-2,41680-0,41731-1,6993-0,90849-1"
"CPX" 6526396 "Cefpodoxime proxetil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "banan,cefodox,cefoprox,cefpoderm,cefpodoximproxetil,cepodem,doxef,orelox,otreon,podomexef,simplicef,vantin" "NA"
"CDC" "Cefpodoxime/clavulanic acid" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD64,QJ01DD64" "cecl,podcla" "NA" 0.4 "g" "NA"
"CPR" 5281006 "Cefprozil" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC10,QJ01DC10" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefpro,cpr,cpz,fp" "arzimol,brisoral,cefprozilo,cefprozilum,cronocef,procef,serozil" 1 "g" "123-0,124-8,125-5,126-3,18891-2,6994-8"
"CEQ" 5464355 "Cefquinome" "Cephalosporins (4th gen.),Cephalosporins,Beta-lactams" "QG51AA07,QJ01DE90,QJ51DE90" "cefqui" "cefquinoma,cefquinomum,cobactan,quinolinium" "100046-2,76150-2"
"CRD" 5284529 "Cefroxadine" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB11,QJ01DB11" "Other beta-lactam antibacterials" "First-generation cephalosporins" "ceftix" "cefroxadin,cefroxadino,cefroxadinum,oraspor" 2.1 "g" "NA"
"CFS" 656575 "Cefsulodin" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD03,QJ01DD03" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cefsul,cfsl,cfsu" "cefomonil,cefonomil,cefsulodine,cefsulodinhydrate,cefsulodino,cefsulodinum,pseudocef,pseudomonil,pyocefal,sulcephalosporin,takesulin,tilmapor,ulfaret" 4 "g" "127-1,128-9,129-7,130-5,131-3,18892-0,25242-9,55647-2"
"CSU" 68718 "Cefsumide" "Cephalosporins,Beta-lactams" "NA" "NA" "cefsulmid,cefsumido,cefsumidum" "NA"
"CPT" 56841980 "Ceftaroline" "Cephalosporins (5th gen.),Cephalosporins,Beta-lactams" "J01DI02,QJ01DI02" "ceftar,cfro" "ceftaroine,teflaro,zinforo" "73604-1,73605-8,73626-4,73627-2,73649-6,73650-4,74170-2"
"CPA" "Ceftaroline/avibactam" "Cephalosporins (5th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "NA" "NA" "NA" "73604-1,73626-4,73649-6"
"CAZ" 5481173 "Ceftazidime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD02,QJ01DD02" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "caz,cef,cefta,ceftaz,cfta,cftz,taz,tz,xtz" "ceftazimide,ceptaz,fortam,fortaz,fortum,glazidim,kefazim,modacin,pentacef,tazicef,tizime" 4 "g" "101481-0,101482-8,101483-6,132-1,133-9,134-7,135-4,18893-8,21151-6,3449-6,35774-9,35775-6,35776-4,42352-5,55648-0,55649-8,55650-6,55651-4,58705-5,6995-5,73603-3,73625-6,73648-8,80960-8,87734-0,90850-9"
"CZA" 90643431 "Ceftazidime/avibactam" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DD52,QJ01DD52" "cfav" "avycaz,zavicefta" 6 "g" "101483-6,73603-3,73625-6,73648-8,87734-0"
"CCV" 9575352 "Ceftazidime/clavulanic acid" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD52,QJ01DD52" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "czcl,tazcla,xtzl" "NA" 6 "g" "NA"
"CEM" 6537431 "Cefteram" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD18,QJ01DD18" "cefter" "cefterame,cefteramum,ceftetrame" 0.4 "g" "100047-0,76144-5"
"CPL" 5362114 "Cefteram pivoxil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "cefterampivoxil,tomiron" "NA"
"CTL" 65755 "Ceftezole" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "J01DB12,QJ01DB12" "Other beta-lactam antibacterials" "First-generation cephalosporins" "ceftez" "alomen,ceftezol,ceftezolesalt,ceftezolo,ceftezolum,celoslin,demethylcefazolin,falomesin" 3 "g" "NA"
"CTB" 5282242 "Ceftibuten" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD14,QJ01DD14" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cb,ceftib,cfbu,ctb,tib" "cedax,ceftem,ceftibutene,ceftibuteno,ceftibutenum,ceftibutin,ceprifran,isocef,keimax,seftem" 0.4 "g" "35777-2,35778-0,35779-8,6996-3"
"TIO" 6328657 "Ceftiofur" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "QJ01DD90,QJ51DD90" "ceftif" "ceftiofurum,excenel,naxcel" "23709-9,35780-6,35781-4,55652-2"
"CZX" 6533629 "Ceftizoxime" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD07,QJ01DD07" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "ceftiz,cfzx,ctz,cz,czx,tiz,zox" "cefizox,ceftix,ceftizoxima,ceftizoximesalt,ceftizoximum,eposerin" 4 "g" "136-2,137-0,138-8,139-6,18894-6,20378-6,23622-4,25243-7,3450-4,6997-1"
"CZP" 9578661 "Ceftizoxime alapivoxil" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "NA" "NA" "NA" "NA"
"BPR" 135413542 "Ceftobiprole" "Cephalosporins (5th gen.),Cephalosporins,Beta-lactams" "NA" "ceftob" "NA" "43269-0,43270-8,43271-6,43272-4,85052-9"
"CFM1" 135413544 "Ceftobiprole medocaril" "Cephalosporins (5th gen.),Cephalosporins,Beta-lactams" "J01DI01,QJ01DI01" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "NA" "zevtera" 1.5 "g" "NA"
"CZT" 86291594 "Ceftolozane/tazobactam" "Cephalosporins (5th gen.),Cephalosporins,Beta-lactams,Beta-lactamase inhibitors" "J01DI54,QJ01DI54" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "cei" "zerbaxa" 3 "g" "101484-4,73602-5,73624-9,73647-0,87735-7"
"CRO" 5479530 "Ceftriaxone" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD04,QJ01DD04" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "axo,cax,ceftri,cftr,cro,ctr,frx,trimen,trinme,tx" "biotrakson,ceftriaxon,ceftriaxona,ceftriaxonum,ceftriazone,rocefin,rocephalin,rocephin,rocephine,rophex" 2 "g" "101485-1,140-4,141-2,142-0,143-8,18895-3,25244-5,25367-4,31140-7,31141-5,3451-2,41681-8,41682-6,41683-4,41732-9,50633-7,55190-3,6998-9,80957-4"
"CEB" "Ceftriaxone/beta-lactamase inhibitor" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD63,QJ01DD63" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "NA" "NA" 2 "g" "NA"
"CXM" 5479529 "Cefuroxime" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC02,QJ01DC02,QJ51DC02,QS01AA27,S01AA27" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cefaxe,cefrox,cefuro,cfrx,cfur,cfx,crm,cxm,fur,rox,xm" "anaptivan,biociclin,biofuroksym,bioxima,cefofix,cefumax,cefurex,cefuril,cefurox,cefuroxim,cefuroxima,cefuroximesalt,cefuroximine,cefuroximo,cefuroximum,cephuroxime,cetroxil,colifossim,curoxim,curoxima,curoxime,froxal,furoxil,kefurox,kesint,ketocef,lifurox,medoxim,sharox,spectrazolr,ultroxim,zinacef,zinnat" 0.5 "g" 3 "g" "101503-1,144-6,145-3,146-1,147-9,18896-1,20460-2,25245-2,3452-0,35782-2,35783-0,51724-3,51774-8,55653-0,55654-8,6999-7,74699-0,80608-3,80617-4"
"CXA" 6321416 "Cefuroxime axetil" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "NA" "cfax" "bioracef,ceftin,cefurax,cefuroximaxetil,celocid,cepazine,cethixim,cetoxil,coliofossim,curocef,elobact,kalcef,maxitil,medoxm,nivador,novador,novocef,oraxim,zinat,zoref" "NA"
"CFM2" "Cefuroxime/metronidazole" "Other" "J01DC52,QJ01DC52" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" 0.5 "g" "NA"
"ZON" 6336505 "Cefuzonam" "Other" "NA" "cefuzo" "cefuzoname,cefuzonamum,cefzoname,cosmosin" "NA"
"CED" 38103 "Cephradine" "Cephalosporins (1st gen.),Cephalosporins,Beta-lactams" "NA" "Other beta-lactam antibacterials" "First-generation cephalosporins" "cephra,cfra,cfrd" "anspor,cefradin,cefradina,cefradine,cefradinum,cekodin,cephradin,ecosporina,eskacef,infexin,megacef,sefril,velocef,velosef" "168-5,169-3,170-1,171-9,18902-7,55646-4"
"CTO" 71402 "Cetocycline" "Tetracyclines" "NA" "NA" "cetocyline,cetotetrine,chelocardin" "NA"
"CHL" 5959 "Chloramphenicol" "Phenicols" "D06AX02,D10AF03,G01AA05,J01BA01,QD06AX02,QD10AF03,QG01AA05,QJ01BA01,QJ51BA01,QS01AA01,QS02AA01,QS03AA08,S01AA01,S02AA01,S03AA08" "Amphenicols" "Amphenicols" "c,chl,chlo,chlora,cl" "alficetyn,ambofen,amphicol,amseclor,anacetin,aquamycetin,austracil,austracol,biocetin,biophenicol,catilan,chemicetin,chemicetina,chlomin,chlomycol,chloramex,chloramfenikol,chloramficin,chloramfilin,chloramphenicole,chloramphenicolum,chloramsaar,chlorasol,chlorbiotic,chloricol,chlornitromycin,chloroamphenicol,chlorocaps,chlorocid,chlorocide,chlorocin,chlorocol,chlorofair,chloromax,chloromycetin,chloromycetny,chloromyxin,chloronitrin,chloroptic,chlorovules,cidocetine,ciplamycetin,cloramfen,cloramfenicol,cloramfenicolo,cloramficin,cloramicol,cloramidina,cloranfenicol,cloroamfenicolo,clorocyn,cloromisan,clorosintex,comycetin,cylphenicol,desphen,detreomycin,detreomycine,dextramycin,dextromycetin,doctamicina,econochlor,embacetin,emetren,enteromycetin,erbaplast,ertilen,farmicetina,globenicol,glorous,gloveticol,halcetin,halomycetin,hortfenicol,intramycetin,isicetin,ismicetina,isophenicol,juvamycetin,kamaver,kemicetina,kemicetine,kloramfenikol,klorita,laevomycetinum,leukamycin,leukomyan,leukomycin,levocin,levomicetina,levomitsetin,levomycetin,levoplast,levosin,levovetin,loromisan,loromisin,mastiphen,maybridge,mediamycetine,medichol,micloretin,micochlorine,micoclorina,microcetina,mychel,mycinol,myclocin,mycochlorin,novochlorocap,novomycetin,novophenicol,ocuphenicol,oftalent,oleomycetin,opclor,opelor,ophthochlor,ophthocort,ophtochlor,optomycin,otachron,otophen,pantovernil,paraxin,pentamycetin,petnamycetin,quemicetina,rivomycin,romphenil,ronphenil,septicol,sificetina,sintomicetin,sintomicetina,soluthor,stanomycetin,synthomycetin,synthomycetine,synthomycine,syntomycin,tevcocin,tevcosin,tifomycin,tifomycine,tiromycetin,treomicetina,tyfomycine,unimycetin,veticol,viceton" 3 "g" 3 "g" "15101-9,16603-3,16604-1,172-7,173-5,174-3,175-0,18903-5,25247-8,29214-4,29346-4,29347-2,3455-3,7001-1"
"CTE" 54675777 "Chlortetracycline" "Tetracyclines" "A01AB21,D06AA02,J01AA03,QA01AB21,QD06AA02,QG51AA08,QJ01AA03,QJ51AA03,QS01AA02,S01AA02" "Tetracyclines" "Tetracyclines" "chltet" "acronize,alexomycin,aueromycin,aureocarmyl,aureociclina,aureocina,aureocycline,aureomycin,aureomykoin,aurofac,auxeomycin,biomitsin,biomycin,chlormax,chlorotetracycline,chlortetracyclinum,chrysomykine,clorocipan,clortetraciclina,clortetrin,declomycin,declostatin,deganol,demeclor,demeplus,demetraciclina,demetraclin,detracin,detravis,diuciclin,duomycin,elkamicina,flamycin,isphamycin,ledermicina,ledermycin,ledermycine,mexocine,novotriclina,pennchlor,perciclina,periciclina,sumaclina,uromycin,veraciclina" 1 "g" "176-8,177-6,178-4,179-2,18904-3,55655-5,87600-3"
"CIC" 19003 "Ciclacillin" "Beta-lactams/penicillins" "NA" "cyclac" "bastcillin,calthor,ciclacilina,ciclacilline,ciclacillinum,ciclacillum,citosarin,cyclacillin,cyclapen,noblicil,orfilina,peamezin,syngacillin,ultracillin,vastcillin,vipicil,wyvital" "NA"
"CIX" 47472 "Ciclopirox" "Antifungals/antimycotics" "D01AE14,G01AX12,QD01AE14,QG01AX12" "Antifungals for topical use" "Other antifungals for topical use" "cipx" "NA" "NA"
"CIC" 19003 "Ciclacillin" "Penicillins,Beta-lactams" "NA" "cyclac" "bastcillin,calthor,ciclacilina,ciclacilline,ciclacillinum,ciclacillum,citosarin,cyclacillin,cyclapen,noblicil,orfilina,peamezin,syngacillin,ultracillin,vastcillin,vipicil,wyvital" "NA"
"CIX" 47472 "Ciclopirox" "Antifungals" "D01AE14,G01AX12,QD01AE14,QG01AX12" "Antifungals for topical use" "Other antifungals for topical use" "cipx" "NA" "NA"
"CIN" 2762 "Cinoxacin" "Quinolones" "J01MB06,QJ01MB06" "Quinolone antibacterials" "Other quinolones" "cino,cinoxa,cnox" "cinobac,cinobactin,cinoxacine,cinoxacino,cinoxacinum,clinoxacin,noxigram,uronorm" 1 "g" "180-0,181-8,182-6,183-4,18905-0,55656-3"
"CIP" 2764 "Ciprofloxacin" "Fluoroquinolones" "J01MA02,QJ01MA02,QS01AE03,QS02AA15,QS03AA07,S01AE03,S02AA15,S03AA07" "Quinolone antibacterials" "Fluoroquinolones" "ci,cip,cipr,ciprof,cp" "alcipro,bacquinor,baflox,belmacina,bernoflox,catex,cenin,ceprimax,cetraxal,ciflan,ciflosin,cifloxin,cilab,cilox,ciloxan,cipad,ciplus,ciprecu,ciprenit,ciprine,ciprinol,cipro,ciprobay,ciprocinal,ciprocinol,ciprodar,ciproflox,ciprofloxacina,ciprofloxacine,ciprofloxacino,ciprofloxacinum,ciprofur,ciprogis,ciproktan,ciprolin,ciprolon,cipromycin,cipronex,ciprooxacin,cipropol,ciproquinol,ciprowin,ciproxan,ciproxin,ciproxina,ciproxine,ciriax,citeral,citopcin,cixan,corsacin,cunesin,cycin,cyprobay,cyproxan,disfabac,felixene,fimoflox,flociprin,floxacipron,flunas,globuce,inkamil,ipiflox,italnik,keefloxin,linhaliq,loxacid,loxan,lypro,megaflox,microgan,nixin,novidat,novoquin,ofitin,oftacilox,ophaflox,otiprio,phaproxin,piprol,plenolyt,probiox,proflaxin,proksi,proquin,proxacin,quinoflox,quinolid,quintor,quipro,rancif,renator,roflazin,roxytal,sepcen,septicide,septocipro,siprogut,sophixin,spitacin,strox,suiflox,superocin,supraflox,uritent,utiminx,velmonit,zumaflox" 1 "g" 0.8 "g" "101500-7,14031-9,14032-7,14058-2,14059-0,184-2,185-9,186-7,187-5,18906-8,20377-8,23621-6,25180-1,25181-9,25188-4,25189-2,25248-6,34636-1,3484-3,42644-5,55194-5,7002-9"
"CIM" "Ciprofloxacin/metronidazole" "Fluoroquinolones" "J01RA10,QJ01RA10" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CIO" "Ciprofloxacin/ornidazole" "Fluoroquinolones" "J01RA12,QJ01RA12" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CIT" "Ciprofloxacin/tinidazole" "Fluoroquinolones" "J01RA11,QJ01RA11" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CLR" 84029 "Clarithromycin" "Macrolides/lincosamides" "J01FA09,QJ01FA09" "Macrolides, lincosamides and streptogramins" "Macrolides" "ch,cla,clar,claryt,clm,clr" "abbotic,abboticine,astromen,biaxin,bicrolid,bristamycin,clacee,clacid,clacine,clambiotic,clarem,claribid,claricide,claridar,claripen,clarith,clarithromycine,clarithromycinum,claritromicina,clarosip,clathromycin,crixan,cyllid,cyllind,eratrex,esinol,fromilid,gallimycin,helas,heliclar,klabax,klacid,klaciped,klaricid,klarid,klarin,kofron,mabicrol,macladin,maclar,mavid,meberyt,pediamycin,qidmycin,veclam,wyamycin,zeclar" 0.5 "g" 1 "g" "100048-8,16619-9,16620-7,188-3,189-1,18907-6,190-9,191-7,20375-2,23619-0,25190-0,25191-8,25192-6,25253-6,34638-7,43987-7,43990-1,43991-9,7003-7,80559-8,89485-7"
"CLA1" 5280980 "Clavulanic acid" "Other antibacterials" "NA" "NA" "amonate,clavulanate,clavulanateacid,clavulansaeure,clavulansaure,clavulox,serdaxin" "NA"
"CLX" 60063 "Clinafloxacin" "Fluoroquinolones" "NA" "clinaf" "NA" "32376-6,33284-1,35785-5,35786-3,7004-5"
"CLI" 446598 "Clindamycin" "Macrolides/lincosamides" "D10AF01,G01AA10,J01FF01,QD10AF01,QG01AA10,QJ01FF01" "Macrolides, lincosamides and streptogramins" "Lincosamides" "cc,cd,cli,clin,clin32,clinda,cm,da" "antirobe,chlolincocin,chlorlincocin,cleocin,clindamicina,clindamycine,clindamycinum,clinimycin,clinsol,clintabs,dalacine,klimicin,klindan,sobelin" 1.2 "g" 1.8 "g" "16621-5,16622-3,18908-4,192-5,193-3,194-1,195-8,25249-4,3486-8,42720-3,55657-1,55658-9,55659-7,55660-5,61188-9,7005-2"
"CLI-S" "Clindamycin inducible screening test" "Macrolides/lincosamides" "NA" "clin inducible,clinda inducible,clindamycin inducible" "NA" "NA"
"CIP" 2764 "Ciprofloxacin" "Fluoroquinolones,Quinolones" "J01MA02,QJ01MA02,QS01AE03,QS02AA15,QS03AA07,S01AE03,S02AA15,S03AA07" "Quinolone antibacterials" "Fluoroquinolones" "ci,cip,cipr,ciprof,cp" "alcipro,bacquinor,baflox,belmacina,bernoflox,catex,cenin,ceprimax,cetraxal,ciflan,ciflosin,cifloxin,cilab,cilox,ciloxan,cipad,ciplus,ciprecu,ciprenit,ciprine,ciprinol,cipro,ciprobay,ciprocinal,ciprocinol,ciprodar,ciproflox,ciprofloxacina,ciprofloxacine,ciprofloxacino,ciprofloxacinum,ciprofur,ciprogis,ciproktan,ciprolin,ciprolon,cipromycin,cipronex,ciprooxacin,cipropol,ciproquinol,ciprowin,ciproxan,ciproxin,ciproxina,ciproxine,ciriax,citeral,citopcin,cixan,corsacin,cunesin,cycin,cyprobay,cyproxan,disfabac,felixene,fimoflox,flociprin,floxacipron,flunas,globuce,inkamil,ipiflox,italnik,keefloxin,linhaliq,loxacid,loxan,lypro,megaflox,microgan,nixin,novidat,novoquin,ofitin,oftacilox,ophaflox,otiprio,phaproxin,piprol,plenolyt,probiox,proflaxin,proksi,proquin,proxacin,quinoflox,quinolid,quintor,quipro,rancif,renator,roflazin,roxytal,sepcen,septicide,septocipro,siprogut,sophixin,spitacin,strox,suiflox,superocin,supraflox,uritent,utiminx,velmonit,zumaflox" 1 "g" 0.8 "g" "101500-7,14031-9,14032-7,14058-2,14059-0,184-2,185-9,186-7,187-5,18906-8,20377-8,23621-6,25180-1,25181-9,25188-4,25189-2,25248-6,34636-1,3484-3,42644-5,55194-5,7002-9"
"CIM" "Ciprofloxacin/metronidazole" "Fluoroquinolones,Quinolones" "J01RA10,QJ01RA10" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CIO" "Ciprofloxacin/ornidazole" "Fluoroquinolones,Quinolones" "J01RA12,QJ01RA12" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CIT" "Ciprofloxacin/tinidazole" "Fluoroquinolones,Quinolones" "J01RA11,QJ01RA11" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"CLR" 84029 "Clarithromycin" "Macrolides" "J01FA09,QJ01FA09" "Macrolides, lincosamides and streptogramins" "Macrolides" "ch,cla,clar,claryt,clm,clr" "abbotic,abboticine,astromen,biaxin,bicrolid,bristamycin,clacee,clacid,clacine,clambiotic,clarem,claribid,claricide,claridar,claripen,clarith,clarithromycine,clarithromycinum,claritromicina,clarosip,clathromycin,crixan,cyllid,cyllind,eratrex,esinol,fromilid,gallimycin,helas,heliclar,klabax,klacid,klaciped,klaricid,klarid,klarin,kofron,mabicrol,macladin,maclar,mavid,meberyt,pediamycin,qidmycin,veclam,wyamycin,zeclar" 0.5 "g" 1 "g" "100048-8,16619-9,16620-7,188-3,189-1,18907-6,190-9,191-7,20375-2,23619-0,25190-0,25191-8,25192-6,25253-6,34638-7,43987-7,43990-1,43991-9,7003-7,80559-8,89485-7"
"CLA1" 5280980 "Clavulanic acid" "Other" "NA" "NA" "amonate,clavulanate,clavulanateacid,clavulansaeure,clavulansaure,clavulox,serdaxin" "NA"
"CLX" 60063 "Clinafloxacin" "Fluoroquinolones,Quinolones" "NA" "clinaf" "NA" "32376-6,33284-1,35785-5,35786-3,7004-5"
"CLI" 446598 "Clindamycin" "Lincosamides" "D10AF01,G01AA10,J01FF01,QD10AF01,QG01AA10,QJ01FF01" "Macrolides, lincosamides and streptogramins" "Lincosamides" "cc,cd,cli,clin,clin32,clinda,cm,da" "antirobe,chlolincocin,chlorlincocin,cleocin,clindamicina,clindamycine,clindamycinum,clinimycin,clinsol,clintabs,dalacine,klimicin,klindan,sobelin" 1.2 "g" 1.8 "g" "16621-5,16622-3,18908-4,192-5,193-3,194-1,195-8,25249-4,3486-8,42720-3,55657-1,55658-9,55659-7,55660-5,61188-9,7005-2"
"CLI-S" "Clindamycin inducible screening test" "Lincosamides,Macrolides" "NA" "clin inducible,clinda inducible,clindamycin inducible" "NA" "NA"
"CLF" 2794 "Clofazimine" "Antimycobacterials" "J04BA01,QJ04BA01" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "clof,clofam" "chlofazimine,clofazimina,clofaziminum,colfazimine,lampren,lamprene,phenazine,riminophenazine" 0.1 "g" "16623-1,20376-0,23620-8,23627-3,43986-9,43988-5,43989-3,55661-3,55662-1,96108-6"
"CLF1" 2799 "Clofoctol" "Other antibacterials" "J01XX03,QJ01XX03" "Other antibacterials" "Other antibacterials" "NA" "clofoctolo,clofoctolum,gramplus,octofene,phenol" "NA"
"CLM" 71807 "Clometocillin" "Beta-lactams/penicillins" "J01CE07,QJ01CE07" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "chlomethocillin,clometacillin,clomethacillin,clomethocillin,clometocilina,clometocilline,clometocillinsalt,clometocillinum,penicilline,rixapen" 1 "g" "NA"
"CLF1" 2799 "Clofoctol" "Other" "J01XX03,QJ01XX03" "Other antibacterials" "Other antibacterials" "NA" "clofoctolo,clofoctolum,gramplus,octofene,phenol" "NA"
"CLM" 71807 "Clometocillin" "Penicillins,Beta-lactams" "J01CE07,QJ01CE07" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "chlomethocillin,clometacillin,clomethacillin,clomethocillin,clometocilina,clometocilline,clometocillinsalt,clometocillinum,penicilline,rixapen" 1 "g" "NA"
"CLM1" 54680675 "Clomocycline" "Tetracyclines" "J01AA11,QJ01AA11" "Tetracyclines" "Tetracyclines" "NA" "clomociclina,clomocyclinum,megaclor" 1 "g" "NA"
"CTR" 2812 "Clotrimazole" "Antifungals/antimycotics" "A01AB18,D01AC01,G01AF02,QA01AB18,QD01AC01,QG01AF02,QJ02AB90" "clot" "alevazol,bisphenyl,canesten,canestene,canestine,canifug,chlotrimazole,clomatin,clotrimaderm,clotrimazol,clotrimazolum,coltrimazole,cutistad,diphenylmethane,empecid,esparol,femmesil,footlogix,fortinia,gynix,imidazole,jidesheng,klotrimazole,lakesia,lombazol,lombazole,lombazolum,lotrimax,lotrimin,monobaycuten,mycelax,mycelex,mycofug,mycosporin,mykosporin,nalbix,otomax,pedesil,pedisafe,ringworm,stiemazol,tibatin,trimysten,trivagizole" "10653-4,10654-2,18909-2,54177-1,55663-9"
"CLO" 6098 "Cloxacillin" "Beta-lactams/penicillins" "J01CF02,QJ01CF02,QJ51CF02,QS01AA90" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "clox,cloxac" "ankerbin,austrastaph,biocloxin,brispen,chloroxacillin,ciclex,clocil,clossacillina,cloxacilina,cloxacillinanhydrous,cloxacilline,cloxacillinsalt,cloxacillinum,cloxapen,constaphyl,dariclox,dichlorstapenor,diclocil,dicloxacillinhydrate,diflor,digloxilline,dynapen,ekvacillin,gelstaph,novapen,noxaben,orbenin,pathocil,stampen,staphybiotic,syntarpen,syntarpensalt,tegopen" 2 "g" 2 "g" "16628-0,18910-0,196-6,197-4,198-2,199-0,25250-2,55664-7"
"CTR" 2812 "Clotrimazole" "Antifungals" "A01AB18,D01AC01,G01AF02,QA01AB18,QD01AC01,QG01AF02,QJ02AB90" "clot" "alevazol,bisphenyl,canesten,canestene,canestine,canifug,chlotrimazole,clomatin,clotrimaderm,clotrimazol,clotrimazolum,coltrimazole,cutistad,diphenylmethane,empecid,esparol,femmesil,footlogix,fortinia,gynix,imidazole,jidesheng,klotrimazole,lakesia,lombazol,lombazole,lombazolum,lotrimax,lotrimin,monobaycuten,mycelax,mycelex,mycofug,mycosporin,mykosporin,nalbix,otomax,pedesil,pedisafe,ringworm,stiemazol,tibatin,trimysten,trivagizole" "10653-4,10654-2,18909-2,54177-1,55663-9"
"CLO" 6098 "Cloxacillin" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "J01CF02,QJ01CF02,QJ51CF02,QS01AA90" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "clox,cloxac" "ankerbin,austrastaph,biocloxin,brispen,chloroxacillin,ciclex,clocil,clossacillina,cloxacilina,cloxacillinanhydrous,cloxacilline,cloxacillinsalt,cloxacillinum,cloxapen,constaphyl,dariclox,dichlorstapenor,diclocil,dicloxacillinhydrate,diflor,digloxilline,dynapen,ekvacillin,gelstaph,novapen,noxaben,orbenin,pathocil,stampen,staphybiotic,syntarpen,syntarpensalt,tegopen" 2 "g" 2 "g" "16628-0,18910-0,196-6,197-4,198-2,199-0,25250-2,55664-7"
"COL" 5311054 "Colistin" "Polymyxins" "A07AA10,J01XB01,QA07AA10,QJ01XB01,QJ51XB01" "Other antibacterials" "Polymyxins" "cl,coli,colist,cs,cst,ct" "colimycin,colisticin,colisticina,colistina,colistine,colistinum,colobreathe,colomycin,kangdisu,kolimitsin,kolimycin,promixin,sogecoli,totazina" 9 "MU" 9 "MU" "16645-4,18912-6,204-8,205-5,206-3,207-1,29493-4,33333-6"
"COP" "Colistin/polysorbate" "Other antibacterials" "NA" "NA" "NA" "NA"
"COP" "Colistin/polysorbate" "Other" "NA" "NA" "NA" "NA"
"CYC" 6234 "Cycloserine" "Oxazolidinones" "J04AB01,QJ04AB01" "Drugs for treatment of tuberculosis" "Antibiotics" "cycl,cyclos" "cicloserina,closina,cyclorin,cycloserin,cycloserinum,farmiserina,levcicloserina,levcycloserine,levcycloserinum,micoserina,miroserina,miroseryn,novoserin,oxamicina,oxamycin,seromycin,tebemicina,wasserina" 0.75 "g" "16702-3,18914-2,212-1,213-9,214-7,215-4,23608-3,25207-2,25208-0,25209-8,25251-0,3519-6,55667-0"
"DAL" 23724878 "Dalbavancin" "Glycopeptides" "J01XA04,QJ01XA04" "Other antibacterials" "Glycopeptide antibacterials" "dalb,dalbav" "dalbavancina,dalvance,xydalba,zeven" 1.5 "g" "41688-3,41689-1,41690-9,41734-5"
"DAN" 71335 "Danofloxacin" "Fluoroquinolones" "QJ01MA92" "danofl" "advocin,danofloxacine,danofloxacino,danofloxacinum" "73601-7,73623-1,73646-2"
"DPS" 2955 "Dapsone" "Other antibacterials" "D10AX05,J04BA02,QD10AX05,QJ04BA02" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "dao" "aczone,atrisone,avlosulfon,avlosulfone,avlosulphone,benzenamide,benzenamine,bissulfone,bissulphone,croysulfone,croysulphone,dapson,dapsona,dapsonum,daspone,diaphenylsulfon,diaphenylsulfone,diaphenylsulphon,diaphenylsulphone,diphenasone,diphone,disulfone,disulone,disulphone,dubronax,dumitone,eporal,medapsol,novophone,servidapson,sulfadione,sulfona,sulfonyldianiline,sulphadione,sulphonyldianiline,tarimyl,udolac,undolac" 50 "mg" "51698-9,9747-7"
"DAP" 16134395 "Daptomycin" "Other antibacterials" "J01XX09,QJ01XX09" "Other antibacterials" "Other antibacterials" "dap,dapt,dapt25,dapt50,daptom" "cidecin,cubicin,dapcin,daptomicina,daptomycine,daptomycinum,deptomycin" 0.28 "g" "35787-1,35788-9,35789-7,41691-7"
"DFX" 487101 "Delafloxacin" "Fluoroquinolones" "J01MA23,QJ01MA23" "NA" "baxdela,delafloxacinum,quofenix" 0.9 "g" 0.6 "g" "88885-9,90447-4,93790-4"
"DAL" 23724878 "Dalbavancin" "Lipoglycopeptides,Glycopeptides" "J01XA04,QJ01XA04" "Other antibacterials" "Glycopeptide antibacterials" "dalb,dalbav" "dalbavancina,dalvance,xydalba,zeven" 1.5 "g" "41688-3,41689-1,41690-9,41734-5"
"DAN" 71335 "Danofloxacin" "Fluoroquinolones,Quinolones" "QJ01MA92" "danofl" "advocin,danofloxacine,danofloxacino,danofloxacinum" "73601-7,73623-1,73646-2"
"DPS" 2955 "Dapsone" "Other" "D10AX05,J04BA02,QD10AX05,QJ04BA02" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "dao" "aczone,atrisone,avlosulfon,avlosulfone,avlosulphone,benzenamide,benzenamine,bissulfone,bissulphone,croysulfone,croysulphone,dapson,dapsona,dapsonum,daspone,diaphenylsulfon,diaphenylsulfone,diaphenylsulphon,diaphenylsulphone,diphenasone,diphone,disulfone,disulone,disulphone,dubronax,dumitone,eporal,medapsol,novophone,servidapson,sulfadione,sulfona,sulfonyldianiline,sulphadione,sulphonyldianiline,tarimyl,udolac,undolac" 50 "mg" "51698-9,9747-7"
"DAP" 16134395 "Daptomycin" "Other" "J01XX09,QJ01XX09" "Other antibacterials" "Other antibacterials" "dap,dapt,dapt25,dapt50,daptom" "cidecin,cubicin,dapcin,daptomicina,daptomycine,daptomycinum,deptomycin" 0.28 "g" "35787-1,35788-9,35789-7,41691-7"
"DFX" 487101 "Delafloxacin" "Fluoroquinolones,Quinolones" "J01MA23,QJ01MA23" "NA" "baxdela,delafloxacinum,quofenix" 0.9 "g" 0.6 "g" "88885-9,90447-4,93790-4"
"DLM" 6480466 "Delamanid" "Antimycobacterials" "J04AK06,QJ04AK06" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "dela" "deltyba" 0.2 "g" "93851-4,96109-4"
"DEM" 54680690 "Demeclocycline" "Tetracyclines" "D06AA01,J01AA01,QD06AA01,QJ01AA01" "Tetracyclines" "Tetracyclines" "demecy" "demeclociclina,demeclocyclinum" 0.6 "g" "10982-7,18915-9,216-2,217-0,218-8,219-6,29494-2,7006-0"
"DKB" 470999 "Dibekacin" "Aminoglycosides" "J01GB09,QJ01GB09,QS01AA29,S01AA29" "Aminoglycoside antibacterials" "Other aminoglycosides" "dibeka" "debecacin,dibekacina,dibekacine,dibekacinum,kappati,panamicin" 0.14 "g" "55669-6,55670-4,55671-2,55672-0"
"DIC" 18381 "Dicloxacillin" "Beta-lactams/penicillins" "J01CF01,QJ01CF01,QJ51CF01" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "dicl,diclox" "dichloroxacillin,diclossacillina,dicloxaciclin,dicloxacilin,dicloxacilina,dicloxacillina,dicloxacilline,dicloxacillinum,dicloxacycline,maclicine" 2 "g" 2 "g" "10984-3,16769-2,18916-7,220-4,221-2,222-0,223-8,25252-8,32380-8,55668-8"
"DIF" 56206 "Difloxacin" "Fluoroquinolones" "QJ01MA94" "diflox" "dicural,difloxacine,pulsaflox" "35790-5,35791-3,35792-1"
"DIR" 6473883 "Dirithromycin" "Macrolides/lincosamides" "J01FA13,QJ01FA13" "Macrolides, lincosamides and streptogramins" "Macrolides" "dirith" "dirithromycine,dirithromycinum,diritromicina,divitross,dynabac,noriclan,valodin" 0.5 "g" "35793-9,35794-7,35795-4,7007-8"
"DOR" 73303 "Doripenem" "Carbapenems" "J01DH04,QJ01DH04" "Other beta-lactam antibacterials" "Carbapenems" "dori,doripe" "doribax,dripenem,finibax" 1.5 "g" "56031-8,58711-3,60535-2,72893-1"
"DIC" 18381 "Dicloxacillin" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "J01CF01,QJ01CF01,QJ51CF01" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "dicl,diclox" "dichloroxacillin,diclossacillina,dicloxaciclin,dicloxacilin,dicloxacilina,dicloxacillina,dicloxacilline,dicloxacillinum,dicloxacycline,maclicine" 2 "g" 2 "g" "10984-3,16769-2,18916-7,220-4,221-2,222-0,223-8,25252-8,32380-8,55668-8"
"DIF" 56206 "Difloxacin" "Fluoroquinolones,Quinolones" "QJ01MA94" "diflox" "dicural,difloxacine,pulsaflox" "35790-5,35791-3,35792-1"
"DIR" 6473883 "Dirithromycin" "Macrolides" "J01FA13,QJ01FA13" "Macrolides, lincosamides and streptogramins" "Macrolides" "dirith" "dirithromycine,dirithromycinum,diritromicina,divitross,dynabac,noriclan,valodin" 0.5 "g" "35793-9,35794-7,35795-4,7007-8"
"DOR" 73303 "Doripenem" "Carbapenems,Beta-lactams" "J01DH04,QJ01DH04" "Other beta-lactam antibacterials" "Carbapenems" "dori,doripe" "doribax,dripenem,finibax" 1.5 "g" "56031-8,58711-3,60535-2,72893-1"
"DOX" 54671203 "Doxycycline" "Tetracyclines" "A01AB22,J01AA02,QA01AB22,QJ01AA02" "Tetracyclines" "Tetracyclines" "dox,doxy,doxycy" "abbocin,alamycin,aquacycline,biosolvomycin,biotet,bisolvomycin,chrysocin,dalimycin,dalinmycin,deoxymykoin,dossiciclina,doxiciclina,doxirobe,doxitard,doxivetin,doxycen,doxychel,doxycin,doxycyclin,doxycyclinum,doxylin,doxysol,doxytetracycline,elinton,engemycin,hydrocyclin,imperacin,intaloxin,investin,jenacyclin,liquachel,liviatin,macodyn,mepatar,microdox,mondoxyne,monodox,morgidox,ocudox,okebo,oracea,otetryn,oxacycline,oxamycen,oxatet,oxlopar,oxybiocycline,oxydon,oxyject,oxymykoin,oxysteclin,oxytet,oxytetral,oxytetrin,oxytracyl,oxyvet,stecsolin,supracyclin,terraject,terramycin,toxinal,unimycin,vendarcin,vibramycin,vibramycine,vivox,zenavod" 0.1 "g" 0.1 "g" "10986-8,18917-5,20379-4,21250-6,224-6,225-3,226-1,227-9,23623-2,25223-9,26902-7,7008-6"
"ECO" 3198 "Econazole" "Antifungals/antimycotics" "D01AC03,G01AF05,QD01AC03,QG01AF05" "Antifungals for topical use" "Imidazole and triazole derivatives" "econ" "bromazil,chloramizol,clinafarm,deccosil,deccozil,econazolum,ecostatin,ekonazole,enilconazol,enilconazole,eniloconazol,fecundal,florasan,freshgard,freshguard,fungaflor,fungazil,imaverol,imaversol,imazalil,magnate,spectazole" "25595-0,25637-0,54178-9,55673-8"
"ECO" 3198 "Econazole" "Antifungals" "D01AC03,G01AF05,QD01AC03,QG01AF05" "Antifungals for topical use" "Imidazole and triazole derivatives" "econ" "bromazil,chloramizol,clinafarm,deccosil,deccozil,econazolum,ecostatin,ekonazole,enilconazol,enilconazole,eniloconazol,fecundal,florasan,freshgard,freshguard,fungaflor,fungazil,imaverol,imaversol,imazalil,magnate,spectazole" "25595-0,25637-0,54178-9,55673-8"
"EFF" "Efflux" "Other" "NA" "effflux pump" "NA" "NA"
"ENX" 3229 "Enoxacin" "Fluoroquinolones" "J01MA04,QJ01MA04" "Quinolone antibacterials" "Fluoroquinolones" "enox,enoxa" "abenox,almitil,bactidan,bactidron,comprecin,enofloxacine,enoksetin,enoram,enoxacina,enoxacine,enoxacino,enoxacinum,enoxen,enoxin,enoxor,flumark,penetrex" 0.8 "g" "16816-1,18918-3,228-7,229-5,230-3,231-1,3590-7,41692-5"
"ENR" 71188 "Enrofloxacin" "Fluoroquinolones" "QJ01MA90" "enrofl" "baytril,enroflox,enrofloxacine,enrofloxacino,enrofloxacinum,enroquin,enrosite,enroxil,quellaxcin,tenotryl,zobuxa" "23712-3,35796-2,35797-0,35798-8"
"ENX" 3229 "Enoxacin" "Fluoroquinolones,Quinolones" "J01MA04,QJ01MA04" "Quinolone antibacterials" "Fluoroquinolones" "enox,enoxa" "abenox,almitil,bactidan,bactidron,comprecin,enofloxacine,enoksetin,enoram,enoxacina,enoxacine,enoxacino,enoxacinum,enoxen,enoxin,enoxor,flumark,penetrex" 0.8 "g" "16816-1,18918-3,228-7,229-5,230-3,231-1,3590-7,41692-5"
"ENR" 71188 "Enrofloxacin" "Fluoroquinolones,Quinolones" "QJ01MA90" "enrofl" "baytril,enroflox,enrofloxacine,enrofloxacino,enrofloxacinum,enroquin,enrosite,enroxil,quellaxcin,tenotryl,zobuxa" "23712-3,35796-2,35797-0,35798-8"
"ENV" 135565326 "Enviomycin" "Antimycobacterials" "J04AB06,QJ04AB06" "tuberactinomycin" "enviomicina,enviomycina,enviomycine,enviomycinum,tuberactin" 1 "g" "NA"
"EPE" "Eperozolid" "Other antibacterials" "NA" "NA" "NA" "NA"
"EPC" 71392 "Epicillin" "Beta-lactams/penicillins" "J01CA07,QJ01CA07" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "dexacillin,dihydroampicillin,epicilina,epicilline,epicillinum,spectacillin" 2 "g" 2 "g" "NA"
"EPP" 68916 "Epiroprim" "Other antibacterials" "NA" "NA" "epiroprima,epiroprime,epiroprimum" "NA"
"EPE" "Eperozolid" "Other" "NA" "NA" "NA" "NA"
"EPC" 71392 "Epicillin" "Penicillins,Beta-lactams" "J01CA07,QJ01CA07" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "dexacillin,dihydroampicillin,epicilina,epicilline,epicillinum,spectacillin" 2 "g" 2 "g" "NA"
"EPP" 68916 "Epiroprim" "Other" "NA" "NA" "epiroprima,epiroprime,epiroprimum" "NA"
"ERV" 54726192 "Eravacycline" "Tetracyclines" "J01AA13,QJ01AA13" "Tetracyclines" "Tetracyclines" "erav" "xerava" 0.14 "g" "100049-6,85423-2,93767-2"
"ETP" 150610 "Ertapenem" "Carbapenems" "J01DH03,QJ01DH03" "Other beta-lactam antibacterials" "Carbapenems" "erta,ertape,etp" "ertapenemsalt,invanz" 1 "g" "101486-9,35799-6,35800-2,35801-0,35802-8"
"ERY" 12560 "Erythromycin" "Macrolides/lincosamides" "D10AF02,J01FA01,QD10AF02,QJ01FA01,QJ51FA01,QS01AA17,S01AA17" "Macrolides, lincosamides and streptogramins" "Macrolides" "e,em,ery,ery32,eryt,eryth" "abboticin,abomacetin,acneryne,acnesol,aknemycin,aknin,benzamycin,derimer,deripil,dotycin,dumotrycin,emgel,emuvin,emycin,endoeritrin,erecin,erisone,eritomicina,eritrocina,eritromicina,ermycin,eryacne,eryacnen,erycen,erycette,erycinum,eryderm,erydermer,erygel,eryhexal,erymax,erymed,erysafe,erytab,erythro,erythroderm,erythrogran,erythroguent,erythromast,erythromid,erythromycine,erythromycinum,erytop,erytrociclin,ilocaps,ilosone,iloticina,ilotycin,inderm,latotryd,lederpax,mephamycin,mercina,oftamolets,pantoderm,pantodrin,pantomicina,pharyngocin,primacine,propiocine,proterytrin,retcin,robimycin,sansac,spotex,staticin,stiemicyn,stiemycin,tiprocin,torlamicina,wemid" 2 "g" 1 "g" "100050-4,11576-6,12298-6,16829-4,16830-2,18919-1,18920-9,20380-2,232-9,233-7,234-5,235-2,236-0,23633-1,237-8,238-6,239-4,25224-7,25275-9,3597-2,7009-4"
"ETP" 150610 "Ertapenem" "Carbapenems,Beta-lactams" "J01DH03,QJ01DH03" "Other beta-lactam antibacterials" "Carbapenems" "erta,ertape,etp" "ertapenemsalt,invanz" 1 "g" "101486-9,35799-6,35800-2,35801-0,35802-8"
"ERY" 12560 "Erythromycin" "Macrolides" "D10AF02,J01FA01,QD10AF02,QJ01FA01,QJ51FA01,QS01AA17,S01AA17" "Macrolides, lincosamides and streptogramins" "Macrolides" "e,em,ery,ery32,eryt,eryth" "abboticin,abomacetin,acneryne,acnesol,aknemycin,aknin,benzamycin,derimer,deripil,dotycin,dumotrycin,emgel,emuvin,emycin,endoeritrin,erecin,erisone,eritomicina,eritrocina,eritromicina,ermycin,eryacne,eryacnen,erycen,erycette,erycinum,eryderm,erydermer,erygel,eryhexal,erymax,erymed,erysafe,erytab,erythro,erythroderm,erythrogran,erythroguent,erythromast,erythromid,erythromycine,erythromycinum,erytop,erytrociclin,ilocaps,ilosone,iloticina,ilotycin,inderm,latotryd,lederpax,mephamycin,mercina,oftamolets,pantoderm,pantodrin,pantomicina,pharyngocin,primacine,propiocine,proterytrin,retcin,robimycin,sansac,spotex,staticin,stiemicyn,stiemycin,tiprocin,torlamicina,wemid" 2 "g" 1 "g" "100050-4,11576-6,12298-6,16829-4,16830-2,18919-1,18920-9,20380-2,232-9,233-7,234-5,235-2,236-0,23633-1,237-8,238-6,239-4,25224-7,25275-9,3597-2,7009-4"
"ETH" 14052 "Ethambutol" "Antimycobacterials" "J04AK02,QJ04AK02" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "emb,etha,ethamb" "aethambutolum,dadibutol,diambutol,etambutol,etambutolo,ethambutolum,myambutol,purderal,servambutol,tibutol" 1.2 "g" 1.2 "g" "100051-2,16841-9,18921-7,20381-0,23625-7,240-2,241-0,242-8,243-6,25187-6,25194-2,25195-9,25230-4,25404-5,3607-9,42645-2,42646-0,55154-9,55674-6,56025-0,7010-2,89491-5"
"ETI" 456476 "Ethambutol/isoniazid" "Antimycobacterials" "J04AM03,QJ04AM03" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"ETI1" 2761171 "Ethionamide" "Antimycobacterials" "J04AD03,QJ04AD03" "Drugs for treatment of tuberculosis" "Thiocarbamide derivatives" "ethi,ethion" "aethionamidum,aetina,aetiva,amidazin,amidazine,atina,ethimide,ethina,ethinamide,ethionamidum,ethioniamide,ethylisothiamide,ethyonomide,etimid,etiocidan,etionamid,etionamida,etionamide,etioniamid,etionid,etionizin,etionizina,etionizine,fatoliamid,iridocin,iridozin,isothin,isotiamida,itiocide,nicotion,nisotin,nizotin,rigenicid,sertinon,teberus,thianid,thianide,thioamide,thiodine,thiomid,thioniden,tianid,tiomid,trecator,trekator,trescatyl,trescazide,tubenamide,tubermin,tuberoid,tuberoson" 0.75 "g" "16099-4,16845-0,18922-5,20382-8,23617-4,25183-5,25196-7,25198-3,25231-2,41693-3,42647-8,42648-6,7011-0,96110-2"
"ETO" 6034 "Ethopabate" "Other antibacterials" "QP51AX17" "NA" "ethopabat" "NA"
"EXE" "Exebacase" "NA" "NA" "NA" "NA"
"FAR" 65894 "Faropenem" "Other antibacterials" "J01DI03,QJ01DI03" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "farope" "farom,faropenemhydrate,faropenemsalt,fropenem,fropenum,furopenem" 0.75 "g" "73600-9,73622-3,73645-4"
"FDX" 10034073 "Fidaxomicin" "Other antibacterials" "A07AA12,QA07AA12" "NA" "dificid,dificlir,difimicin,fidaxomicina,lipiarmicin,lipiarmycin,lipiarrmycin" 0.4 "g" "73599-3,73621-5,73644-7"
"FIN" 11567473 "Finafloxacin" "Fluoroquinolones" "NA" "NA" "xtoro" "73598-5,73620-7,73643-9"
"FLA" 46783781 "Flavomycin" "Other antibacterials" "NA" "flavom" "bambermicina,bambermycine,bambermycinum,flavofosfolipol,flavophospholipol,gainpro,menomycin" "NA"
"FLE" 3357 "Fleroxacin" "Fluoroquinolones" "J01MA08,QJ01MA08" "Quinolone antibacterials" "Fluoroquinolones" "fler,flerox" "fleroxacine,fleroxacino,fleroxacinum,fleroxicin,megalocin,megalone,megalosin,quinodis" 0.4 "g" 0.4 "g" "25411-0,32372-5,35806-9,7012-8"
"FLO" 65864 "Flomoxef" "Other antibacterials" "J01DC14,QJ01DC14" "flomox" "flomoxefo,flomoxefsalt,flomoxefum,flumarin" 2 "g" "100052-0,53822-3"
"ETO" 6034 "Ethopabate" "Other" "QP51AX17" "NA" "ethopabat" "NA"
"EXE" "Exebacase" "Other" "NA" "NA" "NA" "NA"
"FAR" 65894 "Faropenem" "Other" "J01DI03,QJ01DI03" "Other beta-lactam antibacterials" "Other cephalosporins and penems" "farope" "farom,faropenemhydrate,faropenemsalt,fropenem,fropenum,furopenem" 0.75 "g" "73600-9,73622-3,73645-4"
"FDX" 10034073 "Fidaxomicin" "Other" "A07AA12,QA07AA12" "NA" "dificid,dificlir,difimicin,fidaxomicina,lipiarmicin,lipiarmycin,lipiarrmycin" 0.4 "g" "73599-3,73621-5,73644-7"
"FIN" 11567473 "Finafloxacin" "Fluoroquinolones,Quinolones" "NA" "NA" "xtoro" "73598-5,73620-7,73643-9"
"FLA" 46783781 "Flavomycin" "Other" "NA" "flavom" "bambermicina,bambermycine,bambermycinum,flavofosfolipol,flavophospholipol,gainpro,menomycin" "NA"
"FLE" 3357 "Fleroxacin" "Fluoroquinolones,Quinolones" "J01MA08,QJ01MA08" "Quinolone antibacterials" "Fluoroquinolones" "fler,flerox" "fleroxacine,fleroxacino,fleroxacinum,fleroxicin,megalocin,megalone,megalosin,quinodis" 0.4 "g" 0.4 "g" "25411-0,32372-5,35806-9,7012-8"
"FLO" 65864 "Flomoxef" "Other" "J01DC14,QJ01DC14" "flomox" "flomoxefo,flomoxefsalt,flomoxefum,flumarin" 2 "g" "100052-0,53822-3"
"FLR" 114811 "Florfenicol" "Phenicols" "QJ01BA90,QJ51BA90" "florfe" "aquafen,descocin,dexawin,efnicol,fricol,hyrazin,loncor,macphenicol,masatirin,neomyson,norfenicol,nuflor,racephenicol,rincrol,thiamcol,urfamicina,urophenyl" "23740-4,35807-7,35808-5,87599-7"
"FLC" 21319 "Flucloxacillin" "Beta-lactams/penicillins" "J01CF05,QJ01CF05,QJ51CF05" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "clox,fluclo,flux" "bactopen,cloxacap,cloxacillinhydrate,cloxypen,floxacillin,floxacillinanhydrous,floxapen,floxapensalt,fluclomix,flucloxacilina,flucloxacilline,flucloxacillinum,flucloxin,fluorochloroxacillin,galfloxin,latocillin,orbeninhydrate,rimaflox,staphobristol,zoxin" 2 "g" 2 "g" "NA"
"FLU" 3365 "Fluconazole" "Antifungals/antimycotics" "D01AC15,J02AC01,QD01AC15,QJ02AC01" "Antimycotics for systemic use" "Triazole derivatives" "fluc,flucon,fluz,flz" "alflucoz,alkanazole,baten,biocanol,biozole,biozolene,canzol,cryptal,diflazon,diflucan,dimycon,elazor,flucazol,fluconazoli,fluconazolum,flucoral,flucostat,flukezol,flunazol,flunizol,fluzon,forcan,fuconal,fungata,loitin,mutum,oxifugol,pritenzol,syscan,trican,triconal,triflucan,zemyc,zoltec,zonal" 0.2 "g" 0.2 "g" "10987-6,16870-8,18924-1,248-5,249-3,250-1,251-9,25255-1,7013-6,80530-9"
"FCT" 3366 "Flucytosine" "Antifungals/antimycotics" "D01AE21,J02AX01,QD01AE21,QJ02AX01" "Antifungals for topical use" "Other antifungals for topical use" "5flc,fcu,flucyt,fluo,fluy" "alcobon,ancoban,ancobon,ancotil,ancotyl,flourocytosine,flucitosina,flucytosin,flucytosinum,flucytosone,fluocytosine,fluorcytosine,fluorocytosine" 10 "g" 10 "g" "NA"
"FLC" 21319 "Flucloxacillin" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "J01CF05,QJ01CF05,QJ51CF05" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "clox,fluclo,flux" "bactopen,cloxacap,cloxacillinhydrate,cloxypen,floxacillin,floxacillinanhydrous,floxapen,floxapensalt,fluclomix,flucloxacilina,flucloxacilline,flucloxacillinum,flucloxin,fluorochloroxacillin,galfloxin,latocillin,orbeninhydrate,rimaflox,staphobristol,zoxin" 2 "g" 2 "g" "NA"
"FLU" 3365 "Fluconazole" "Antifungals" "D01AC15,J02AC01,QD01AC15,QJ02AC01" "Antimycotics for systemic use" "Triazole derivatives" "fluc,flucon,fluz,flz" "alflucoz,alkanazole,baten,biocanol,biozole,biozolene,canzol,cryptal,diflazon,diflucan,dimycon,elazor,flucazol,fluconazoli,fluconazolum,flucoral,flucostat,flukezol,flunazol,flunizol,fluzon,forcan,fuconal,fungata,loitin,mutum,oxifugol,pritenzol,syscan,trican,triconal,triflucan,zemyc,zoltec,zonal" 0.2 "g" 0.2 "g" "10987-6,16870-8,18924-1,248-5,249-3,250-1,251-9,25255-1,7013-6,80530-9"
"FCT" 3366 "Flucytosine" "Antifungals" "D01AE21,J02AX01,QD01AE21,QJ02AX01" "Antifungals for topical use" "Other antifungals for topical use" "5flc,fcu,flucyt,fluo,fluy" "alcobon,ancoban,ancobon,ancotil,ancotyl,flourocytosine,flucitosina,flucytosin,flucytosinum,flucytosone,fluocytosine,fluorcytosine,fluorocytosine" 10 "g" 10 "g" "NA"
"FLM" 3374 "Flumequine" "Quinolones" "J01MB07,QJ01MB07" "Quinolone antibacterials" "Other quinolones" "flumeq" "apurone,fantacin,flumequina,flumequino,flumequinum,flumigal,flumiquil,flumisol,flumix,imequyl" 1.2 "g" "55675-3,55676-1,55677-9,55678-7"
"FLR1" 71260 "Flurithromycin" "Macrolides/lincosamides" "J01FA14,QJ01FA14" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "abbot,beritromicina,berythromycin,berythromycine,berythromycinum,flurithromycine,flurithromycinum,fluritromicina,fluritromycinum,flurizic,mizar" 0.75 "g" "NA"
"FFL" 214356 "Fosfluconazole" "Antifungals/antimycotics" "NA" "NA" "fosfluconazol,procif,prodif" "NA"
"FLR1" 71260 "Flurithromycin" "Macrolides" "J01FA14,QJ01FA14" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "abbot,beritromicina,berythromycin,berythromycine,berythromycinum,flurithromycine,flurithromycinum,fluritromicina,fluritromycinum,flurizic,mizar" 0.75 "g" "NA"
"FFL" 214356 "Fosfluconazole" "Antifungals" "NA" "NA" "fosfluconazol,procif,prodif" "NA"
"FOS" 446987 "Fosfomycin" "Phosphonics" "J01XX01,QJ01XX01,QS02AA17,S02AA17" "Other antibacterials" "Other antibacterials" "ff,fm,fo,fof,fos,fosf,fosfom,fosmyc" "fosfocina,fosfomicin,fosfomicina,fosfomycine,fosfomycinum,fosfonomycin,infectophos,phosphonemycin,phosphonomycin,veramina" 3 "g" 8 "g" "25596-8,25653-7,35809-3,35810-1"
"FMD" 572 "Fosmidomycin" "Other antibacterials" "NA" "NA" "fosmidomicina,fosmidomycina,fosmidomycine,fosmidomycinsalt,fosmidomycinum" "NA"
"FMD" 572 "Fosmidomycin" "Other" "NA" "NA" "fosmidomicina,fosmidomycina,fosmidomycine,fosmidomycinsalt,fosmidomycinum" "NA"
"FRM" 8378 "Framycetin" "Aminoglycosides" "D09AA01,QD09AA01,QJ01GB91,QR01AX08,QS01AA07,R01AX08,S01AA07" "fram,framyc" "actilin,actiline,antibiotique,bycomycin,enterfram,fradiomycin,fradiomycinum,framicetina,framidal,framycetine,framycetinum,framycin,framygen,francetin,jernadex,myacyne,mycerin,mycifradin,neobrettin,neolate,neomas,neomcin,neomicina,neomin,neomycine,neomycinum,nivemycin,soframycin,soframycine" "18926-6,257-6,258-4,259-2,260-0,55679-5"
"FUR" 6870646 "Furazidin" "Other antibacterials" "J01XE03,QJ01XE03" "Other antibacterials" "Nitrofuran derivatives" "NA" "akritoin,furagin,furaginum,furamag,furazidine,hydantoin" 0.3 "g" "NA"
"FRZ" 5323714 "Furazolidone" "Other antibacterials" "G01AX06,QG01AX06,QJ01XE90" "furazo" "bifuron,corizium,coryzium,diafuron,enterotoxon,furall,furanzolidone,furaxon,furaxone,furazolidine,furazolidon,furazolidona,furazolidonum,furazolum,furidon,furmethoxadone,furovag,furoxal,furoxane,furoxon,furoxone,furozolidine,giardil,giarlam,medaron,neftin,nicolen,nifulidone,nifuran,nifurazolidone,nifurazolidonum,nitrofuradoxon,nitrofurazolidone,nitrofurazolidonum,nitrofuroxon,optazol,ortazol,puradin,roptazol,sclaventerol,tikofuran,topazone,trichofuron,tricofuron,tricoron,trifurox,viofuragyn" "69574-2,87794-4"
"FUS" 3000226 "Fusidic acid" "Other antibacterials" "D06AX01,D09AA02,J01XC01,QD06AX01,QD09AA02,QJ01XC01,QS01AA13,S01AA13" "Other antibacterials" "Steroid antibacterials" "fa,fusaci,fusi" "flucidin,fucidate,fucidina,fucidine,fucithalmic,fusidate,fusidicacid,fusidin,fusidine,taksta" 1.5 "g" 1.5 "g" "NA"
"GAM" 59364992 "Gamithromycin" "Macrolides/lincosamides" "QJ01FA95" "NA" "zactran" "100054-6,88376-9,88378-5"
"GRN" 124093 "Garenoxacin" "Fluoroquinolones" "J01MA19,QJ01MA19" "gareno" "ganefloxacin,garenfloxacin" 0.4 "g" "35811-9,35812-7,35813-5"
"GAT" 5379 "Gatifloxacin" "Fluoroquinolones" "J01MA16,QJ01MA16,QS01AE06,S01AE06" "Quinolone antibacterials" "Fluoroquinolones" "gati,gatifl" "acorafloxacin,avarofloxacin,balofloxacin,balofox,bazucin,bilimin,bonoq,gaity,gatiflo,gatifloxacine,gatifloxcin,gatilox,gatiquin,gatispan,kinome,tequin,tymer,zymar,zymaxid,zymer" 0.4 "g" 0.4 "g" "31036-7,31038-3,31040-9,31042-5,41494-6"
"GEM" 9571107 "Gemifloxacin" "Fluoroquinolones" "J01MA15,QJ01MA15" "Quinolone antibacterials" "Fluoroquinolones" "gemifl" "factiv,gemifioxacin,gemifloxacine,gemifloxacino,gemifloxacinum" 0.32 "g" 0.2 "g" "35814-3,35815-0,35816-8,41697-4"
"FUR" 6870646 "Furazidin" "Nitrofurans" "J01XE03,QJ01XE03" "Other antibacterials" "Nitrofuran derivatives" "NA" "akritoin,furagin,furaginum,furamag,furazidine,hydantoin" 0.3 "g" "NA"
"FRZ" 5323714 "Furazolidone" "Nitrofurans" "G01AX06,QG01AX06,QJ01XE90" "furazo" "bifuron,corizium,coryzium,diafuron,enterotoxon,furall,furanzolidone,furaxon,furaxone,furazolidine,furazolidon,furazolidona,furazolidonum,furazolum,furidon,furmethoxadone,furovag,furoxal,furoxane,furoxon,furoxone,furozolidine,giardil,giarlam,medaron,neftin,nicolen,nifulidone,nifuran,nifurazolidone,nifurazolidonum,nitrofuradoxon,nitrofurazolidone,nitrofurazolidonum,nitrofuroxon,optazol,ortazol,puradin,roptazol,sclaventerol,tikofuran,topazone,trichofuron,tricofuron,tricoron,trifurox,viofuragyn" "69574-2,87794-4"
"FUS" 3000226 "Fusidic acid" "Other" "D06AX01,D09AA02,J01XC01,QD06AX01,QD09AA02,QJ01XC01,QS01AA13,S01AA13" "Other antibacterials" "Steroid antibacterials" "fa,fusaci,fusi" "flucidin,fucidate,fucidina,fucidine,fucithalmic,fusidate,fusidicacid,fusidin,fusidine,taksta" 1.5 "g" 1.5 "g" "NA"
"GAM" 59364992 "Gamithromycin" "Macrolides" "QJ01FA95" "NA" "zactran" "100054-6,88376-9,88378-5"
"GRN" 124093 "Garenoxacin" "Fluoroquinolones,Quinolones" "J01MA19,QJ01MA19" "gareno" "ganefloxacin,garenfloxacin" 0.4 "g" "35811-9,35812-7,35813-5"
"GAT" 5379 "Gatifloxacin" "Fluoroquinolones,Quinolones" "J01MA16,QJ01MA16,QS01AE06,S01AE06" "Quinolone antibacterials" "Fluoroquinolones" "gati,gatifl" "acorafloxacin,avarofloxacin,balofloxacin,balofox,bazucin,bilimin,bonoq,gaity,gatiflo,gatifloxacine,gatifloxcin,gatilox,gatiquin,gatispan,kinome,tequin,tymer,zymar,zymaxid,zymer" 0.4 "g" 0.4 "g" "31036-7,31038-3,31040-9,31042-5,41494-6"
"GEM" 9571107 "Gemifloxacin" "Fluoroquinolones,Quinolones" "J01MA15,QJ01MA15" "Quinolone antibacterials" "Fluoroquinolones" "gemifl" "factiv,gemifioxacin,gemifloxacine,gemifloxacino,gemifloxacinum" 0.32 "g" 0.2 "g" "35814-3,35815-0,35816-8,41697-4"
"GEN" 3467 "Gentamicin" "Aminoglycosides" "D06AX07,J01GB03,QA07AA91,QD06AX07,QG01AA91,QG51AA04,QJ01GB03,QJ51GB03,QS01AA11,QS02AA14,QS03AA06,S01AA11,S02AA14,S03AA06" "Aminoglycoside antibacterials" "Other aminoglycosides" "cn,ge1000,ge2000,gen,gen128,gen500,gent,genta1,gentam,gm" "centicin,cidomycin,garamicin,garamycin,gentacycol,gentamicina,gentamicine,gentamicins,gentamicinum,gentamycins,gentamycinum,gentocin,lyramycin,oksitselanim,septigen,septocin" 0.24 "g" "101494-3,13561-6,13562-4,15106-8,18928-2,18929-0,22746-2,22747-0,266-7,267-5,268-3,269-1,31091-2,31092-0,31093-8,35668-3,35817-6,3663-2,3664-0,3665-7,39082-3,47109-4,50630-3,59379-8,7016-9,7017-7,7018-5,80971-5,88111-0,89481-6"
"GEH" "Gentamicin-high" "Aminoglycosides" "NA" "gehi,gehl,genta high,gentamicin high" "NA" "18929-0,35817-6,7017-7,7018-5"
"GEP" 25101874 "Gepotidacin" "Other antibacterials" "J01XX13,QJ01XX13" "NA" "gepotidacina,gepotidacine" "NA"
"GRX" 72474 "Grepafloxacin" "Fluoroquinolones" "J01MA11,QJ01MA11" "Quinolone antibacterials" "Fluoroquinolones" "grep,grepaf" "grepafloxacine,grepafloxacino,lungaskin,raxar,vaxar" 0.4 "g" "21316-5,23638-0,23639-8,35818-4"
"GRI" 441140 "Griseofulvin" "Antifungals/antimycotics" "D01AA08,D01BA01,QD01AA08,QD01BA01" "NA" "amudane,delmofulvina,epigriseofulvin,fulcin,fulcine,fulvicin,fulvidex,fulvina,fulvinil,fulvistatin,fungivin,greosin,gresfeed,gricin,grifulin,grifulvin,grisactin,griscofulvin,grisefuline,griseo,griseofulviin,griseofulvina,griseofulvine,griseofulvinum,griseomix,griseostatin,grisetin,grisofulvin,grisovin,grisowen,grizeofulvin,grysio,guservin,lamoryl,likuden,likunden,murfulvin,poncyl,spiro,spirofulvin,xuanjing" 0.5 "g" "12402-4,54200-1,54201-9,54202-7"
"GEP" 25101874 "Gepotidacin" "Other" "J01XX13,QJ01XX13" "NA" "gepotidacina,gepotidacine" "NA"
"GRX" 72474 "Grepafloxacin" "Fluoroquinolones,Quinolones" "J01MA11,QJ01MA11" "Quinolone antibacterials" "Fluoroquinolones" "grep,grepaf" "grepafloxacine,grepafloxacino,lungaskin,raxar,vaxar" 0.4 "g" "21316-5,23638-0,23639-8,35818-4"
"GRI" 441140 "Griseofulvin" "Antifungals" "D01AA08,D01BA01,QD01AA08,QD01BA01" "NA" "amudane,delmofulvina,epigriseofulvin,fulcin,fulcine,fulvicin,fulvidex,fulvina,fulvinil,fulvistatin,fungivin,greosin,gresfeed,gricin,grifulin,grifulvin,grisactin,griscofulvin,grisefuline,griseo,griseofulviin,griseofulvina,griseofulvine,griseofulvinum,griseomix,griseostatin,grisetin,grisofulvin,grisovin,grisowen,grizeofulvin,grysio,guservin,lamoryl,likuden,likunden,murfulvin,poncyl,spiro,spirofulvin,xuanjing" 0.5 "g" "12402-4,54200-1,54201-9,54202-7"
"HAB" 175989 "Habekacin" "Aminoglycosides" "NA" "NA" "amikafur,amikan,amitrex,arikayce,biklin,biodacyn,chemacin,fabianol,habekacinxsulfate,likacin,pierami" "NA"
"HCH" 11979956 "Hachimycin" "Antifungals/antimycotics" "D01AA03,G01AA06,J02AA02,QD01AA03,QG01AA06,QJ02AA02" "Antimycotics for systemic use" "Antibiotics" "NA" "cabimicina,hachimicina,hachimycine,hachimycinum,trichomycinum,trichonat" "NA"
"HET" 443387 "Hetacillin" "Beta-lactams/penicillins" "J01CA18,QJ01CA18" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "hetaci" "etacillina,hetacilina,hetacilline,hetacillinum,natacillin,phenazacillin,versapen,versatrex" 2 "g" "18931-6,274-1,275-8,276-6,277-4"
"HCH" 11979956 "Hachimycin" "Antifungals" "D01AA03,G01AA06,J02AA02,QD01AA03,QG01AA06,QJ02AA02" "Antimycotics for systemic use" "Antibiotics" "NA" "cabimicina,hachimicina,hachimycine,hachimycinum,trichomycinum,trichonat" "NA"
"HET" 443387 "Hetacillin" "Penicillins,Beta-lactams" "J01CA18,QJ01CA18" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "hetaci" "etacillina,hetacilina,hetacilline,hetacillinum,natacillin,phenazacillin,versapen,versatrex" 2 "g" "18931-6,274-1,275-8,276-6,277-4"
"HYG" 56928061 "Hygromycin" "Aminoglycosides" "NA" "NA" "antihelmycin,destomysin,hyanthelmix,hygromix,hygrovectine,hygrovetine" "NA"
"IBX" "Ibrexafungerp" "Antifungals" "J02AX07,QJ02AX07" "NA" "NA" "NA"
"ICL" 213043 "Iclaprim" "Other antibacterials" "J01EA03,QJ01EA03" "iclapr" "iclaprime,mersarex" "73597-7,73619-9,73642-1"
"IPM" 104838 "Imipenem" "Carbapenems" "J01DH51,QJ01DH51" "Other beta-lactam antibacterials" "Carbapenems" "imci,imi,imip,imip32,imipen,imp" "imipemide,imipenemum,imipenen,primaxin,recarbrio,tienam,tienamycin" 2 "g" "101487-7,17010-0,18932-4,18933-2,23613-3,25221-3,25257-7,27331-8,278-2,279-0,280-8,281-6,282-4,283-2,284-0,285-7,35819-2,3688-9,54170-6,54171-4,54172-2,7019-3,85424-0,93232-7,96372-8"
"IPE" "Imipenem/EDTA" "Carbapenems" "NA" "NA" "NA" "35819-2,54170-6,54171-4,54172-2"
"IMR" "Imipenem/relebactam" "Carbapenems" "J01DH56,QJ01DH56" "NA" "NA" 2 "g" "85424-0,93232-7,96372-8"
"ISV" 6918485 "Isavuconazole" "Antifungals/antimycotics" "J02AC05,QJ02AC05" "isav" "benzonitrile,ravuconazole" 0.2 "g" 0.2 "g" "85381-2,88887-5"
"ICL" 213043 "Iclaprim" "Trimethoprims" "J01EA03,QJ01EA03" "iclapr" "iclaprime,mersarex" "73597-7,73619-9,73642-1"
"IPM" 104838 "Imipenem" "Carbapenems,Beta-lactams" "J01DH51,QJ01DH51" "Other beta-lactam antibacterials" "Carbapenems" "imci,imi,imip,imip32,imipen,imp" "imipemide,imipenemum,imipenen,primaxin,recarbrio,tienam,tienamycin" 2 "g" "101487-7,17010-0,18932-4,18933-2,23613-3,25221-3,25257-7,27331-8,278-2,279-0,280-8,281-6,282-4,283-2,284-0,285-7,35819-2,3688-9,54170-6,54171-4,54172-2,7019-3,85424-0,93232-7,96372-8"
"IPE" "Imipenem/EDTA" "Carbapenems,Beta-lactams" "NA" "NA" "NA" "35819-2,54170-6,54171-4,54172-2"
"IMR" "Imipenem/relebactam" "Carbapenems,Beta-lactams,Beta-lactamase inhibitors" "J01DH56,QJ01DH56" "NA" "NA" 2 "g" "85424-0,93232-7,96372-8"
"ISV" 6918485 "Isavuconazole" "Antifungals" "J02AC05,QJ02AC05" "isav" "benzonitrile,ravuconazole" 0.2 "g" 0.2 "g" "85381-2,88887-5"
"ISE" 3037209 "Isepamicin" "Aminoglycosides" "J01GB11,QJ01GB11" "Aminoglycoside antibacterials" "Other aminoglycosides" "isepam" "isepacin,isepalline,isepamicina,isepamicine,isepamicinsulphate,isepamicinum" 0.4 "g" "32381-6,35820-0,35821-8,55680-3"
"ISO" 3760 "Isoconazole" "Antifungals/antimycotics" "D01AC05,G01AF07,QD01AC05,QG01AF07" "Antimycotics for topic use" "Triazole derivatives" "NA" "isoconazol,isoconazolum,travogen" "55681-1,55682-9,55683-7,55684-5"
"ISO" 3760 "Isoconazole" "Antifungals" "D01AC05,G01AF07,QD01AC05,QG01AF07" "Antimycotics for topic use" "Triazole derivatives" "NA" "isoconazol,isoconazolum,travogen" "55681-1,55682-9,55683-7,55684-5"
"INH" 3767 "Isoniazid" "Antimycobacterials" "J04AC01,QJ04AC01" "Drugs for treatment of tuberculosis" "Hydrazides" "inh,isonia" "abdizide,acetylisoniazide,andrazide,anidrasona,antimicina,antituberkulosum,armacide,armazid,armazide,atcotibine,azuren,cedin,cemidon,chemiazid,chemidon,continazine,cortinazine,cotinazin,cotinizin,defonin,dianicotyl,dibutin,diforin,dinacrin,dinocrin,ditubin,ebidene,eralon,ertuban,eutizon,evalon,fetefu,fimalene,hidranizil,hidrasonil,hidrulta,hidrun,hycozid,hydra,hydrazid,hyozid,hyzyd,idrazil,inizid,ipcazide,iscotin,isidrina,ismazide,isobicina,isocid,isocidene,isocotin,isohydrazide,isokin,isolyn,isonerit,isonex,isoniacid,isoniazida,isoniazide,isoniazidum,isonicazide,isonicid,isonico,isonicotan,isonicotil,isonicotinhydrazid,isonicotinohydrazide,isonide,isonidrin,isonikazid,isonilex,isonin,isonindon,isonirit,isoniton,isonizida,isonizide,isotamine,isotebe,isotebezid,isotinyl,isozid,isozide,isozyd,laniazid,laniozid,mayambutol,mybasan,neoteben,neoxin,neumandin,nevin,niadrin,nicazide,nicetal,nicizina,niconyl,nicotibina,nicotibine,nicotisan,nicozide,nidaton,nidrazid,nikozid,niplen,nitadon,niteban,nitebannsc,nydrazid,nyscozid,pelazid,percin,phthisen,preparation,pycazide,pyreazid,pyricidin,pyridicin,pyrizidin,raumanon,razide,retozide,rifater,rimicid,rimifon,rimiphone,rimitsid,robiselin,robisellin,roxifen,sanohidrazina,sauterazid,sauterzid,stanozide,tebecid,tebenic,tebexin,tebilon,tebos,teebaconin,tekazin,tibazide,tibemid,tibiazide,tibinide,tibison,tibivis,tibizide,tibusan,tisin,tisiodrazida,tizide,tubazid,tubazide,tubeco,tubecotubercid,tuberian,tubicon,tubilysin,tubizid,tubomel,tyvid,unicocyde,unicozyde,vazadrine,vederon,zidafimia,zinadon,zonazide" 0.3 "g" 0.3 "g" "18934-0,20383-6,23947-5,25217-1,25218-9,25219-7,25451-6,26756-7,286-5,287-3,288-1,289-9,29315-9,3697-0,40371-7,42649-4,42650-2,42651-0,45215-1,48171-3,48172-1,55685-2,7020-1,89488-1"
"IST" "Isoniazid/sulfamethoxazole/trimethoprim/pyridoxine" "Antimycobacterials" "NA" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"ITR" 3793 "Itraconazole" "Antifungals/antimycotics" "J02AC02,QJ02AC02" "Antimycotics for systemic use" "Triazole derivatives" "itra,itraco" "candistat,canditral,cladosal,fungitraxx,intraconazole,itraconazol,itraconazolo,itraconazolum,itraconzaole,itrafungol,itralek,itrizole,lozanoc,onmel,sempera,sporamelt,sporanox,sporonox,traconal,triasporin" 0.2 "g" 0.2 "g" "10989-2,12392-7,25258-5,25452-4,27081-9,32184-4,32185-1,32603-3,54179-7,7021-9,80531-7"
"JOS" 5282165 "Josamycin" "Macrolides/lincosamides" "J01FA07,QJ01FA07" "Macrolides, lincosamides and streptogramins" "Macrolides" "josamy" "jomybel,josamicina,josamycine,josamycinum" 2 "g" "25597-6,25702-2,41698-2,41699-0"
"IST" "Isoniazid/sulfamethoxazole/trimethoprim/pyridoxine" "Trimethoprims,Sulfonamides,Antimycobacterials" "NA" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"ITR" 3793 "Itraconazole" "Antifungals" "J02AC02,QJ02AC02" "Antimycotics for systemic use" "Triazole derivatives" "itra,itraco" "candistat,canditral,cladosal,fungitraxx,intraconazole,itraconazol,itraconazolo,itraconazolum,itraconzaole,itrafungol,itralek,itrizole,lozanoc,onmel,sempera,sporamelt,sporanox,sporonox,traconal,triasporin" 0.2 "g" 0.2 "g" "10989-2,12392-7,25258-5,25452-4,27081-9,32184-4,32185-1,32603-3,54179-7,7021-9,80531-7"
"JOS" 5282165 "Josamycin" "Macrolides" "J01FA07,QJ01FA07" "Macrolides, lincosamides and streptogramins" "Macrolides" "josamy" "jomybel,josamicina,josamycine,josamycinum" 2 "g" "25597-6,25702-2,41698-2,41699-0"
"KAN" 6032 "Kanamycin" "Aminoglycosides" "A07AA08,J01GB04,QA07AA08,QJ01GB04,QS01AA24,S01AA24" "Aminoglycoside antibacterials" "Other aminoglycosides" "hlk,k,kan,kana,kanamy,km" "kanamicina,kanamycine,kanamycins,kanamycinum,kantrex,klebcil" 3 "g" 1 "g" "18935-7,18936-5,23609-1,23889-9,25182-7,25213-0,25214-8,290-7,291-5,292-3,293-1,3698-8,3699-6,3700-2,42652-8,47395-9,49080-5,7022-7,7023-5,7024-3,88002-1,88705-9,89482-4"
"KAH" "Kanamycin-high" "Aminoglycosides" "NA" "k_h,kahl" "NA" "18936-5,7023-5,7024-3"
"KAC" "Kanamycin/cephalexin" "Aminoglycosides" "NA" "NA" "NA" "NA"
"KET" 456201 "Ketoconazole" "Antifungals/antimycotics" "D01AC08,G01AF11,H02CA03,J02AB02,QD01AC08,QG01AF11,QH02CA03,QJ02AB02" "Antimycotics for systemic use" "Imidazole derivatives" "keto,ketoco,ktc" "brizoral,ethanone,extina,fungarest,fungoral,ketaconazole,ketocanazole,ketoconazol,ketoconazolum,ketodan,ketoderm,ketoisdin,ketozole,kuric,levoketoconazole,nizoral,normocort,panfungol,piperazine,recorlev,sebazole,teryzolin,terzolin,tocris,xolegel" 0.6 "g" "10990-0,12393-5,18937-3,25259-3,294-9,295-6,296-4,297-2,60091-6,60092-4,7025-0"
"KIT" "Kitasamycin" "Macrolides/lincosamides" "QJ01FA93" "leucomycin" "NA" "NA"
"LAS" 5360807 "Lasalocid" "Other antibacterials" "QP51BB02" "NA" "avatec,bovate,bovatec,lasalocide,lasalocido,lasalocidsalt,lasalocidum" "87598-9"
"LSC" 71528768 "Lascufloxacin" "Fluoroquinolones" "J01MA25,QJ01MA25" "Quinolone antibacterials" "Fluoroquinolones" "NA" "lasvic" 75 "mg" "NA"
"LTM" 47499 "Latamoxef" "Cephalosporins (3rd gen.)" "J01DD06,QJ01DD06" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "mox,moxa,moxalactam" "dilatamoxef,festamoxin,lamoxactam,latamoxefum,morrhuate,moxalactamsalt,moxam,shiomarin" 4 "g" "NA"
"LMU" 25185057 "Lefamulin" "Other antibacterials" "J01XX12,QJ01XX12" "NA" "lefamulinacetate,xenleta" "85425-7,99281-8"
"LEN" 65646 "Lenampicillin" "Beta-lactams/penicillins" "NA" "NA" "lenampicilina,lenampicilline,lenampicillinum,takacillin,valacillin,varacillin" "NA"
"LVX" 149096 "Levofloxacin" "Fluoroquinolones" "J01MA12,QJ01MA12,QS01AE05,S01AE05" "Quinolone antibacterials" "Fluoroquinolones" "le,lev,levo,levofl,lvx" "aeroquin,cravit,dextrofloxacin,dynaquin,elequine,iquix,levaquin,levofiexacin,levofloxacine,levofloxacino,levofloxacinum,loxof,ofloxcacin,oftaquix,quinsair,quixin,tavanic,unibiotic,venaxan" 0.5 "g" 0.5 "g" "101501-5,20396-8,20629-2,21367-8,21368-6,30532-6,30533-4,48173-9,53716-7,7026-8,76040-5,76041-3,76042-1"
"LEO" "Levofloxacin/ornidazole" "Fluoroquinolones" "J01RA05,QJ01RA05" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"LND" 9850038 "Levonadifloxacin" "Fluoroquinolones" "J01MA24,QJ01MA24" "NA" "NA" "NA"
"LSP" "Linco-spectin" "Other antibacterials" "NA" "lincomycin/spectinomycin" "NA" "NA"
"LIN" 3000540 "Lincomycin" "Macrolides/lincosamides" "J01FF02,QJ01FF02,QJ51FF02" "Macrolides, lincosamides and streptogramins" "Lincosamides" "linc,lincom" "albiotic,bactramycin,cillimycin,frademicina,jiemycin,lincocin,lincogap,lincolcina,lincolnensin,lincomicina,lincomix,lincomycine,lincomycinum,lincomyocin,lincorex,linocin,mycivin" 1.8 "g" 1.8 "g" "18938-1,298-0,299-8,300-4,301-2,41700-6,87597-1"
"KET" 456201 "Ketoconazole" "Antifungals" "D01AC08,G01AF11,H02CA03,J02AB02,QD01AC08,QG01AF11,QH02CA03,QJ02AB02" "Antimycotics for systemic use" "Imidazole derivatives" "keto,ketoco,ktc" "brizoral,ethanone,extina,fungarest,fungoral,ketaconazole,ketocanazole,ketoconazol,ketoconazolum,ketodan,ketoderm,ketoisdin,ketozole,kuric,levoketoconazole,nizoral,normocort,panfungol,piperazine,recorlev,sebazole,teryzolin,terzolin,tocris,xolegel" 0.6 "g" "10990-0,12393-5,18937-3,25259-3,294-9,295-6,296-4,297-2,60091-6,60092-4,7025-0"
"KIT" "Kitasamycin" "Macrolides" "QJ01FA93" "leucomycin" "NA" "NA"
"LAS" 5360807 "Lasalocid" "Other" "QP51BB02" "NA" "avatec,bovate,bovatec,lasalocide,lasalocido,lasalocidsalt,lasalocidum" "87598-9"
"LSC" 71528768 "Lascufloxacin" "Fluoroquinolones,Quinolones" "J01MA25,QJ01MA25" "Quinolone antibacterials" "Fluoroquinolones" "NA" "lasvic" 75 "mg" "NA"
"LTM" 47499 "Latamoxef" "Cephalosporins (3rd gen.),Cephalosporins,Beta-lactams" "J01DD06,QJ01DD06" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "mox,moxa,moxalactam" "dilatamoxef,festamoxin,lamoxactam,latamoxefum,morrhuate,moxalactamsalt,moxam,shiomarin" 4 "g" "NA"
"LMU" 25185057 "Lefamulin" "Other" "J01XX12,QJ01XX12" "NA" "lefamulinacetate,xenleta" "85425-7,99281-8"
"LEN" 65646 "Lenampicillin" "Penicillins,Beta-lactams" "NA" "NA" "lenampicilina,lenampicilline,lenampicillinum,takacillin,valacillin,varacillin" "NA"
"LVX" 149096 "Levofloxacin" "Fluoroquinolones,Quinolones" "J01MA12,QJ01MA12,QS01AE05,S01AE05" "Quinolone antibacterials" "Fluoroquinolones" "le,lev,levo,levofl,lvx" "aeroquin,cravit,dextrofloxacin,dynaquin,elequine,iquix,levaquin,levofiexacin,levofloxacine,levofloxacino,levofloxacinum,loxof,ofloxcacin,oftaquix,quinsair,quixin,tavanic,unibiotic,venaxan" 0.5 "g" 0.5 "g" "101501-5,20396-8,20629-2,21367-8,21368-6,30532-6,30533-4,48173-9,53716-7,7026-8,76040-5,76041-3,76042-1"
"LEO" "Levofloxacin/ornidazole" "Fluoroquinolones,Quinolones" "J01RA05,QJ01RA05" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"LND" 9850038 "Levonadifloxacin" "Fluoroquinolones,Quinolones" "J01MA24,QJ01MA24" "NA" "NA" "NA"
"LSP" "Linco-spectin" "Other" "NA" "lincomycin/spectinomycin" "NA" "NA"
"LIN" 3000540 "Lincomycin" "Lincosamides" "J01FF02,QJ01FF02,QJ51FF02" "Macrolides, lincosamides and streptogramins" "Lincosamides" "linc,lincom" "albiotic,bactramycin,cillimycin,frademicina,jiemycin,lincocin,lincogap,lincolcina,lincolnensin,lincomicina,lincomix,lincomycine,lincomycinum,lincomyocin,lincorex,linocin,mycivin" 1.8 "g" 1.8 "g" "18938-1,298-0,299-8,300-4,301-2,41700-6,87597-1"
"LNZ" 441401 "Linezolid" "Oxazolidinones" "J01XX08,QJ01XX08" "Other antibacterials" "Other antibacterials" "line,linezo,lnz,lz,lzd" "desfluorolinezolid,linezoid,linezolidum,zivoxid,zyvox,zyvoxa,zyvoxam,zyvoxid" 1.2 "g" 1.2 "g" "29254-0,29255-7,29258-1,33332-8,34202-2,41500-0,80609-1,88706-7,96111-0"
"LFE" "Linoprist-flopristin" "Other antibacterials" "NA" "linflo" "NA" "NA"
"LOM" 3948 "Lomefloxacin" "Fluoroquinolones" "J01MA07,QJ01MA07,QS01AE04,S01AE04" "Quinolone antibacterials" "Fluoroquinolones" "lmf,lom,lome,lomefl" "bareon,logiflox,lomebact,lomefloxacine,lomefloxacino,lomefloxacinum,maxaquin,maxaquine,mazaquin,okacin,okacyn,uniquin" 0.4 "g" "18939-9,302-0,303-8,304-6,305-3,41701-4"
"LOR" 5284585 "Loracarbef" "Cephalosporins (2nd gen.)" "J01DC08,QJ01DC08" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "lora,loraca" "carbac,lorabid,loracarbefum,lorafem,lorbef,loribid" 0.6 "g" "18940-7,306-1,307-9,308-7,309-5,7027-6"
"LFE" "Linoprist-flopristin" "Other" "NA" "linflo" "NA" "NA"
"LOM" 3948 "Lomefloxacin" "Fluoroquinolones,Quinolones" "J01MA07,QJ01MA07,QS01AE04,S01AE04" "Quinolone antibacterials" "Fluoroquinolones" "lmf,lom,lome,lomefl" "bareon,logiflox,lomebact,lomefloxacine,lomefloxacino,lomefloxacinum,maxaquin,maxaquine,mazaquin,okacin,okacyn,uniquin" 0.4 "g" "18939-9,302-0,303-8,304-6,305-3,41701-4"
"LOR" 5284585 "Loracarbef" "Cephalosporins (2nd gen.),Cephalosporins,Beta-lactams" "J01DC08,QJ01DC08" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "lora,loraca" "carbac,lorabid,loracarbefum,lorafem,lorbef,loribid" 0.6 "g" "18940-7,306-1,307-9,308-7,309-5,7027-6"
"LYM" 54707177 "Lymecycline" "Tetracyclines" "J01AA04,QJ01AA04" "Tetracyclines" "Tetracyclines" "NA" "armyl,chlortetracyclin,ciclisin,ciclolysal,ciclolysine,eficiclina,infaciclina,limeciclina,lisinbiotic,lymecyclinum,mucomycin,ntetracycline,tetralisal,tetralysal,vebicyclysal" 0.6 "g" 0.6 "g" "18941-5,310-3,311-1,312-9,313-7"
"MNA" 1292 "Mandelic acid" "Other antibacterials" "B05CA06,J01XX06,QB05CA06,QJ01XX06" "Other antibacterials" "Other antibacterials" "NA" "amygdalate,mandelsaeure,paramandelate,phenylglycolate,phenylhydroxyacetate,uromaline" 12 "g" "NA"
"MNA" 1292 "Mandelic acid" "Other" "B05CA06,J01XX06,QB05CA06,QJ01XX06" "Other antibacterials" "Other antibacterials" "NA" "amygdalate,mandelsaeure,paramandelate,phenylglycolate,phenylhydroxyacetate,uromaline" 12 "g" "NA"
"MGX" "Manogepix" "Antifungals" "NA" "NA" "NA" "NA"
"MAR" 60651 "Marbofloxacin" "Fluoroquinolones" "QJ01MA93" "marbof" "marbocyl,marbofloxacine,marbofloxacino,marbofloxacinum,marboquin,zeniquin" "73596-9,73618-1,73641-3"
"MEC" 36273 "Mecillinam" "Beta-lactams/penicillins" "J01CA11,QJ01CA11" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "amdinocillin,mecill" "amdinocillin,coactin,hexacillin,mecilinamo,mecillinamum,selexidin" 1.2 "g" "NA"
"MEL" 71306732 "Meleumycin" "Macrolides/lincosamides" "NA" "NA" "NA" "NA"
"MEM" 441130 "Meropenem" "Carbapenems" "J01DH02,QJ01DH02" "Other beta-lactam antibacterials" "Carbapenems" "mem,mer,mero,merope,mp,mrp" "meronem,meropen,meropenemum,merrem" 3 "g" "101222-8,101488-5,101489-3,18943-1,41406-0,6651-4,6652-2,6653-0,6654-8,7029-2,85426-5,85427-3,88892-5,90980-4"
"MNC" "Meropenem/nacubactam" "Carbapenems" "NA" "NA" "NA" "NA"
"MEV" "Meropenem/vaborbactam" "Carbapenems" "J01DH52,QJ01DH52" "Other beta-lactam antibacterials" "Carbapenems" "NA" "NA" 3 "g" "101222-8,101489-3,85427-3,88892-5,90980-4"
"MES" 176886 "Mesulfamide" "Other antibacterials" "NA" "NA" "mesulfamida,mesulfamido,mesulfamidum" "NA"
"MAR" 60651 "Marbofloxacin" "Fluoroquinolones,Quinolones" "QJ01MA93" "marbof" "marbocyl,marbofloxacine,marbofloxacino,marbofloxacinum,marboquin,zeniquin" "73596-9,73618-1,73641-3"
"MEC" 36273 "Mecillinam" "Penicillins,Beta-lactams" "J01CA11,QJ01CA11" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "amdinocillin,mecill" "amdinocillin,coactin,hexacillin,mecilinamo,mecillinamum,selexidin" 1.2 "g" "NA"
"MEL" 71306732 "Meleumycin" "Macrolides" "NA" "NA" "NA" "NA"
"MEM" 441130 "Meropenem" "Carbapenems,Beta-lactams" "J01DH02,QJ01DH02" "Other beta-lactam antibacterials" "Carbapenems" "mem,mer,mero,merope,mp,mrp" "meronem,meropen,meropenemum,merrem" 3 "g" "101222-8,101488-5,101489-3,18943-1,41406-0,6651-4,6652-2,6653-0,6654-8,7029-2,85426-5,85427-3,88892-5,90980-4"
"MNC" "Meropenem/nacubactam" "Carbapenems,Beta-lactams,Beta-lactamase inhibitors" "NA" "NA" "NA" "NA"
"MEV" "Meropenem/vaborbactam" "Carbapenems,Beta-lactams,Beta-lactamase inhibitors" "J01DH52,QJ01DH52" "Other beta-lactam antibacterials" "Carbapenems" "NA" "NA" 3 "g" "101222-8,101489-3,85427-3,88892-5,90980-4"
"MES" 176886 "Mesulfamide" "Other" "NA" "NA" "mesulfamida,mesulfamido,mesulfamidum" "NA"
"MTC" 54675785 "Metacycline" "Tetracyclines" "J01AA05,QJ01AA05" "Tetracyclines" "Tetracyclines" "methcy" "bialatan,metaciclina,metacyclinum,methacyclin,methacycline,methacyclinum,methylenecycline,physiomycine,rondomycin" 0.6 "g" "NA"
"MTM" 6713928 "Metampicillin" "Beta-lactams/penicillins" "J01CA14,QJ01CA14" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "blomopen,bonopen,celinmicina,elatocilline,filorex,magnipen,metambac,metampen,metampicilina,metampicillina,metampicilline,metampicillinsalt,metampicillinum,micinovo,ocelina,pangocilin,probiotic,relyothenate,ruticina,rutizina,sedomycin,serfabiotic,suvipen,viderpen,viderpin,vioplex" 1.5 "g" 1.5 "g" "NA"
"MTH" 4101 "Methenamine" "Other antibacterials" "J01XX05,QJ01XX05" "Other antibacterials" "Other antibacterials" "NA" "aminoform,aminoformaldehyde,ammoform,ammonioformaldehyde,antihydral,carin,cystamin,cystex,cystogen,duirexol,esametilentetramina,formamine,formin,grasselerator,heterin,hexaform,hexaloids,hexamethylamine,hexamethylenamine,hexamethyleneamine,hexamethylentetramin,hexamine,hexaminum,hexasan,hexilmethylenamine,metenamina,metenamine,methamin,methamine,methenamin,methenaminum,metramine,naphthamine,pellurin,resotropin,uramin,urasal,uratrine,urisol,uritone,urodeine,urotropin,urotropine,vesaloin,xametrin" 3 "g" "NA"
"MET" 6087 "Meticillin" "Beta-lactams/penicillins" "J01CF03,QJ01CF03,QJ51CF03" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "methic,meti" "belfacillin,celbenin,celpilline,cinopenil,dimocillin,estafcilina,flabelline,lucopenin,metacillin,methcillin,methicillin,methicillinanhydrous,methicillinhydrate,methicillinsalt,methicillinum,methycillin,meticilina,meticillina,meticilline,meticillinsalt,meticillinum,penaureus,penysol,staficyn,staphcillin,synticillin" 4 "g" "NA"
"MTP" 68590 "Metioprim" "Other antibacterials" "NA" "NA" "methioprim,metioprima,metioprime,metioprimum" "NA"
"MXT" 3047729 "Metioxate" "Fluoroquinolones" "NA" "NA" "metioxato,metioxatum" "NA"
"MTR" 4173 "Metronidazole" "Other antibacterials" "A01AB17,D06BX01,G01AF01,J01XD01,P01AB01,QA01AB17,QD06BX01,QG01AF01,QJ01XD01,QP51CA01" "Other antibacterials" "Imidazole derivatives" "metr,metron,mnz,mtz" "acromona,anagiardil,arilin,atrivyl,bexon,clont,danizol,deflamon,donnan,efloran,elyzol,entizol,eumin,flagemona,flagesol,flagil,flagyl,flazol,flegyl,florazole,fossyol,giatricol,gineflavir,givagil,hydroxydimetridazole,hydroxymetronidazole,izoklion,klion,klont,mepagyl,meronidal,metric,metrolag,metrolyl,metromidol,metronidazolo,metronidazolum,metroplex,metrotop,mexibol,monagyl,monasin,nalox,nidagyl,noritate,novonidazol,nuvessa,orvagil,polibiotic,protostat,rathimed,rosaced,rosased,sanatrichom,satric,takimetol,trichazol,trichex,trichobrol,trichocide,trichomol,trichopal,trichopol,tricocet,tricom,trikacide,trikamon,trikhopol,trikojol,trikozol,trimeks,trivazol,vagilen,vagimid,vandazole,vertisal,wagitran,zadstat,zidoval" 2 "g" 1.5 "g" "10991-8,18946-4,326-9,327-7,328-5,329-3,7031-8"
"MEZ" 656511 "Mezlocillin" "Beta-lactams/penicillins" "J01CA10,QJ01CA10" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "mez,mezl,mezlo,mz" "baycipen,baypen,mezlin,mezlocilina,mezlocilline,mezlocillinsalt,mezlocillinum,multocillin" 6 "g" "18947-2,330-1,331-9,332-7,333-5,3820-8,41702-2,54194-6,54195-3,54196-1"
"MSU" "Mezlocillin/sulbactam" "Beta-lactams/penicillins" "NA" "mezsul" "NA" "54194-6,54195-3,54196-1"
"MIF" 477468 "Micafungin" "Antifungals/antimycotics" "J02AX05,QJ02AX05" "Antimycotics for systemic use" "Other antimycotics for systemic use" "mica,micafu" "fungard,funguard,micafungina,micafunginsalt,mycamine" 0.1 "g" "53812-4,58418-5,65340-2,85048-7"
"MCZ" 4189 "Miconazole" "Antifungals/antimycotics" "A01AB09,A07AC01,D01AC02,G01AF04,J02AB01,QA01AB09,QA07AC01,QD01AC02,QG01AF04,QJ02AB01,QS02AA13,S02AA13" "Antimycotics for systemic use" "Imidazole derivatives" "mico" "aflorix,albistat,andergin,brentan,conofite,dactarin,florid,micantin,miconazol,miconazolo,miconazolum,micozole,minostate,monazole,monista,monistat,oravig,vusion,zimybase,zimycan" 0.2 "g" 1 "g" "17278-3,25607-3,25722-0,54180-5,55686-0"
"MTM" 6713928 "Metampicillin" "Penicillins,Beta-lactams" "J01CA14,QJ01CA14" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "blomopen,bonopen,celinmicina,elatocilline,filorex,magnipen,metambac,metampen,metampicilina,metampicillina,metampicilline,metampicillinsalt,metampicillinum,micinovo,ocelina,pangocilin,probiotic,relyothenate,ruticina,rutizina,sedomycin,serfabiotic,suvipen,viderpen,viderpin,vioplex" 1.5 "g" 1.5 "g" "NA"
"MTH" 4101 "Methenamine" "Other" "J01XX05,QJ01XX05" "Other antibacterials" "Other antibacterials" "NA" "aminoform,aminoformaldehyde,ammoform,ammonioformaldehyde,antihydral,carin,cystamin,cystex,cystogen,duirexol,esametilentetramina,formamine,formin,grasselerator,heterin,hexaform,hexaloids,hexamethylamine,hexamethylenamine,hexamethyleneamine,hexamethylentetramin,hexamine,hexaminum,hexasan,hexilmethylenamine,metenamina,metenamine,methamin,methamine,methenamin,methenaminum,metramine,naphthamine,pellurin,resotropin,uramin,urasal,uratrine,urisol,uritone,urodeine,urotropin,urotropine,vesaloin,xametrin" 3 "g" "NA"
"MET" 6087 "Meticillin" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "J01CF03,QJ01CF03,QJ51CF03" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "methic,meti" "belfacillin,celbenin,celpilline,cinopenil,dimocillin,estafcilina,flabelline,lucopenin,metacillin,methcillin,methicillin,methicillinanhydrous,methicillinhydrate,methicillinsalt,methicillinum,methycillin,meticilina,meticillina,meticilline,meticillinsalt,meticillinum,penaureus,penysol,staficyn,staphcillin,synticillin" 4 "g" "NA"
"MTP" 68590 "Metioprim" "Other" "NA" "NA" "methioprim,metioprima,metioprime,metioprimum" "NA"
"MXT" 3047729 "Metioxate" "Fluoroquinolones,Quinolones" "NA" "NA" "metioxato,metioxatum" "NA"
"MTR" 4173 "Metronidazole" "Other" "A01AB17,D06BX01,G01AF01,J01XD01,P01AB01,QA01AB17,QD06BX01,QG01AF01,QJ01XD01,QP51CA01" "Other antibacterials" "Imidazole derivatives" "metr,metron,mnz,mtz" "acromona,anagiardil,arilin,atrivyl,bexon,clont,danizol,deflamon,donnan,efloran,elyzol,entizol,eumin,flagemona,flagesol,flagil,flagyl,flazol,flegyl,florazole,fossyol,giatricol,gineflavir,givagil,hydroxydimetridazole,hydroxymetronidazole,izoklion,klion,klont,mepagyl,meronidal,metric,metrolag,metrolyl,metromidol,metronidazolo,metronidazolum,metroplex,metrotop,mexibol,monagyl,monasin,nalox,nidagyl,noritate,novonidazol,nuvessa,orvagil,polibiotic,protostat,rathimed,rosaced,rosased,sanatrichom,satric,takimetol,trichazol,trichex,trichobrol,trichocide,trichomol,trichopal,trichopol,tricocet,tricom,trikacide,trikamon,trikhopol,trikojol,trikozol,trimeks,trivazol,vagilen,vagimid,vandazole,vertisal,wagitran,zadstat,zidoval" 2 "g" 1.5 "g" "10991-8,18946-4,326-9,327-7,328-5,329-3,7031-8"
"MEZ" 656511 "Mezlocillin" "Ureidopenicillins,Penicillins,Beta-lactams" "J01CA10,QJ01CA10" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "mez,mezl,mezlo,mz" "baycipen,baypen,mezlin,mezlocilina,mezlocilline,mezlocillinsalt,mezlocillinum,multocillin" 6 "g" "18947-2,330-1,331-9,332-7,333-5,3820-8,41702-2,54194-6,54195-3,54196-1"
"MSU" "Mezlocillin/sulbactam" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "NA" "mezsul" "NA" "54194-6,54195-3,54196-1"
"MIF" 477468 "Micafungin" "Antifungals" "J02AX05,QJ02AX05" "Antimycotics for systemic use" "Other antimycotics for systemic use" "mica,micafu" "fungard,funguard,micafungina,micafunginsalt,mycamine" 0.1 "g" "53812-4,58418-5,65340-2,85048-7"
"MCZ" 4189 "Miconazole" "Antifungals" "A01AB09,A07AC01,D01AC02,G01AF04,J02AB01,QA01AB09,QA07AC01,QD01AC02,QG01AF04,QJ02AB01,QS02AA13,S02AA13" "Antimycotics for systemic use" "Imidazole derivatives" "mico" "aflorix,albistat,andergin,brentan,conofite,dactarin,florid,micantin,miconazol,miconazolo,miconazolum,micozole,minostate,monazole,monista,monistat,oravig,vusion,zimybase,zimycan" 0.2 "g" 1 "g" "17278-3,25607-3,25722-0,54180-5,55686-0"
"MCR" 3037206 "Micronomicin" "Aminoglycosides" "QS01AA22,S01AA22" "micron" "micromicin,micromycin,micronomicina,micronomicine,micronomicinum,sagamicin,santemycin" "NA"
"MID" 5282169 "Midecamycin" "Macrolides/lincosamides" "J01FA03,QJ01FA03" "Macrolides, lincosamides and streptogramins" "Macrolides" "mideka" "macropen,madecacine,medemycin,midecamicina,midecamycine,midecamycinum,midecin,momicine,myoxam,normicina,rubimycin" 1.2 "g" 1 "g" "NA"
"MIL" 37614 "Miloxacin" "Fluoroquinolones" "NA" "amiflo" "miloxacine,miloxacino,miloxacinum" "NA"
"MID" 5282169 "Midecamycin" "Macrolides" "J01FA03,QJ01FA03" "Macrolides, lincosamides and streptogramins" "Macrolides" "mideka" "macropen,madecacine,medemycin,midecamicina,midecamycine,midecamycinum,midecin,momicine,myoxam,normicina,rubimycin" 1.2 "g" 1 "g" "NA"
"MIL" 37614 "Miloxacin" "Fluoroquinolones,Quinolones" "NA" "amiflo" "miloxacine,miloxacino,miloxacinum" "NA"
"MNO" 54675783 "Minocycline" "Tetracyclines" "A01AB23,D10AF07,J01AA08,QA01AB23,QD10AF07,QJ01AA08" "Tetracyclines" "Tetracyclines" "mc,mh,mi,min,mino,minocy,mn,mno" "acnez,arestin,borymycin,dynacin,lederderm,minociclina,minocin,minocline,minocyclin,minocyclinum,minocyn,minomax,minomycin,mynocine,periocline,solodyn,vectrin,ximino" 1 "mg" 0.2 "g" "18948-0,25225-4,334-3,335-0,336-8,337-6,34606-4,3822-4,49757-8,55156-4,7032-6"
"MCM" 5282188 "Miocamycin" "Macrolides/lincosamides" "J01FA11,QJ01FA11" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "acecamycin,macroral,miocamen,miocamycine,miokamycin,mosil,myocamicin,ponsinomycin" 1.2 "g" "18949-8,338-4,339-2,340-0,341-8,55687-8"
"MON" 23667299 "Monensin sodium" "Other antibacterials" "NA" "NA" "coban,elancoban,monelan,monensin,monensina,monensine,monensinum,monovet,romensin,rumensin" "NA"
"MCM" 5282188 "Miocamycin" "Macrolides" "J01FA11,QJ01FA11" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "acecamycin,macroral,miocamen,miocamycine,miokamycin,mosil,myocamicin,ponsinomycin" 1.2 "g" "18949-8,338-4,339-2,340-0,341-8,55687-8"
"MON" 23667299 "Monensin sodium" "Other" "NA" "NA" "coban,elancoban,monelan,monensin,monensina,monensine,monensinum,monovet,romensin,rumensin" "NA"
"MRN" 70374 "Morinamide" "Antimycobacterials" "J04AK04,QJ04AK04" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "NA" "morfazinamide,morfazinammide,morfgazinamide,morinamida,morinamidum,morphazinamid,morphazinamide,piazofolina,piazolin,piazolina" "NA"
"MFX" 152946 "Moxifloxacin" "Fluoroquinolones" "J01MA14,QJ01MA14,QS01AE07,S01AE07" "Quinolone antibacterials" "Fluoroquinolones" "mox,moxi,moxifl,mxf" "actira,actura,avalox,avelox,avolex,izilox,moxeza,moxifloxacine,moxifloxacino,octegra,vegamox,vigamox,zimoxin" 0.4 "g" 0.4 "g" "31037-5,31039-1,31041-7,31043-3,41502-6,43751-7,45223-5,76043-9,76044-7,76045-4,80540-8,88707-5,93497-6,96112-8"
"MUP" 446596 "Mupirocin" "Other antibacterials" "D06AX09,QD06AX09,QR01AX06,R01AX06" "mup,mupi,mupiro" "bactoderm,bactroban,centany,mupirocina,mupirocine,mupirocinum,plasimine,turixin" "20389-3,35822-6,35823-4,60542-8,60543-6,7033-4"
"NAC" 73386748 "Nacubactam" "Beta-lactams/penicillins" "NA" "NA" "NA" "NA"
"NAD" 4410 "Nadifloxacin" "Fluoroquinolones" "D10AF05,QD10AF05" "NA" "acuatim,nadifloxacine,nadifloxacino,nadifloxacinum,nadixa,nadoxin" "NA"
"NAF" 8982 "Nafcillin" "Beta-lactams/penicillins" "J01CF06,QJ01CF06" "nafcil" "nafcil,nafcilin,nafcilina,nafcillinanhydrous,nafcilline,nafcillinhydrate,nafcillinmonohydrate,nafcillinsalt,nafcillinum,naftopen,nallpen,naphcillin,naphthicillin,unipen" 3 "g" "10993-4,18951-4,25232-0,346-7,347-5,348-3,349-1,41704-8"
"ZWK" 117587595 "Nafithromycin" "Macrolides/lincosamides" "NA" "NA" "NA" "NA"
"MFX" 152946 "Moxifloxacin" "Fluoroquinolones,Quinolones" "J01MA14,QJ01MA14,QS01AE07,S01AE07" "Quinolone antibacterials" "Fluoroquinolones" "mox,moxi,moxifl,mxf" "actira,actura,avalox,avelox,avolex,izilox,moxeza,moxifloxacine,moxifloxacino,octegra,vegamox,vigamox,zimoxin" 0.4 "g" 0.4 "g" "31037-5,31039-1,31041-7,31043-3,41502-6,43751-7,45223-5,76043-9,76044-7,76045-4,80540-8,88707-5,93497-6,96112-8"
"MUP" 446596 "Mupirocin" "Other" "D06AX09,QD06AX09,QR01AX06,R01AX06" "mup,mupi,mupiro" "bactoderm,bactroban,centany,mupirocina,mupirocine,mupirocinum,plasimine,turixin" "20389-3,35822-6,35823-4,60542-8,60543-6,7033-4"
"NAC" 73386748 "Nacubactam" "Beta-lactamase inhibitors" "NA" "NA" "NA" "NA"
"NAD" 4410 "Nadifloxacin" "Fluoroquinolones,Quinolones" "D10AF05,QD10AF05" "NA" "acuatim,nadifloxacine,nadifloxacino,nadifloxacinum,nadixa,nadoxin" "NA"
"NAF" 8982 "Nafcillin" "Penicillins,Beta-lactams" "J01CF06,QJ01CF06" "nafcil" "nafcil,nafcilin,nafcilina,nafcillinanhydrous,nafcilline,nafcillinhydrate,nafcillinmonohydrate,nafcillinsalt,nafcillinum,naftopen,nallpen,naphcillin,naphthicillin,unipen" 3 "g" "10993-4,18951-4,25232-0,346-7,347-5,348-3,349-1,41704-8"
"ZWK" 117587595 "Nafithromycin" "Macrolides" "NA" "NA" "NA" "NA"
"NAL" 4421 "Nalidixic acid" "Quinolones" "J01MB02,QJ01MB02" "Quinolone antibacterials" "Other quinolones" "na,nal,nalac,nali" "amfonelinsaeure,baktogram,betaxina,chemiurin,cybis,dixiben,dixilina,dixinal,eucisten,eucistin,innoxalomn,innoxalon,jicsron,kusnarin,nalidicron,nalidixan,nalidixane,nalidixate,nalidixateanhydrous,nalidixic,nalidixin,nalidixinsaure,nalitucsan,nalix,nalurin,narigix,naxuril,negram,nevigramon,nicelate,nogram,poleon,sicmylon,specifen,specifin,unaserus,uralgin,uriben,uriclar,urisal,urodixin,uroman,uroneg,uronidix,uropan,wintomylon,wintron" 4 "g" "NA"
"NAL-S" "Nalidixic acid screening test" "Quinolones" "NA" "nal screen" "NA" "NA"
"NAR" 65452 "Narasin" "Other antibacterials" "QP51BB04" "narasi" "monteban,narasine,narasino,narasinum,skycis" "87570-8"
"NEM" 11993740 "Nemonoxacin" "Fluoroquinolones" "J01MB08,QJ01MB08" "Quinolone antibacterials" "Other quinolones" "NA" "NA" "NA"
"NAR" 65452 "Narasin" "Other" "QP51BB04" "narasi" "monteban,narasine,narasino,narasinum,skycis" "87570-8"
"NEM" 11993740 "Nemonoxacin" "Fluoroquinolones,Quinolones" "J01MB08,QJ01MB08" "Quinolone antibacterials" "Other quinolones" "NA" "NA" "NA"
"NEO" 8378 "Neomycin" "Aminoglycosides" "A01AB08,A07AA01,B05CA09,D06AX04,J01GB05,QA01AB08,QA07AA01,QB05CA09,QD06AX04,QJ01GB05,QR02AB01,QS01AA03,QS02AA07,QS03AA01,R02AB01,S01AA03,S02AA07,S03AA01" "Aminoglycoside antibacterials" "Other aminoglycosides" "neom,neomyc" "NA" 5 "g" 1 "g" "10995-9,18953-0,25262-7,354-1,355-8,356-6,357-4,41705-5"
"NET" 441306 "Netilmicin" "Aminoglycosides" "J01GB07,QJ01GB07,QS01AA23,S01AA23" "Aminoglycoside antibacterials" "Other aminoglycosides" "neti,netilm" "netillin,netilmicina,netilmicine,netilmicinum,netilyn,netira,netromicine,netromycin,nettacin,ntromicine,ntromycin,vectacin,zetamicin" 0.35 "g" 0.35 "g" "18954-8,25263-5,358-2,359-0,360-8,361-6,3848-9,3849-7,3850-5,47385-0,59565-2,59566-0,59567-8,7035-9"
"NIC" 9507 "Nicarbazin" "Other antibacterials" "NA" "NA" "nicarb,nicarbasin,nicarbazine,nicarmix,nicoxin,nicrazin,nicrazine,nirazin" "NA"
"NIF" 71946 "Nifuroquine" "Fluoroquinolones" "NA" "NA" "abimasten,nifuroquina,nifuroquinum,quinaldofur" "NA"
"NFR" 9571062 "Nifurtoinol" "Other antibacterials" "J01XE02,QJ01XE02" "Other antibacterials" "Nitrofuran derivatives" "NA" "levantin,nifurmazol,nifurmazole,nifurmazolo,nifurmazolum,nifurtoinolo,nifurtoinolum,urfadin,urfadine,urfadyn" 0.16 "g" "NA"
"NTZ" 41684 "Nitazoxanide" "Other antibacterials" "P01AX11" "NA" "alinia,benzamide,colufase,cryptaz,daxon,dexidex,heliton,kidonax,nitax,nitaxozanid,nitaxozanide,nitazox,nitazoxamide,nitazoxanid,nitazoxanida,nitazoxanidum,nitrazoxanide,pacovanton,paramix,phavic" 1 "g" "73595-1,73617-3,73640-5"
"NIT" 6604200 "Nitrofurantoin" "Other antibacterials" "J01XE01,QJ01XE01" "Other antibacterials" "Nitrofuran derivatives" "f,f/m,fd,ft,ni,nit,nit16,nitr,nitro" "alfuran,benkfuran,berkfuran,berkfurin,ceduran,chemiofuran,cistofuran,cyantin,cystit,dantafur,fuamed,furabid,furachel,furadantin,furadantine,furadantoin,furadoin,furadoine,furadonin,furadonine,furadoninum,furadontin,furalan,furaloid,furantoina,furatoin,furedan,furina,furobactina,furodantin,gerofuran,ituran,macpac,macrobid,macrodantin,macrodantina,macrofuran,macrofurin,nierofu,nifuraden,nifuradene,nifuradeno,nifuradenum,nifuradine,nifurantin,nifuretten,nitoin,nitrex,nitrofuradantin,nitrofurantoina,nitrofurantoine,nitrofurantoinum,novofuran,orafuran,oxafuradene,oxafurandene,oxifuradene,oxyfuradene,parfuran,phenurin,renafur,siraliden,trantoin,uerineks,urizept,urodin,urofuran,urofurin,urolisa,urolong,uvamin,welfurin,zoofurin" 0.2 "g" "18955-5,362-4,363-2,364-0,365-7,3860-4,7036-7"
"NIZ" 5447130 "Nitrofurazone" "Other antibacterials" "NA" "nitfur" "acutol,aldomycin,alfucin,amifur,babrocid,becafurazone,biofuracina,biofurea,chemofuran,chixin,cocafurin,coxistat,dermofural,dymazone,dynazone,eldezol,fedacin,flavazone,fracine,furacilin,furacilinum,furacillin,furacin,furacine,furacinetten,furacoccid,furacort,furacycline,furaderm,furagent,furalcyn,furaldon,furalone,furametral,furaplast,furaseptyl,furaskin,furatsilin,furaziline,furazin,furazina,furazyme,furesol,furosem,fuvacillin,hemofuran,hydrazinecarboxamide,ibiofural,mammex,mastofuran,monafuracin,monafuracis,monofuracin,nefco,nifucin,nifurid,nifuzon,nitrofural,nitrofuralum,nitrofuran,nitrofurane,nitrofurazan,nitrofurazonum,nitrofurol,nitrozone,otofural,otofuran,rivafurazon,rivopon,sanfuran,semioxamazide,vabrocid,vadrocid,yatrocin" "20388-5,87793-6"
"NTR" 19910 "Nitroxoline" "Fluoroquinolones" "J01XX07,QJ01XX07" "Other antibacterials" "Other antibacterials" "NA" "galinok,isinok,nibiol,nicene,nitroxlina,nitroxolin,nitroxolina,nitroxolinum,noxibiol,noxin" 1 "g" "25608-1,25723-8,32382-4,54181-3,55688-6"
"NOR" 4539 "Norfloxacin" "Fluoroquinolones" "J01MA06,QJ01MA06,QS01AE02,S01AE02" "Quinolone antibacterials" "Fluoroquinolones" "nor,norf,norflo,nx,nxn" "baccidal,barazan,chibroxin,chibroxine,chibroxol,fulgram,gonorcin,lexinor,nolicin,noracin,noraxin,norflo,norfloxacine,norfloxacino,norfloxacinum,norocin,noroxin,noroxine,norxacin,sebercim,uroxacin,utinor,zoroxin" 0.8 "g" "18956-3,366-5,367-3,368-1,369-9,3867-9,41504-2,7037-5"
"NOR-S" "Norfloxacin screening test" "Fluoroquinolones" "NA" "nor screen" "NA" "NA"
"NME" "Norfloxacin/metronidazole" "Fluoroquinolones" "J01RA14,QJ01RA14" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"NTI" "Norfloxacin/tinidazole" "Fluoroquinolones" "J01RA13,QJ01RA13" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"NIC" 9507 "Nicarbazin" "Other" "NA" "NA" "nicarb,nicarbasin,nicarbazine,nicarmix,nicoxin,nicrazin,nicrazine,nirazin" "NA"
"NIF" 71946 "Nifuroquine" "Fluoroquinolones,Quinolones" "NA" "NA" "abimasten,nifuroquina,nifuroquinum,quinaldofur" "NA"
"NFR" 9571062 "Nifurtoinol" "Nitrofurans" "J01XE02,QJ01XE02" "Other antibacterials" "Nitrofuran derivatives" "NA" "levantin,nifurmazol,nifurmazole,nifurmazolo,nifurmazolum,nifurtoinolo,nifurtoinolum,urfadin,urfadine,urfadyn" 0.16 "g" "NA"
"NTZ" 41684 "Nitazoxanide" "Other" "P01AX11" "NA" "alinia,benzamide,colufase,cryptaz,daxon,dexidex,heliton,kidonax,nitax,nitaxozanid,nitaxozanide,nitazox,nitazoxamide,nitazoxanid,nitazoxanida,nitazoxanidum,nitrazoxanide,pacovanton,paramix,phavic" 1 "g" "73595-1,73617-3,73640-5"
"NIT" 6604200 "Nitrofurantoin" "Nitrofurans" "J01XE01,QJ01XE01" "Other antibacterials" "Nitrofuran derivatives" "f,f/m,fd,ft,ni,nit,nit16,nitr,nitro" "alfuran,benkfuran,berkfuran,berkfurin,ceduran,chemiofuran,cistofuran,cyantin,cystit,dantafur,fuamed,furabid,furachel,furadantin,furadantine,furadantoin,furadoin,furadoine,furadonin,furadonine,furadoninum,furadontin,furalan,furaloid,furantoina,furatoin,furedan,furina,furobactina,furodantin,gerofuran,ituran,macpac,macrobid,macrodantin,macrodantina,macrofuran,macrofurin,nierofu,nifuraden,nifuradene,nifuradeno,nifuradenum,nifuradine,nifurantin,nifuretten,nitoin,nitrex,nitrofuradantin,nitrofurantoina,nitrofurantoine,nitrofurantoinum,novofuran,orafuran,oxafuradene,oxafurandene,oxifuradene,oxyfuradene,parfuran,phenurin,renafur,siraliden,trantoin,uerineks,urizept,urodin,urofuran,urofurin,urolisa,urolong,uvamin,welfurin,zoofurin" 0.2 "g" "18955-5,362-4,363-2,364-0,365-7,3860-4,7036-7"
"NIZ" 5447130 "Nitrofurazone" "Nitrofurans" "NA" "nitfur" "acutol,aldomycin,alfucin,amifur,babrocid,becafurazone,biofuracina,biofurea,chemofuran,chixin,cocafurin,coxistat,dermofural,dymazone,dynazone,eldezol,fedacin,flavazone,fracine,furacilin,furacilinum,furacillin,furacin,furacine,furacinetten,furacoccid,furacort,furacycline,furaderm,furagent,furalcyn,furaldon,furalone,furametral,furaplast,furaseptyl,furaskin,furatsilin,furaziline,furazin,furazina,furazyme,furesol,furosem,fuvacillin,hemofuran,hydrazinecarboxamide,ibiofural,mammex,mastofuran,monafuracin,monafuracis,monofuracin,nefco,nifucin,nifurid,nifuzon,nitrofural,nitrofuralum,nitrofuran,nitrofurane,nitrofurazan,nitrofurazonum,nitrofurol,nitrozone,otofural,otofuran,rivafurazon,rivopon,sanfuran,semioxamazide,vabrocid,vadrocid,yatrocin" "20388-5,87793-6"
"NTR" 19910 "Nitroxoline" "Fluoroquinolones,Quinolones" "J01XX07,QJ01XX07" "Other antibacterials" "Other antibacterials" "NA" "galinok,isinok,nibiol,nicene,nitroxlina,nitroxolin,nitroxolina,nitroxolinum,noxibiol,noxin" 1 "g" "25608-1,25723-8,32382-4,54181-3,55688-6"
"NOR" 4539 "Norfloxacin" "Fluoroquinolones,Quinolones" "J01MA06,QJ01MA06,QS01AE02,S01AE02" "Quinolone antibacterials" "Fluoroquinolones" "nor,norf,norflo,nx,nxn" "baccidal,barazan,chibroxin,chibroxine,chibroxol,fulgram,gonorcin,lexinor,nolicin,noracin,noraxin,norflo,norfloxacine,norfloxacino,norfloxacinum,norocin,noroxin,noroxine,norxacin,sebercim,uroxacin,utinor,zoroxin" 0.8 "g" "18956-3,366-5,367-3,368-1,369-9,3867-9,41504-2,7037-5"
"NOR-S" "Norfloxacin screening test" "Fluoroquinolones,Quinolones" "NA" "nor screen" "NA" "NA"
"NME" "Norfloxacin/metronidazole" "Fluoroquinolones,Quinolones" "J01RA14,QJ01RA14" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"NTI" "Norfloxacin/tinidazole" "Fluoroquinolones,Quinolones" "J01RA13,QJ01RA13" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"NVA" 10419027 "Norvancomycin" "Glycopeptides" "NA" "NA" "NA" "NA"
"NOV" 54675769 "Novobiocin" "Other antibacterials" "QJ01XX95" "novo,novobi" "albadry,albamix,albamycin,biotexin,cardelmycin,cardelmycinsalt,cathocin,cathomycin,inabiocin,novobiocina,novobiocine,novobiocinsalt,novobiocinum,robiocina,sirbiocina,spheromycin,stilbiocina,streptonivicin,streptonivicinsalt,vulcamicina,vulcamycin,vulkamycin" "17378-1,18957-1,370-7,371-5,372-3,373-1,41706-3"
"NYS" 6433272 "Nystatin" "Antifungals/antimycotics" "A07AA02,D01AA01,G01AA01,QA07AA02,QD01AA01,QG01AA01" "nyst,nystan" "biofanal,diastatin,herniocid,moronal,myconystatin,mycostatin,mykostatyna,nilstat,nistatin,nistatina,nyotran,nystan,nystatyna,nystavescent,nystex" 1.5 "MU" "10697-1,10698-9,18958-9,35824-2,55689-4"
"OFX" 4583 "Ofloxacin" "Fluoroquinolones" "J01MA01,QJ01MA01,QS01AE01,QS02AA16,S01AE01,S02AA16" "Quinolone antibacterials" "Fluoroquinolones" "of,ofl,oflo,ofloxa,ofx" "exocin,exocine,flobacin,floxil,floxin,monoflocet,oflocet,ofloxacina,ofloxacine,ofloxacino,ofloxacinum,ofloxaxin,oxaldin,tarivid,visiren,zanocin" 0.4 "g" 0.4 "g" "18959-7,20384-4,23948-3,25264-3,374-9,375-6,376-4,377-2,3877-8,41408-6,41409-4,41410-2,42653-6,7038-3,72168-8"
"OOR" "Ofloxacin/ornidazole" "Fluoroquinolones" "J01RA09,QJ01RA09" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"OLE" 72493 "Oleandomycin" "Macrolides/lincosamides" "J01FA05,QJ01FA05" "Macrolides, lincosamides and streptogramins" "Macrolides" "oleand" "amimycin,landomycin,matromycin,oleandomicina,oleandomycine,oleandomycinum,romicil" 1 "g" "18960-5,378-0,379-8,380-6,381-4,55690-2"
"NOV" 54675769 "Novobiocin" "Other" "QJ01XX95" "novo,novobi" "albadry,albamix,albamycin,biotexin,cardelmycin,cardelmycinsalt,cathocin,cathomycin,inabiocin,novobiocina,novobiocine,novobiocinsalt,novobiocinum,robiocina,sirbiocina,spheromycin,stilbiocina,streptonivicin,streptonivicinsalt,vulcamicina,vulcamycin,vulkamycin" "17378-1,18957-1,370-7,371-5,372-3,373-1,41706-3"
"NYS" 6433272 "Nystatin" "Antifungals" "A07AA02,D01AA01,G01AA01,QA07AA02,QD01AA01,QG01AA01" "nyst,nystan" "biofanal,diastatin,herniocid,moronal,myconystatin,mycostatin,mykostatyna,nilstat,nistatin,nistatina,nyotran,nystan,nystatyna,nystavescent,nystex" 1.5 "MU" "10697-1,10698-9,18958-9,35824-2,55689-4"
"OFX" 4583 "Ofloxacin" "Fluoroquinolones,Quinolones" "J01MA01,QJ01MA01,QS01AE01,QS02AA16,S01AE01,S02AA16" "Quinolone antibacterials" "Fluoroquinolones" "of,ofl,oflo,ofloxa,ofx" "exocin,exocine,flobacin,floxil,floxin,monoflocet,oflocet,ofloxacina,ofloxacine,ofloxacino,ofloxacinum,ofloxaxin,oxaldin,tarivid,visiren,zanocin" 0.4 "g" 0.4 "g" "18959-7,20384-4,23948-3,25264-3,374-9,375-6,376-4,377-2,3877-8,41408-6,41409-4,41410-2,42653-6,7038-3,72168-8"
"OOR" "Ofloxacin/ornidazole" "Fluoroquinolones,Quinolones" "J01RA09,QJ01RA09" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"OLE" 72493 "Oleandomycin" "Macrolides" "J01FA05,QJ01FA05" "Macrolides, lincosamides and streptogramins" "Macrolides" "oleand" "amimycin,landomycin,matromycin,oleandomicina,oleandomycine,oleandomycinum,romicil" 1 "g" "18960-5,378-0,379-8,380-6,381-4,55690-2"
"OMC" 54697325 "Omadacycline" "Tetracyclines" "J01AA15,QJ01AA15" "NA" "amadacycline" 0.3 "g" 0.1 "g" "73594-4,73616-5,73639-7"
"OPT" 87880 "Optochin" "Other antibacterials" "NA" "NA" "aflukin,auriquin,biquinate,chinidin,chinidine,chinimetten,chinin,chinine,conchinin,conchinine,conquinine,dentojel,dihydrochinidin,dihydroquinidine,dihydroquinine,hydroconchinine,hydroconquinine,hydroquinidine,kinidin,numoquin,optochine,optoquine,pitayine,qualaquin,quinaglute,quinicardine,quinidex,quinidine,quiniduran,quinindine,quinine,quinineanhydrous,quinora,quinsan,rezquin" "100055-3,73665-2"
"ORB" 60605 "Orbifloxacin" "Fluoroquinolones" "QJ01MA95" "orbifl" "orbax" "35825-9,35826-7,35827-5"
"ORI" 16136912 "Oritavancin" "Glycopeptides" "J01XA05,QJ01XA05" "Other antibacterials" "Glycopeptide antibacterials" "orit,oritav" "NA" "41707-1,41708-9,41709-7,41736-0"
"ORS" "Ormetroprim/sulfamethoxazole" "Other antibacterials" "NA" "NA" "NA" "73593-6,73615-7,73638-9"
"ORN" 28061 "Ornidazole" "Other antibacterials" "G01AF06,J01XD03,P01AB03,QG01AF06,QJ01XD03,QP51AA03" "Other antibacterials" "Imidazole derivatives" "NA" "levornidazole,madelen,ornidal,ornidazolum,tiberal" 1.5 "g" 1 "g" "55691-0,55692-8,55693-6,55694-4"
"OTE" 77050711 "Oteseconazole" "Antifungals/antimycotics" "J02AC06,QJ02AC06" "Antimycotics for systemic use" "Triazole derivatives" "NA" "quilseconazole,vivijoa" 21 "mg" "NA"
"OXA" 6196 "Oxacillin" "Beta-lactams/penicillins" "J01CF04,QJ01CF04,QJ51CF04" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "ox,oxa,oxac,oxacil,oxal,oxs" "bactocill,bristopen,cryptocillin,micropenin,ossacillina,oxabel,oxabelsalt,oxacilina,oxacillinanhydrous,oxacilline,oxacillinhydrate,oxacillinsalt,oxacillinum,oxazocillin,oxazocilline,penstapho,prostaphlin,prostaphlyn,resistopen,stapenor" 2 "g" 2 "g" "18961-3,25265-0,382-2,383-0,384-8,385-5,3882-8,7039-1"
"OXA-S" "Oxacillin screening test" "Beta-lactams/penicillins" "NA" "oxa screen" "NA" "NA"
"OPT" 87880 "Optochin" "Other" "NA" "NA" "aflukin,auriquin,biquinate,chinidin,chinidine,chinimetten,chinin,chinine,conchinin,conchinine,conquinine,dentojel,dihydrochinidin,dihydroquinidine,dihydroquinine,hydroconchinine,hydroconquinine,hydroquinidine,kinidin,numoquin,optochine,optoquine,pitayine,qualaquin,quinaglute,quinicardine,quinidex,quinidine,quiniduran,quinindine,quinine,quinineanhydrous,quinora,quinsan,rezquin" "100055-3,73665-2"
"ORB" 60605 "Orbifloxacin" "Fluoroquinolones,Quinolones" "QJ01MA95" "orbifl" "orbax" "35825-9,35826-7,35827-5"
"ORI" 16136912 "Oritavancin" "Lipoglycopeptides,Glycopeptides" "J01XA05,QJ01XA05" "Other antibacterials" "Glycopeptide antibacterials" "orit,oritav" "NA" "41707-1,41708-9,41709-7,41736-0"
"ORS" "Ormetroprim/sulfamethoxazole" "Trimethoprims,Sulfonamides" "NA" "NA" "NA" "73593-6,73615-7,73638-9"
"ORN" 28061 "Ornidazole" "Other" "G01AF06,J01XD03,P01AB03,QG01AF06,QJ01XD03,QP51AA03" "Other antibacterials" "Imidazole derivatives" "NA" "levornidazole,madelen,ornidal,ornidazolum,tiberal" 1.5 "g" 1 "g" "55691-0,55692-8,55693-6,55694-4"
"OTE" 77050711 "Oteseconazole" "Antifungals" "J02AC06,QJ02AC06" "Antimycotics for systemic use" "Triazole derivatives" "NA" "quilseconazole,vivijoa" 21 "mg" "NA"
"OXA" 6196 "Oxacillin" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "J01CF04,QJ01CF04,QJ51CF04" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "ox,oxa,oxac,oxacil,oxal,oxs" "bactocill,bristopen,cryptocillin,micropenin,ossacillina,oxabel,oxabelsalt,oxacilina,oxacillinanhydrous,oxacilline,oxacillinhydrate,oxacillinsalt,oxacillinum,oxazocillin,oxazocilline,penstapho,prostaphlin,prostaphlyn,resistopen,stapenor" 2 "g" 2 "g" "18961-3,25265-0,382-2,383-0,384-8,385-5,3882-8,7039-1"
"OXA-S" "Oxacillin screening test" "Isoxazolylpenicillins,Penicillins,Beta-lactams" "NA" "oxa screen" "NA" "NA"
"OXO" 4628 "Oxolinic acid" "Quinolones" "J01MB05,QJ01MB05" "Quinolone antibacterials" "Other quinolones" "oxoaci" "aqualinic,cistopax,dioxacin,emyrenil,gramurin,inoxyl,nidantin,oksaren,orthurine,ossian,oxoboi,oxolinic,pietil,prodoxal,prodoxol,starner,tiurasin,ultibid,urinox,uritrate,urotrate,uroxol,utibid" 1 "g" "NA"
"OXY" 54675779 "Oxytetracycline" "Tetracyclines" "A01AB25,D06AA03,G01AA07,J01AA06,QA01AB25,QD06AA03,QG01AA07,QG51AA01,QJ01AA06,QJ51AA06,QS01AA04,S01AA04" "Tetracyclines" "Tetracyclines" "oxytet" "achromycin,actisite,adamycin,artomycin,berkmycen,biostat,bristacycline,cancycline,cyclopar,dabicycline,diacycine,dumocyclin,embryostat,fanterrin,galsenomycin,geomycin,geotilin,hostacycline,hydroxytetracyclinum,lenocycline,macocyn,medamycin,mephacyclin,nitox,oksisyklin,ossitetraciclina,oxitetraciclina,oxitetracyclin,oxitetracycline,oxitetracyclinum,oxymycin,oxypam,oxyterracin,oxyterracine,oxyterracyne,oxytetracid,oxytetracyclin,oxytetracyclinum,paltet,partrex,pennox,piracaps,proteroxyna,qidtet,quadracycline,quatrex,remicyclin,retet,ricycline,riomitsin,ryomycin,solkaciclina,stevacin,stilciclina,subamycin,sumycin,supramycin,sustamycin,tarocyn,tarosin,tefilin,teline,telotrex,teravit,terrafungine,terramitsin,terramycine,tetrabakat,tetrabid,tetrablet,tetracaps,tetracompren,tetrakap,tetralution,tetramavan,tetramed,tetran,tetrosol,topicycline,triphacyclin,unicin,ursocyclin,ursocycline,vetquamycin" 1 "g" 1 "g" "17396-3,18962-1,25266-8,386-3,387-1,388-9,389-7,55699-3,87595-5"
"OZN" "Ozenoxacin" "D06AX14,QD06AX14" "NA" "NA" "NA"
"OZN" "Ozenoxacin" "Quinolones" "D06AX14,QD06AX14" "NA" "NA" "NA"
"PAS" 4649 "P-aminosalicylic acid" "Antimycobacterials" "NA" "pasraa" "NA" "NA"
"PAN" 72015 "Panipenem" "Carbapenems" "NA" "NA" "carbenin,panipenemum,penipanem" "100056-1,53823-1"
"PAR" 165580 "Paromomycin" "Other antibacterials" "A07AA06,QA07AA06,QJ01GB92" "NA" "aminosidin,amminosidin,crestomycin,estomycin,gabbromycin,gabromycin,humatin,humycin,hydroxymycin,monomycin,paramomycin,paromomicina,paromomycine,paromomycinum,paucimycin,paucimycinum" 3 "g" "51719-3,53824-9,55700-9,55701-7,55702-5"
"PAZ" 65957 "Pazufloxacin" "Fluoroquinolones" "J01MA18,QJ01MA18" "Quinolone antibacterials" "Fluoroquinolones" "NA" "pazufloxacine,pazufloxacino,pazufloxacinum" 1 "g" "NA"
"PEF" 51081 "Pefloxacin" "Fluoroquinolones" "J01MA03,QJ01MA03" "Quinolone antibacterials" "Fluoroquinolones" "pefl,perflo" "labocton,pefbid,pefloxacine,pefloxacinium,pefloxacino,pefloxacinum,pefocin,pefran,pelox" 0.8 "g" 0.8 "g" "18963-9,35828-3,390-5,3906-5,7040-9"
"PEF-S" "Pefloxacin screening test" "Fluoroquinolones" "NA" "pef screen" "NA" "NA"
"PNM" 10250769 "Penamecillin" "Beta-lactams/penicillins" "J01CE06,QJ01CE06" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "havapen,hydroxymethyl,penamecilina,penamecillina,penamecilline,penamecillinum" 1.05 "g" "NA"
"PNO" "Penicillin/novobiocin" "Beta-lactams/penicillins" "NA" "pennov" "NA" "35872-1,35873-9,35874-7"
"PSU" "Penicillin/sulbactam" "Beta-lactams/penicillins" "NA" "NA" "NA" "NA"
"PAN" 72015 "Panipenem" "Carbapenems,Beta-lactams" "NA" "NA" "carbenin,panipenemum,penipanem" "100056-1,53823-1"
"PAR" 165580 "Paromomycin" "Other" "A07AA06,QA07AA06,QJ01GB92" "NA" "aminosidin,amminosidin,crestomycin,estomycin,gabbromycin,gabromycin,humatin,humycin,hydroxymycin,monomycin,paramomycin,paromomicina,paromomycine,paromomycinum,paucimycin,paucimycinum" 3 "g" "51719-3,53824-9,55700-9,55701-7,55702-5"
"PAZ" 65957 "Pazufloxacin" "Fluoroquinolones,Quinolones" "J01MA18,QJ01MA18" "Quinolone antibacterials" "Fluoroquinolones" "NA" "pazufloxacine,pazufloxacino,pazufloxacinum" 1 "g" "NA"
"PEF" 51081 "Pefloxacin" "Fluoroquinolones,Quinolones" "J01MA03,QJ01MA03" "Quinolone antibacterials" "Fluoroquinolones" "pefl,perflo" "labocton,pefbid,pefloxacine,pefloxacinium,pefloxacino,pefloxacinum,pefocin,pefran,pelox" 0.8 "g" 0.8 "g" "18963-9,35828-3,390-5,3906-5,7040-9"
"PEF-S" "Pefloxacin screening test" "Fluoroquinolones,Quinolones" "NA" "pef screen" "NA" "NA"
"PNM" 10250769 "Penamecillin" "Penicillins,Beta-lactams" "J01CE06,QJ01CE06" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "havapen,hydroxymethyl,penamecilina,penamecillina,penamecilline,penamecillinum" 1.05 "g" "NA"
"PNO" "Penicillin/novobiocin" "Penicillins,Beta-lactams" "NA" "pennov" "NA" "35872-1,35873-9,35874-7"
"PSU" "Penicillin/sulbactam" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "NA" "NA" "NA" "NA"
"PNM1" 54686187 "Penimepicycline" "Tetracyclines" "J01AA10,QJ01AA10" "Tetracyclines" "Tetracyclines" "NA" "criseocil,duamine,geotricyn,hydrocycline,penetracyne,penimepiciclina,penimepicyclinum" "NA"
"PIM" 65453 "Pentisomicin" "Aminoglycosides" "NA" "NA" "mutamicin,mutamycin,pentisomicina,pentisomicine,pentisomicinum" "NA"
"PTZ" 55250256 "Pentizidone" "Other antibacterials" "NA" "NA" "pentizidona,pentizidonum" "NA"
"PEX" 16132253 "Pexiganan" "Other antibacterials" "NA" "NA" "cytolex,mangainin" "NA"
"PHE" 272833 "Pheneticillin" "Beta-lactams/penicillins" "J01CE05,QJ01CE05" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "fene" "alfacillin,alticina,antibiocin,arcacil,arcasin,astracillin,bendralan,beromycin,brocsil,broxil,chemipen,cliacil,darcil,feneticilina,feneticillin,feneticillina,feneticilline,fenocin,icipen,isocillin,ispenoral,kavepenin,maxipen,optipen,oralopen,orapen,ospeneff,pedipen,penagen,pencompren,penemve,peniplus,penova,pensig,penvikal,phenethicilin,phenethicillin,phenethicillinum,pheneticilline,pheneticillinum,primcillin,priospen,roscopenin,semopen,suspen,synapen,syncillin,synerpenin,synthecillin,synthecilline,synthepen,triospen,vamosyn,veetids,vepen" 1 "g" "NA"
"PHN" 6869 "Phenoxymethylpenicillin" "Beta-lactams/penicillins" "J01CE02,QJ01CE02" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "fepe,peni v,penicillin v,phepen,pnv,pv" "apopen,calcipen,fenacilin,fenospen,meropenin,oracillin,oracilline,oratren,orocillin,ospen,phenocillin,phenomycilline,phenopenicillin,rocilin,stabicillin,vebecillin" 2 "g" "NA"
"PMR" 5284447 "Pimaricin" "Antifungals/antimycotics" "NA" "natamycin" "delvocid,delvolan,delvopos,mycophyt,myprozine,natacyn,natafucin,natajen,natamatrix,natamax,natamicina,natamycin,natamycine,natamycinum,pimafucin,pimaracin,pimaricine,pimarizin,synogil,tennecetin" "NA"
"PTZ" 55250256 "Pentizidone" "Other" "NA" "NA" "pentizidona,pentizidonum" "NA"
"PEX" 16132253 "Pexiganan" "Other" "NA" "NA" "cytolex,mangainin" "NA"
"PHE" 272833 "Pheneticillin" "Penicillins,Beta-lactams" "J01CE05,QJ01CE05" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "fene" "alfacillin,alticina,antibiocin,arcacil,arcasin,astracillin,bendralan,beromycin,brocsil,broxil,chemipen,cliacil,darcil,feneticilina,feneticillin,feneticillina,feneticilline,fenocin,icipen,isocillin,ispenoral,kavepenin,maxipen,optipen,oralopen,orapen,ospeneff,pedipen,penagen,pencompren,penemve,peniplus,penova,pensig,penvikal,phenethicilin,phenethicillin,phenethicillinum,pheneticilline,pheneticillinum,primcillin,priospen,roscopenin,semopen,suspen,synapen,syncillin,synerpenin,synthecillin,synthecilline,synthepen,triospen,vamosyn,veetids,vepen" 1 "g" "NA"
"PHN" 6869 "Phenoxymethylpenicillin" "Penicillins,Beta-lactams" "J01CE02,QJ01CE02" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "fepe,peni v,penicillin v,phepen,pnv,pv" "apopen,calcipen,fenacilin,fenospen,meropenin,oracillin,oracilline,oratren,orocillin,ospen,phenocillin,phenomycilline,phenopenicillin,rocilin,stabicillin,vebecillin" 2 "g" "NA"
"PMR" 5284447 "Pimaricin" "Antifungals" "NA" "natamycin" "delvocid,delvolan,delvopos,mycophyt,myprozine,natacyn,natafucin,natajen,natamatrix,natamax,natamicina,natamycin,natamycine,natamycinum,pimafucin,pimaracin,pimaricine,pimarizin,synogil,tennecetin" "NA"
"PPA" 4831 "Pipemidic acid" "Quinolones" "J01MB04,QJ01MB04" "Quinolone antibacterials" "Other quinolones" "pipaci,pipz,pizu" "deblaston,dolcol,filtrax,karunomazin,memento,nuril,palin,pipedac,pipemid,pipemidate,pipemidic,pipemidicacid,pipram,pipurin,tractur,uromidin,urosten,uroval" 0.8 "g" "NA"
"PIP" 43672 "Piperacillin" "Beta-lactams/penicillins" "J01CA12,QJ01CA12" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "pi,pip,pipc,pipe,pipera,pp" "penmalin,pentcillin,peperacillin,peracin,piperacilina,piperacillina,piperacilline,piperacillinhydrate,piperacillinum,pipercillin,pipracil,tazocin" 14 "g" "101490-1,101491-9,18969-6,18970-4,25268-4,3972-7,407-7,408-5,409-3,410-1,411-9,412-7,413-5,414-3,54197-9,54198-7,54199-5,55704-1,7043-3,7044-1"
"PIS" "Piperacillin/sulbactam" "Beta-lactams/penicillins" "NA" "NA" "NA" 14 "g" "54197-9,54198-7,54199-5,55704-1"
"TZP" 461573 "Piperacillin/tazobactam" "Beta-lactams/penicillins" "J01CR05,QJ01CR05" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "p/t,piptaz,piptazo,pit,pita,pt,ptc,ptz,tzp" "piptazobactam,tazonam,zobactin,zosyn" 14 "g" "101491-9,18970-4,411-9,412-7,413-5,414-3,7044-1"
"PRC" 71978 "Piridicillin" "Beta-lactams/penicillins" "NA" "NA" "NA" "NA"
"PRL" 157385 "Pirlimycin" "Macrolides/lincosamides" "QJ51FF90" "pirlim" "pirlimycina,pirlimycine,pirlimycinum,pirsue" "35829-1,35830-9,35831-7"
"PIP" 43672 "Piperacillin" "Ureidopenicillins,Penicillins,Beta-lactams" "J01CA12,QJ01CA12" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "pi,pip,pipc,pipe,pipera,pp" "penmalin,pentcillin,peperacillin,peracin,piperacilina,piperacillina,piperacilline,piperacillinhydrate,piperacillinum,pipercillin,pipracil,tazocin" 14 "g" "101490-1,101491-9,18969-6,18970-4,25268-4,3972-7,407-7,408-5,409-3,410-1,411-9,412-7,413-5,414-3,54197-9,54198-7,54199-5,55704-1,7043-3,7044-1"
"PIS" "Piperacillin/sulbactam" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "NA" "NA" "NA" 14 "g" "54197-9,54198-7,54199-5,55704-1"
"TZP" 461573 "Piperacillin/tazobactam" "Ureidopenicillins,Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR05,QJ01CR05" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "p/t,piptaz,piptazo,pit,pita,pt,ptc,ptz,tzp" "piptazobactam,tazonam,zobactin,zosyn" 14 "g" "101491-9,18970-4,411-9,412-7,413-5,414-3,7044-1"
"PRC" 71978 "Piridicillin" "Penicillins,Beta-lactams" "NA" "NA" "NA" "NA"
"PRL" 157385 "Pirlimycin" "Lincosamides,Macrolides" "QJ51FF90" "pirlim" "pirlimycina,pirlimycine,pirlimycinum,pirsue" "35829-1,35830-9,35831-7"
"PIR" 4855 "Piromidic acid" "Quinolones" "J01MB03,QJ01MB03" "Quinolone antibacterials" "Other quinolones" "NA" "bactramyl,enterol,gastrurol,panacid,pirodal,piromidate,reelon,septural,urisept,uropir,zaomeal" 2 "g" "NA"
"PVM" 33478 "Pivampicillin" "Beta-lactams/penicillins" "J01CA02,QJ01CA02" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "pivaloylampicillin,pivampicilina,pivampicilline,pivampicillinum" 1.05 "g" "18971-2,415-0,416-8,417-6,418-4"
"PME" 115163 "Pivmecillinam" "Beta-lactams/penicillins" "J01CA08,QJ01CA08" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "pivmec" "coactabs,melysin,pivamdinocillin,pivmecilinamo,pivmecillinamum,selexid" 0.6 "g" "NA"
"PVM" 33478 "Pivampicillin" "Penicillins,Beta-lactams" "J01CA02,QJ01CA02" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "pivaloylampicillin,pivampicilina,pivampicilline,pivampicillinum" 1.05 "g" "18971-2,415-0,416-8,417-6,418-4"
"PME" 115163 "Pivmecillinam" "Penicillins,Beta-lactams" "J01CA08,QJ01CA08" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "pivmec" "coactabs,melysin,pivamdinocillin,pivmecilinamo,pivmecillinamum,selexid" 0.6 "g" "NA"
"PLZ" 42613186 "Plazomicin" "Aminoglycosides" "J01GB14,QJ01GB14" "NA" "zemdri" "73592-8,73614-0,73637-1,92024-9,94719-2"
"PLB" 49800004 "Polymyxin B" "Polymyxins" "A07AA05,J01XB02,QA07AA05,QJ01XB02,QJ51XB02,QS01AA18,QS02AA11,QS03AA03,S01AA18,S02AA11,S03AA03" "Other antibacterials" "Polymyxins" "pb,pol,polb,poly,poly b,polyb,polymixin,polymixin b" "aerosporin" 3 "MU" 0.15 "g" "17473-0,18972-0,25269-2,35832-5,419-2,420-0,421-8,422-6"
"POP" "Polymyxin B/polysorbate 80" "Polymyxins" "NA" "NA" "NA" "NA"
"POS" 468595 "Posaconazole" "Antifungals/antimycotics" "J02AC04,QJ02AC04" "Antimycotics for systemic use" "Triazole derivatives" "posa,posaco" "noxafil,schering,spriafil" 0.3 "g" 0.3 "g" "53731-6,54186-2,54187-0,54188-8,54189-6,80545-7"
"PRA" 9802884 "Pradofloxacin" "Fluoroquinolones" "QJ01MA97" "NA" "pudofloxacin,veraflox" "76148-6,87800-9"
"PRX" 71455 "Premafloxacin" "Fluoroquinolones" "NA" "premaf" "premafloxacine,premafloxacino" "73591-0,73613-2,73636-3"
"POS" 468595 "Posaconazole" "Antifungals" "J02AC04,QJ02AC04" "Antimycotics for systemic use" "Triazole derivatives" "posa,posaco" "noxafil,schering,spriafil" 0.3 "g" 0.3 "g" "53731-6,54186-2,54187-0,54188-8,54189-6,80545-7"
"PRA" 9802884 "Pradofloxacin" "Fluoroquinolones,Quinolones" "QJ01MA97" "NA" "pudofloxacin,veraflox" "76148-6,87800-9"
"PRX" 71455 "Premafloxacin" "Fluoroquinolones,Quinolones" "NA" "premaf" "premafloxacine,premafloxacino" "73591-0,73613-2,73636-3"
"PMD" 456199 "Pretomanid" "Antimycobacterials" "J04AK08,QJ04AK08" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "NA" "NA" 0.2 "g" "93850-6"
"PRM" 6446787 "Primycin" "Macrolides/lincosamides" "NA" "NA" "chinopricin,debrycin,primicina,primycine" "NA"
"PRI" 11979535 "Pristinamycin" "Macrolides/lincosamides" "J01FG01,QJ01FG01" "Macrolides, lincosamides and streptogramins" "Streptogramins" "pris,pristi" "eskalin,micamicina,mikamycin,mikamycine,mikamycinum,ostreogricina,ostreogrycin,ostreogrycine,ostreogrycinum,pristinamicina,pristinamycine,pristinamycinum,pyostacine,stafac,stafytracine,stajac,staphylomycin,stapyocine,starfac,virgimycin,virgimycine,virginiamicina,virginiamycin,virginiamycina,virginiamycinum" 2 "g" "32383-2,35833-3,35834-1,55709-0"
"PRB" 5903 "Procaine benzylpenicillin" "Beta-lactams/penicillins" "J01CE09,QJ01CE09,QJ51CE09" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "afsillin,aquacilina,aquacillin,aquasuspen,avloprocil,cilicaine,crysticillin,depocillin,despacilina,distaquaine,duphapen,duracillin,hostacillin,hydracillin,kabipenin,ledercillin,millicillin,mylipen,neoproc,nopcaine,parencillin,premocillin,procanodia,prostabillin,retardillin,sharcillin,vetspen,vitablend,wycillin" 0.6 "g" "NA"
"PRP" 92879 "Propicillin" "Beta-lactams/penicillins" "J01CE03,QJ01CE03" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "baycillin,propicilina,propicilline,propicillinum" 0.9 "g" "NA"
"PRM" 6446787 "Primycin" "Macrolides" "NA" "NA" "chinopricin,debrycin,primicina,primycine" "NA"
"PRI" 11979535 "Pristinamycin" "Streptogramins" "J01FG01,QJ01FG01" "Macrolides, lincosamides and streptogramins" "Streptogramins" "pris,pristi" "eskalin,micamicina,mikamycin,mikamycine,mikamycinum,ostreogricina,ostreogrycin,ostreogrycine,ostreogrycinum,pristinamicina,pristinamycine,pristinamycinum,pyostacine,stafac,stafytracine,stajac,staphylomycin,stapyocine,starfac,virgimycin,virgimycine,virginiamicina,virginiamycin,virginiamycina,virginiamycinum" 2 "g" "32383-2,35833-3,35834-1,55709-0"
"PRB" 5903 "Procaine benzylpenicillin" "Penicillins,Beta-lactams" "J01CE09,QJ01CE09,QJ51CE09" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "afsillin,aquacilina,aquacillin,aquasuspen,avloprocil,cilicaine,crysticillin,depocillin,despacilina,distaquaine,duphapen,duracillin,hostacillin,hydracillin,kabipenin,ledercillin,millicillin,mylipen,neoproc,nopcaine,parencillin,premocillin,procanodia,prostabillin,retardillin,sharcillin,vetspen,vitablend,wycillin" 0.6 "g" "NA"
"PRP" 92879 "Propicillin" "Penicillins,Beta-lactams" "J01CE03,QJ01CE03" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "NA" "baycillin,propicilina,propicilline,propicillinum" 0.9 "g" "NA"
"PKA" 9872451 "Propikacin" "Aminoglycosides" "NA" "NA" "propikacina,propikacine,propikacinum" "NA"
"PTH" 666418 "Protionamide" "Antimycobacterials" "J04AD01,QJ04AD01" "Drugs for treatment of tuberculosis" "Thiocarbamide derivatives" "prot" "ektebin,peteha,prothionamide,prothionamidum,protion,protionamid,protionamida,protionamidum,protionizina,tebeform,trevintix,tuberex" 0.75 "g" "NA"
"PRU" 65947 "Prulifloxacin" "Fluoroquinolones" "J01MA17,QJ01MA17" "Quinolone antibacterials" "Fluoroquinolones" "NA" "pruvel,quisnon,sword" 0.6 "g" "100058-7,76145-2"
"PRU" 65947 "Prulifloxacin" "Fluoroquinolones,Quinolones" "J01MA17,QJ01MA17" "Quinolone antibacterials" "Fluoroquinolones" "NA" "pruvel,quisnon,sword" 0.6 "g" "100058-7,76145-2"
"PZA" 1046 "Pyrazinamide" "Antimycobacterials" "J04AK01,QJ04AK01" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "pyra" "aldinamid,aldinamide,eprazin,farmizina,isopas,novamid,pezetamid,piraldina,pirazimida,pirazinamid,pirazinamida,pirazinamide,pirazinecarboxamide,pyrafat,pyrazide,pyrazinamdie,pyrazinamidum,pyrazineamide,pyrizinamide,rifafour,rozide,tebrazid,tisamid,unipyranamide" 1.5 "g" "11001-5,18973-8,20461-0,23632-3,25186-8,25229-6,25270-0,423-4,424-2,425-9,426-7,42935-7,55710-8,55711-6,56026-8,92242-7"
"QDA" 11979418 "Quinupristin/dalfopristin" "Macrolides/lincosamides" "QJ01FG02" "Macrolides, lincosamides and streptogramins" "Streptogramins" "q/d,qda,qida,quda,rp,syn,synerc" "synercid" "23640-6,23641-4,33334-4,35835-8,58712-1"
"RAC" 56052 "Ractopamine" "Other antibacterials" "NA" "NA" "bufenina,bufenine,buphenin,buphenine,bupheninum,luteonin,nilidrine,nylidrinum,optaflexx,paylean,prepar,ractopamina,ractopaminum,ritodrina,ritodrine,ritodrinium,tomax,utopar,yutopar" "NA"
"QDA" 11979418 "Quinupristin/dalfopristin" "Streptogramins" "QJ01FG02" "Macrolides, lincosamides and streptogramins" "Streptogramins" "q/d,qda,qida,quda,rp,syn,synerc" "synercid" "23640-6,23641-4,33334-4,35835-8,58712-1"
"RAC" 56052 "Ractopamine" "Other" "NA" "NA" "bufenina,bufenine,buphenin,buphenine,bupheninum,luteonin,nilidrine,nylidrinum,optaflexx,paylean,prepar,ractopamina,ractopaminum,ritodrina,ritodrine,ritodrinium,tomax,utopar,yutopar" "NA"
"RAM" 16132338 "Ramoplanin" "Glycopeptides" "NA" "ramopl" "NA" "41710-5,41711-3,41712-1,41737-8"
"RZM" 10993211 "Razupenem" "Carbapenems" "NA" "razupe" "NA" "73590-2,73612-4,73635-5"
"RTP" 6918462 "Retapamulin" "Other antibacterials" "D06AX13,QD06AX13" "Antibiotics for topical use" "Other antibiotics for topical use" "ret" "altabax,altargo,rebapamulin,retapamulina" "NA"
"RZM" 10993211 "Razupenem" "Carbapenems,Beta-lactams" "NA" "razupe" "NA" "73590-2,73612-4,73635-5"
"RTP" 6918462 "Retapamulin" "Other" "D06AX13,QD06AX13" "Antibiotics for topical use" "Other antibiotics for topical use" "ret" "altabax,altargo,rebapamulin,retapamulina" "NA"
"RZF" "Rezafungin" "Antifungals" "NA" "NA" "NA" "NA"
"RBC" 44631912 "Ribociclib" "Antifungals/antimycotics" "L01EF02,QL01EF02" "Antimycotics for systemic use" "Triazole derivatives" "ribo" "kisqali" 0.45 "g" "NA"
"RBC" 44631912 "Ribociclib" "Antifungals" "L01EF02,QL01EF02" "Antimycotics for systemic use" "Triazole derivatives" "ribo" "kisqali" 0.45 "g" "NA"
"RST" 33042 "Ribostamycin" "Aminoglycosides" "J01GB10,QJ01GB10" "Aminoglycoside antibacterials" "Other aminoglycosides" "NA" "exaluren,hetangmycin,ribastamin,ribostamicina,ribostamycine,ribostamycinum,vistamycin,xylostatin" 1 "g" "NA"
"RID1" 16659285 "Ridinilazole" "Other antibacterials" "NA" "NA" "ridinilazol" "NA"
"RIB" 135398743 "Rifabutin" "Antimycobacterials" "J04AB04,QJ04AB04" "Drugs for treatment of tuberculosis" "Antibiotics" "ansamy,rfb,rifb" "alfacid,ansamicin,ansamycins,ansatipin,ansatipine,assatipin,mycobutin,rifabutinum" 0.15 "g" "100699-8,16100-0,16386-5,16387-3,19149-4,20386-9,23630-7,24032-5,25199-1,25200-7,25201-5,42655-1,42656-9,54183-9,96113-6"
"RIF" 135398735 "Rifampicin" "Antimycobacterials" "J04AB02,QJ04AB02,QJ54AB02" "Drugs for treatment of tuberculosis" "Antibiotics" "rifa,rifamp" "abrifam,archidyn,arficin,arzide,benemicin,doloresum,eremfat,famcin,fenampicin,rifadin,rifadine,rifagen,rifaldazin,rifaldazine,rifaldin,rifam,rifamor,rifampicina,rifampicine,rifampicinum,rifampin,rifamsolin,rifapiam,rifaprodin,rifcin,rifinah,rifobac,rifoldin,rifoldine,riforal,rimactan,rimactane,rimactazid,rimactizid,rimazid,sinerdol,tubocin" 0.6 "g" 0.6 "g" "NA"
"REI" 135483893 "Rifampicin/ethambutol/isoniazid" "Antimycobacterials" "J04AM07,QJ04AM07" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "isonarif,rifamate,rifamazid" "NA"
"RFI" "Rifampicin/isoniazid" "Antimycobacterials" "J04AM02,QJ04AM02" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RPEI" "Rifampicin/pyrazinamide/ethambutol/isoniazid" "Antimycobacterials" "J04AM06,QJ04AM06" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RPI" "Rifampicin/pyrazinamide/isoniazid" "Antimycobacterials" "J04AM05,QJ04AM05" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RFM" 6324616 "Rifamycin" "Antimycobacterials" "A07AA13,D06AX15,J04AB03,QA07AA13,QD06AX15,QJ04AB03,QJ54AB03,QS01AA16,QS02AA12,S01AA16,S02AA12" "Drugs for treatment of tuberculosis" "Antibiotics" "rifmyc" "aemcolo,nacimycin,nancimycin,otofa,rifamastene,rifamicina,rifamycine,rifamycinum,rifocin,rifocyn,tuborin" 0.8 "g" 0.6 "g" "NA"
"RFP" 135403821 "Rifapentine" "Antimycobacterials" "J04AB05,QJ04AB05" "Drugs for treatment of tuberculosis" "Antibiotics" "rifp,rpt" "prifitin,priftin,rifapentin,rifapentina,rifapentinum" 0.11 "g" "100059-5,76627-9"
"RFX" 6436173 "Rifaximin" "Other antibacterials" "A07AA11,D06AX11,QA07AA11,QD06AX11,QG51AA06,QJ51XX01" "Intestinal antiinfectives" "Antibiotics" "NA" "fatroximin,flonorm,lormyx,lumenax,normix,rifacol,rifamixin,rifaxidin,rifaximina,rifaximine,rifaximinum,rifaxin,ritacol,spiraxin,xifaxan,xifaxsan" 0.6 "g" "73589-4,73611-6,73634-8"
"RIT" 65633 "Ritipenem" "Carbapenems" "NA" "NA" "ritipenemsalt" "NA"
"RIA" 163692 "Ritipenem acoxil" "Carbapenems" "NA" "NA" "penemac" "NA"
"ROK" 5282211 "Rokitamycin" "Macrolides/lincosamides" "J01FA12,QJ01FA12" "Macrolides, lincosamides and streptogramins" "Macrolides" "rokita" "propionylleucomycin,ricamycin,rokicid,rokital,rokitamicina,rokitamycine,rokitamycinum" 0.8 "g" "NA"
"RID1" 16659285 "Ridinilazole" "Other" "NA" "NA" "ridinilazol" "NA"
"RIB" 135398743 "Rifabutin" "Rifamycins,Antimycobacterials" "J04AB04,QJ04AB04" "Drugs for treatment of tuberculosis" "Antibiotics" "ansamy,rfb,rifb" "alfacid,ansamicin,ansamycins,ansatipin,ansatipine,assatipin,mycobutin,rifabutinum" 0.15 "g" "100699-8,16100-0,16386-5,16387-3,19149-4,20386-9,23630-7,24032-5,25199-1,25200-7,25201-5,42655-1,42656-9,54183-9,96113-6"
"RIF" 135398735 "Rifampicin" "Rifamycins,Antimycobacterials" "J04AB02,QJ04AB02,QJ54AB02" "Drugs for treatment of tuberculosis" "Antibiotics" "rifa,rifamp" "abrifam,archidyn,arficin,arzide,benemicin,doloresum,eremfat,famcin,fenampicin,rifadin,rifadine,rifagen,rifaldazin,rifaldazine,rifaldin,rifam,rifamor,rifampicina,rifampicine,rifampicinum,rifampin,rifamsolin,rifapiam,rifaprodin,rifcin,rifinah,rifobac,rifoldin,rifoldine,riforal,rimactan,rimactane,rimactazid,rimactizid,rimazid,sinerdol,tubocin" 0.6 "g" 0.6 "g" "NA"
"REI" 135483893 "Rifampicin/ethambutol/isoniazid" "Rifamycins,Antimycobacterials" "J04AM07,QJ04AM07" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "isonarif,rifamate,rifamazid" "NA"
"RFI" "Rifampicin/isoniazid" "Rifamycins,Antimycobacterials" "J04AM02,QJ04AM02" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RPEI" "Rifampicin/pyrazinamide/ethambutol/isoniazid" "Rifamycins,Antimycobacterials" "J04AM06,QJ04AM06" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RPI" "Rifampicin/pyrazinamide/isoniazid" "Rifamycins,Antimycobacterials" "J04AM05,QJ04AM05" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"RFM" 6324616 "Rifamycin" "Rifamycins,Antimycobacterials" "A07AA13,D06AX15,J04AB03,QA07AA13,QD06AX15,QJ04AB03,QJ54AB03,QS01AA16,QS02AA12,S01AA16,S02AA12" "Drugs for treatment of tuberculosis" "Antibiotics" "rifmyc" "aemcolo,nacimycin,nancimycin,otofa,rifamastene,rifamicina,rifamycine,rifamycinum,rifocin,rifocyn,tuborin" 0.8 "g" 0.6 "g" "NA"
"RFP" 135403821 "Rifapentine" "Rifamycins,Antimycobacterials" "J04AB05,QJ04AB05" "Drugs for treatment of tuberculosis" "Antibiotics" "rifp,rpt" "prifitin,priftin,rifapentin,rifapentina,rifapentinum" 0.11 "g" "100059-5,76627-9"
"RFX" 6436173 "Rifaximin" "Other" "A07AA11,D06AX11,QA07AA11,QD06AX11,QG51AA06,QJ51XX01" "Intestinal antiinfectives" "Antibiotics" "NA" "fatroximin,flonorm,lormyx,lumenax,normix,rifacol,rifamixin,rifaxidin,rifaximina,rifaximine,rifaximinum,rifaxin,ritacol,spiraxin,xifaxan,xifaxsan" 0.6 "g" "73589-4,73611-6,73634-8"
"RIT" 65633 "Ritipenem" "Carbapenems,Beta-lactams" "NA" "NA" "ritipenemsalt" "NA"
"RIA" 163692 "Ritipenem acoxil" "Carbapenems,Beta-lactams" "NA" "NA" "penemac" "NA"
"ROK" 5282211 "Rokitamycin" "Macrolides" "J01FA12,QJ01FA12" "Macrolides, lincosamides and streptogramins" "Macrolides" "rokita" "propionylleucomycin,ricamycin,rokicid,rokital,rokitamicina,rokitamycine,rokitamycinum" 0.8 "g" "NA"
"RLT" 54682938 "Rolitetracycline" "Tetracyclines" "J01AA09,QJ01AA09" "Tetracyclines" "Tetracyclines" "NA" "bristacin,colbiocin,kinteto,reverin,revrin,rolitetraciclina,rolitetracyclinum,solvocillin,superciclin,synotodecin,synterin,syntetrex,syntetrin,tetraverin,transcycline,velacicline,velacycline" 0.35 "g" "18976-1,435-8,436-6,437-4,438-2"
"ROS" 287180 "Rosoxacin" "Quinolones" "J01MB01,QJ01MB01" "Quinolone antibacterials" "Other quinolones" "NA" "acrosoxacin,eracine,eradacil,eradacin,eradicin,rosoxacine,rosoxacino,rosoxacinum,roxadyl,winoxacin,winuron" 0.3 "g" "18977-9,439-0,440-8,441-6,442-4,55713-2"
"RXT" "Roxithromycin" "Macrolides/lincosamides" "J01FA06,QJ01FA06" "Macrolides, lincosamides and streptogramins" "Macrolides" "roxi,roxith" "NA" 0.3 "g" "18978-7,443-2,444-0,445-7,446-5,7046-6"
"RFL" 58258 "Rufloxacin" "Fluoroquinolones" "J01MA10,QJ01MA10" "Quinolone antibacterials" "Fluoroquinolones" "NA" "monos,rufloxacine,rufloxacino,rufloxacinum,tebraxin,uroflox" 0.2 "g" "NA"
"SAL" 3085092 "Salinomycin" "Other antibacterials" "QP51BB01" "salino" "coxistac,procoxacin,salinomicina,salinomycine,salinomycinum" "35836-6,35837-4,35838-2,87593-0"
"SAR" 56208 "Sarafloxacin" "Fluoroquinolones" "QJ01MA98" "sarafl" "difloxacino,difloxacinum,difloxcine,sarafin,saraflox,sarafloxacine,sarafloxacino,sarafloxacinum" "73588-6,73610-8,73633-0"
"RXT" "Roxithromycin" "Macrolides" "J01FA06,QJ01FA06" "Macrolides, lincosamides and streptogramins" "Macrolides" "roxi,roxith" "NA" 0.3 "g" "18978-7,443-2,444-0,445-7,446-5,7046-6"
"RFL" 58258 "Rufloxacin" "Fluoroquinolones,Quinolones" "J01MA10,QJ01MA10" "Quinolone antibacterials" "Fluoroquinolones" "NA" "monos,rufloxacine,rufloxacino,rufloxacinum,tebraxin,uroflox" 0.2 "g" "NA"
"SAL" 3085092 "Salinomycin" "Other" "QP51BB01" "salino" "coxistac,procoxacin,salinomicina,salinomycine,salinomycinum" "35836-6,35837-4,35838-2,87593-0"
"SAR" 56208 "Sarafloxacin" "Fluoroquinolones,Quinolones" "QJ01MA98" "sarafl" "difloxacino,difloxacinum,difloxcine,sarafin,saraflox,sarafloxacine,sarafloxacino,sarafloxacinum" "73588-6,73610-8,73633-0"
"SRC" 54681908 "Sarecycline" "Tetracyclines" "J01AA14,QJ01AA14" "Tetracyclines" "Tetracyclines" "NA" "sareciclina,seysara" 0.1 "g" "NA"
"SRX" 9933415 "Sarmoxicillin" "Beta-lactams/penicillins" "NA" "NA" "sarmoxillina,sarmoxilline,sarmoxillinum" "NA"
"SEC" 71815 "Secnidazole" "Other antibacterials" "P01AB07" "NA" "flagentyl,secnidal,secnidazolum,secnil,sindose,solosec" 2 "g" "NA"
"SRX" 9933415 "Sarmoxicillin" "Penicillins,Beta-lactams" "NA" "NA" "sarmoxillina,sarmoxilline,sarmoxillinum" "NA"
"SEC" 71815 "Secnidazole" "Other" "P01AB07" "NA" "flagentyl,secnidal,secnidazolum,secnil,sindose,solosec" 2 "g" "NA"
"SIS" 36119 "Sisomicin" "Aminoglycosides" "J01GB08,QJ01GB08" "Aminoglycoside antibacterials" "Other aminoglycosides" "siso,sisomy" "rickamicin,salvamina,sisomicina,sisomicine,sisomicinum,sisomin,sisomycin,sissomicin,sizomycin" 0.24 "g" "18979-5,447-3,448-1,449-9,450-7,55714-0"
"SIT" 461399 "Sitafloxacin" "Fluoroquinolones" "J01MA21,QJ01MA21" "sitafl" "gracevit" 0.1 "g" "NA"
"SIT" 461399 "Sitafloxacin" "Fluoroquinolones,Quinolones" "J01MA21,QJ01MA21" "sitafl" "gracevit" 0.1 "g" "NA"
"SDA" 2724368 "Sodium aminosalicylate" "Antimycobacterials" "J04AA02,QJ04AA02" "Drugs for treatment of tuberculosis" "Aminosalicylic acid and derivatives" "NA" "bactylan,lepasen,monopas,tubersan" 14 "g" 14 "g" "NA"
"SOL" 25242512 "Solithromycin" "Macrolides/lincosamides" "J01FA16,QJ01FA16" "NA" "solithera" "73587-8,73609-0,73632-2"
"SPX" 60464 "Sparfloxacin" "Fluoroquinolones" "J01MA09,QJ01MA09" "Quinolone antibacterials" "Fluoroquinolones" "spa,spar,sparfl" "esparfloxacino,parox,spara,sparfloxacine,sparfloxacinum,zagam" 0.2 "g" "20397-6,23610-9,23628-1,35839-0,7047-4"
"SPT" 15541 "Spectinomycin" "Other antibacterials" "J01XX04,QJ01XX04" "Other antibacterials" "Other antibacterials" "sc,spe,spec,spect,spt" "actinospectacina,adspec,espectinomicina,prospec,spectam,spectinomicina,spectinomycine,spectinomycinhydrate,spectinomycinum,spectogard,stanilo,togamycin,trobicin" 3 "g" "18980-3,35840-8,451-5,452-3,453-1,454-9"
"SPI" 6419898 "Spiramycin" "Macrolides/lincosamides" "J01FA02,QJ01FA02,QJ51FA02" "Macrolides, lincosamides and streptogramins" "Macrolides" "sipram,spir,spiram" "formacidine" 3 "g" "18981-1,455-6,456-4,457-2,458-0,55715-7"
"SPM" "Spiramycin/metronidazole" "Other antibacterials" "J01RA04,QJ01RA04" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"SOL" 25242512 "Solithromycin" "Macrolides" "J01FA16,QJ01FA16" "NA" "solithera" "73587-8,73609-0,73632-2"
"SPX" 60464 "Sparfloxacin" "Fluoroquinolones,Quinolones" "J01MA09,QJ01MA09" "Quinolone antibacterials" "Fluoroquinolones" "spa,spar,sparfl" "esparfloxacino,parox,spara,sparfloxacine,sparfloxacinum,zagam" 0.2 "g" "20397-6,23610-9,23628-1,35839-0,7047-4"
"SPT" 15541 "Spectinomycin" "Other" "J01XX04,QJ01XX04" "Other antibacterials" "Other antibacterials" "sc,spe,spec,spect,spt" "actinospectacina,adspec,espectinomicina,prospec,spectam,spectinomicina,spectinomycine,spectinomycinhydrate,spectinomycinum,spectogard,stanilo,togamycin,trobicin" 3 "g" "18980-3,35840-8,451-5,452-3,453-1,454-9"
"SPI" 6419898 "Spiramycin" "Macrolides" "J01FA02,QJ01FA02,QJ51FA02" "Macrolides, lincosamides and streptogramins" "Macrolides" "sipram,spir,spiram" "formacidine" 3 "g" "18981-1,455-6,456-4,457-2,458-0,55715-7"
"SPM" "Spiramycin/metronidazole" "Other" "J01RA04,QJ01RA04" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"STR" "Streptoduocin" "Aminoglycosides" "J01GA02,QJ01GA02" "Aminoglycoside antibacterials" "Streptomycins" "NA" "NA" 1 "g" "NA"
"STR1" 19649 "Streptomycin" "Aminoglycosides" "A07AA04,J01GA01,QA07AA04,QJ01GA01" "Aminoglycoside antibacterials" "Streptomycins" "s,st1000,st2000,stm,str,stre,strept" "agrept,agrimycin,chemform,estreptomicina,gerox,neodiestreptopab,strepcen,streptomicina,streptomycine,streptomycinum,streptomyzin" 1 "g" "18982-9,18983-7,20462-8,23626-5,25185-0,25205-6,25206-4,35841-6,4039-4,42658-5,42659-3,459-8,460-6,461-4,462-2,46719-1,48177-0,6933-6,7048-2,7049-0,96114-4"
"STH" "Streptomycin-high" "Aminoglycosides" "NA" "sthi,sthl,strepto high,streptomycin high" "NA" "18983-7,35841-6,6933-6,7049-0"
"STI" "Streptomycin/isoniazid" "Antimycobacterials" "J04AM01,QJ04AM01" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"SUL" 130313 "Sulbactam" "Beta-lactams/penicillins" "J01CG01,QJ01CG01" "Beta-lactam antibacterials, penicillins" "Beta-lactamase inhibitors" "sulbac" "betamaze,sulbactamum" 1 "g" "41716-2,41717-0,41718-8,41739-4"
"SBC" 20055036 "Sulbenicillin" "Beta-lactams/penicillins" "J01CA16,QJ01CA16" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "sulben" "kedacillin,kedacillina,sulbenicilina,sulbenicilline,sulbenicillinum,sulpelin" 15 "g" "NA"
"SUC" 5318 "Sulconazole" "Antifungals/antimycotics" "D01AC09,QD01AC09" "NA" "sulconazol,sulconazolum" "NA"
"SUP" 6634 "Sulfachlorpyridazine" "Other antibacterials" "QJ01EQ12" "sulchl" "cluricol,cosulid,cosumix,durasulf,nefrosul,nsulfanilamide,prinzone,solfaclorpiridazina,sonilyn,sulfacloropiridazina,sulfaclorpiridazina,vetisulid" "NA"
"SDI" 5215 "Sulfadiazine" "Trimethoprims" "J01EC02,QJ01EQ10" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "suldia" "codiazine,cremodiazine,cremotres,debenal,deltazina,dermazin,dermazine,diazolone,diazovit,eskadiazine,flamazine,geben,liquadiazine,microsulfon,neazine,neotrizine,palatrize,piridisir,pirimal,pyrimal,quadetts,quadramoid,sanodiazine,silbertone,sildaflo,silvadene,silvazine,silver,silveramide,sliverex,solfadiazina,spofadrizine,sterazine,sulfacombin,sulfadiazene,sulfadiazin,sulfadiazina,sulfadiazinum,sulfapirimidin,sulfapyrimidin,sulfapyrimidine,sulfatryl,sulfazine,sulfolex,sulfonsol,sulfose,sulphadiazine,terfonyl,theradiazine,thermazene,trifonamide,trisem,truozine" 0.6 "g" "18984-5,27216-1,463-0,464-8,465-5,466-3,59742-7,6907-0,7050-8"
"SLT" 122284 "Sulfadiazine/tetroxoprim" "Trimethoprims" "J01EE06" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "berlocombin,cotetroxazine,potesept,trimerazine" "NA"
"SLT1" 64932 "Sulfadiazine/trimethoprim" "Trimethoprims" "J01EE02,QJ01EW10,QJ51RE01" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "antastmon,astra,ditrim,ditrivet,sultrisan,triglobe,trimin,tucoprim,uniprim" "NA"
"SUD" 5323 "Sulfadimethoxine" "Trimethoprims" "J01ED01,QJ01EQ09,QP51BA01" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "sdimet" "abcid,agribon,albon,arnosulfan,bactotril,bactrovet,deposul,diasulfa,diasulfyl,dimetazina,dinosol,dorisul,fuxal,lasibon,madribon,madrigid,madriqid,madroxin,madroxine,maxulvet,mecozine,memcozine,metoxidon,neostrepal,neostreptal,nsulfanilamidesalt,omnibon,persulfen,radonin,redifal,rofenaid,roscosulf,scandisil,solfadimetossina,sudine,suldixine,sulfabon,sulfadimethoxin,sulfadimethoxinesalt,sulfadimethoxinum,sulfadimetossina,sulfadimetoxin,sulfadimetoxina,sulfadimetoxine,sulfadimoxine,sulfastop,sulfoplan,sulforal,sulphadimethoxine,sulxin,sumbio,symbio,theracanzan,ultrasulfon" 0.5 "g" "87799-3,87803-3"
"SDM" 5327 "Sulfadimidine" "Trimethoprims" "J01EB03,QJ01EQ03,QP51AG01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "suldim" "azolmetazin,bovibol,calfspan,cremomethazine,diazil,diazilsulfadine,diazyl,dimezathine,intradine,kelametazine,mermeth,neasina,neazina,panazin,pirmazin,primazin,solfadimidina,spanbolet,sulfadimerazine,sulfadimesin,sulfadimesine,sulfadimethyldiazine,sulfadimezin,sulfadimezine,sulfadimezinum,sulfadimidin,sulfadimidina,sulfadimidinum,sulfadimidinun,sulfadine,sulfametazina,sulfametazyny,sulfamethiazine,sulfamezathine,sulfamidine,sulfodimesin,sulfodimezine,sulmet,sulphadimidine,sulphamethasine,sulphamethazine,sulphamezathine,sulphamidine,sulphodimezine,superseptil,superseptyl,vertolan,vesadin" 4 "g" "NA"
"SLT2" "Sulfadimidine/trimethoprim" "Trimethoprims" "J01EE05,QJ01EW03" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SLF" 5344 "Sulfafurazole" "Trimethoprims" "J01EB05,QJ01EQ05,QS01AB02,S01AB02" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sfsz" "accuzole,alphazole,amidoxal,astrazolo,azosulfizin,bactesulf,barazae,chemouag,cosoxazole,dorsulfan,entusil,entusul,ganda,gantrisin,gantrisine,gantrisona,gantrizin,gantrosan,isoxamin,neazolin,neoxazol,novazolo,novosaxazole,nsulphanilamide,pancid,pediazole,renosulfan,resoxol,roxosul,roxoxol,saxosozine,sodizole,solfafurazolo,sosol,soxamide,soxisol,soxitabs,soxomide,stansin,sulbio,sulfafurazol,sulfafurazolum,sulfagan,sulfagen,sulfaisoxazole,sulfalar,sulfapolar,sulfasol,sulfasoxazole,sulfasoxizole,sulfazin,sulfisin,sulfisonazole,sulfisoxasole,sulfisoxazol,sulfisoxazolum,sulfizin,sulfizol,sulfizole,sulfofurazole,sulfoxol,suloxsol,sulphafuraz,sulphafurazol,sulphafurazole,sulphafurazolum,sulphaisoxazole,sulphisoxazol,sulphisoxazole,sulphofurazole,sulsoxin,thiasin,unisulf,urisoxin,uritrisin,urogan" 4 "g" 4 "g" "NA"
"SLF1" 5343 "Sulfaisodimidine" "Trimethoprims" "J01EB01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "aristamid,aristamide,aristogyn,domain,domian,elcosin,elcosine,elkosil,elkosin,elkosine,erycon,isosulf,mefenal,solfisomidina,sulfadimetine,sulfaisodimerazine,sulfaisodimidinum,sulfaisomidine,sulfasomidine,sulfisomidin,sulfisomidina,sulfisomidine,sulfisomidinum,sulphasomidine" 4 "g" 4 "g" "NA"
"SLF2" 9047 "Sulfalene" "Trimethoprims" "J01ED02,QJ01EQ19" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "dalysep,farmitalia,kelfizin,kelfizina,kelfizine,policydal,solfametopirazina,sulfalen,sulfaleno,sulfalenum,sulfamethopyrazine,sulfamethoxypyrazine,sulfametopyrazine,sulfametoxypyridazin,sulphalene,sulphametopyrazine,vetkelfizina" 0.1 "g" "NA"
"SZO" 187764 "Sulfamazone" "Trimethoprims" "J01ED09" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "sulfamazona,sulfamazonum,sulfenazone" 1.5 "g" "NA"
"SLF3" 5325 "Sulfamerazine" "Trimethoprims" "D06BA06,J01ED07,QD06BA06,QJ01EQ17" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "sulmet" "cremomerazine,kelamerazine,mebacid,mesulfa,methylpyrimal,methylsulfazin,methylsulfazine,metilsulfadiazin,metilsulfazin,percoccide,pyralcid,romezin,septacil,septosyl,solfamerazina,solumedin,solumedine,sulfameradine,sulfamerazin,sulfamerazina,sulfamerazinum,sulfamethyldiazine,sulphamerazine,sumedine" 3 "g" "NA"
"SLT3" "Sulfamerazine/trimethoprim" "Trimethoprims" "J01EE07,QJ01EW18" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SUM" 5327 "Sulfamethazine" "Other antibacterials" "NA" "NA" "NA" "87592-2"
"SLF4" 5328 "Sulfamethizole" "Trimethoprims" "B05CA04,D06BA04,J01EB02,QB05CA04,QD06BA04,QJ01EQ02,QS01AB01,S01AB01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sfmz" "aethazolum,ayerlucil,berlophen,gliprotiazol,globucid,globucin,globuzid,glyprothiazol,glyprothiazole,glyprothiazolum,glyprothizolum,lucosil,microsul,proklar,renasul,rufol,salimol,sethadil,solfametizolo,solfetidolo,sulfaethidiole,sulfaethidol,sulfaethidole,sulfaethidolum,sulfaetidol,sulfamethizol,sulfamethizolum,sulfametizol,sulfapyelon,sulfstat,sulfurine,sulphaethidole,sulphamethizole,tardipyrine,tetracid,thidicur,thiosulfil,ultrasul,urocydal,urodiaton,urolucosil,urosulfin" 4 "g" "60175-7,60176-5,60177-3"
"SMX" 5329 "Sulfamethoxazole" "Trimethoprims" "J01EC01,QJ01EQ11" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "sfmx,sulf,sulfam" "septran,septrin,simsinomin,sinomin,solfametossazolo,sulfamethalazole,sulfamethoxazolum,sulfamethoxizole,sulfamethylisoxazole,sulfametoxazol,sulfiodizole,sulfisomezole,sulphisomezole,urobak" 2 "g" "10342-4,11577-4,18985-2,25271-8,39772-9,467-1,468-9,469-7,470-5,59971-2,59972-0,60333-2,72674-5,80549-9,80974-9"
"SLF5" 5330 "Sulfamethoxypyridazine" "Trimethoprims" "J01ED05,QJ01EQ15" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "altezol,cysul,davosin,depovernil,durox,kineks,kinex,kynex,lederkyn,lentac,lisulfen,longin,medicel,midicel,midikel,myasul,opinsul,paramid,petrisul,piridolo,quinoseptyl,retamid,retasulfin,retasulphine,slosul,spofadazine,succinylsulfathi,sulfalex,sulfapiridazin,sulfapyridazine,sulfdurazin,sulfozona,sultirene,vinces" 0.5 "g" "NA"
"SLF6" 19596 "Sulfametomidine" "Trimethoprims" "J01ED03" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "duroprocin,methofadin,methofazine,solfametomidina,sulfametomidin,sulfametomidina,sulfametomidinum,telemid" "NA"
"SLF7" 5326 "Sulfametoxydiazine" "Trimethoprims" "J01ED04" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "bayrena,berlicid,dairena,durenat,juvoxin,kinecid,kirocid,kiron,longasulf,methoxypyrimal,solfametossidiazina,sulfameter,sulfametersalt,sulfamethorine,sulfamethoxine,sulfamethoxydiazin,sulfamethoxydiazine,sulfamethoxydin,sulfamethoxydine,sulfametin,sulfametinum,sulfametorine,sulfametorinum,sulfametoxidiazina,sulfametoxidine,sulfametoxydiazinum,sulla,sulphameter,sulphamethoxydiazine,supramid,ultrax" 0.5 "g" "NA"
"SLT4" "Sulfametrole/trimethoprim" "Trimethoprims" "J01EE03" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "trsm" "NA" "NA"
"SLF8" 12894 "Sulfamoxole" "Trimethoprims" "J01EC03" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "NA" "enterocura,justamil,oxasulfa,solfaguanolo,solfamossolo,sulfadimethyloxazole,sulfaguanol,sulfaguanole,sulfaguanolum,sulfamoxol,sulfamoxolum,sulfano,sulfavigor,sulfmidil,sulfono,sulfune,sulfuno,sulphamoxole,tardamid,tardamide" 1 "g" 1 "g" "NA"
"SLT5" "Sulfamoxole/trimethoprim" "Trimethoprims" "J01EE04" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SLF9" 5333 "Sulfanilamide" "Trimethoprims" "D06BA05,J01EB06,QD06BA05,QJ01EQ06" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "albexan,albosal,ambeside,antistrept,astreptine,astrocid,bacteramid,bactesid,collomide,colsulanyde,copticide,deseptyl,dipron,ergaseptine,erysipan,estreptocida,exoseptoplix,fourneau,gerison,gombardol,hydroxysulfonamide,infepan,lusil,lysococcine,neococcyl,orgaseptine,prontalbin,prontylin,proseptal,proseptine,proseptol,pysococcine,sanamid,septanilam,septinal,septolix,septoplex,septoplix,solfanilamide,stramid,strepamide,strepsan,streptagol,streptamid,streptamin,streptasol,streptocid,streptocide,streptocidum,streptoclase,streptocom,strepton,streptopan,streptosil,streptozol,streptozone,streptrocide,sulfamidyl,sulfamine,sulfana,sulfanalone,sulfanidyl,sulfanil,sulfanilamida,sulfanilamidomethan,sulfanilamidum,sulfanimide,sulfocidin,sulfocidine,sulfonylamide,sulphanilamide,sulphanilamidum,sulphonamide,therapol,tolder" "NA"
"SLF10" 68933 "Sulfaperin" "Trimethoprims" "J01ED06" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "anastaf,archisulfa,archisulpha,avissul,chemiopen,demosulfan,demosulphan,durisan,isosulfamerazine,isosulphamerazine,methylsulfadiazin,methylsulfadiazine,methylsulphadiazine,novosul,orosulfan,pallidin,retardon,risulfasens,sulfaperina,sulfaperine,sulfaperinum,sulfatreis,sulfopirimidine,sulpenta,sulphaperin,sulphaperina,sulphaperinum" 0.5 "g" "NA"
"SLF11" 5335 "Sulfaphenazole" "Trimethoprims" "J01ED08,QJ01EQ08" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "depocid,depotsulfonamide,eftolon,firmazolo,inamil,isarol,merian,orisul,orisulf,paidazolo,phenylsulfapyrazole,plisulfan,raziosulfa,solfafenazolo,sulfabid,sulfafenazol,sulfafenazolo,sulfaphenazol,sulfaphenazolum,sulfaphenazon,sulfaphenylpipazol,sulfaphenylpyrazol,sulfaphenylpyrazole,sulfonylpyrazol,sulphaphenazole,sulphenazole" 1 "g" "NA"
"SLF12" 5336 "Sulfapyridine" "Trimethoprims" "J01EB04,QJ01EQ04" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "adiplon,coccoclase,dagenan,eubasin,eubasinum,haptocil,piridazol,plurazol,pyriamid,pyridazol,relbapiridina,ronin,septipulmon,solfapiridina,soludagenan,streptosilpyridine,sulfapiridina,sulfapyridin,sulfapyridinum,sulfidin,sulfidine,sulphapyridin,sulphapyridine,thioseptal,trianon" 1 "g" "14075-6,55580-5"
"SNA" 60582 "Sulfasuccinamide" "Other antibacterials" "NA" "NA" "sulfasuccinamid,sulfasuccinamida,sulfasuccinamidum" "NA"
"SUT" 5340 "Sulfathiazole" "Trimethoprims" "D06BA02,J01EB07,QD06BA02,QJ01EQ07" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sulthi" "azoquimiol,azoseptale,cerazol,cerazole,chemosept,cibazol,duatok,dulana,eleudron,enterobiocine,estafilol,formosulfathiazole,neostrepsan,norsulfasol,norsulfazol,norsulfazole,norsulfazolum,planomide,poliseptil,sanotiazol,septozol,solfatiazolo,soluthiazomide,streptosilthiazole,sulfamul,sulfaplex,sulfathiazol,sulfathiazolesalt,sulfathiazolum,sulfatiazol,sulfavitina,sulfocerol,sulphathiazole,sulzol,thiacoccine,thiasulfol,thiazamide,thiozamide,wintrazole" "87591-4,87796-9,87797-7"
"SLF13" 3000579 "Sulfathiourea" "Trimethoprims" "J01EB08" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "badional,baldinol,fontamide,salvoseptyl,solfatiourea,solufontamide,sulfanilthiourea,sulfathiocarbamid,sulfathiocarbamide,sulfathiocarbamidum,sulfathioureasalt,sulfathiouree,sulfatiourea,sulphathiourea" 6 "g" "NA"
"SOX" 5344 "Sulfisoxazole" "Other antibacterials" "NA" "sulfiz" "NA" "11578-2,18986-0,25226-2,471-3,472-1,473-9,474-7,9701-4"
"SSS" 86225 "Sulfonamide" "Other antibacterials" "NA" "sfna,sulami" "NA" "17674-3,17675-0,18987-8,35842-4,4040-2,4041-0,4042-8,475-4,476-2,477-0,478-8,75650-2"
"SLP" 9950244 "Sulopenem" "Other antibacterials" "NA" "sulope" "orlynvah" "55289-3,55290-1,55291-9"
"SLT6" 444022 "Sultamicillin" "Beta-lactams/penicillins" "J01CR04,QJ01CR04" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "sultos" "combisid,sultamicilina,sultamicilline,sultamicillinum,unacid" 1.5 "g" "NA"
"SUR" 46700778 "Surotomycin" "Other antibacterials" "NA" "NA" "surotomicina,surotomycine" "NA"
"TAL" 71447 "Talampicillin" "Beta-lactams/penicillins" "J01CA15,QJ01CA15" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "aseocillin,phthalidyl,talampicilina,talampicilline,talampicillinum,talpen,yamacillin" 2 "g" "18988-6,479-6,480-4,481-2,482-0"
"TLP" 163307 "Talmetoprim" "Other antibacterials" "NA" "NA" "NA" "NA"
"TAN" 76902493 "Taniborbactam" "Carbapenems" "NA" "vnrx-5133" "NA" "NA"
"TAZ" 123630 "Tazobactam" "Beta-lactams/penicillins" "J01CG02,QJ01CG02" "Beta-lactam antibacterials, penicillins" "Beta-lactamase inhibitors" "tazo,tazoba" "exblifep,tazobactamsalt,tazobactamum,tazobactum" "41719-6,41720-4,41721-2,41740-2"
"TBP" 9800194 "Tebipenem" "Carbapenems" "NA" "NA" "NA" "NA"
"SUL" 130313 "Sulbactam" "Beta-lactamase inhibitors" "J01CG01,QJ01CG01" "Beta-lactam antibacterials, penicillins" "Beta-lactamase inhibitors" "sulbac" "betamaze,sulbactamum" 1 "g" "41716-2,41717-0,41718-8,41739-4"
"SBC" 20055036 "Sulbenicillin" "Penicillins,Beta-lactams" "J01CA16,QJ01CA16" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "sulben" "kedacillin,kedacillina,sulbenicilina,sulbenicilline,sulbenicillinum,sulpelin" 15 "g" "NA"
"SUC" 5318 "Sulconazole" "Antifungals" "D01AC09,QD01AC09" "NA" "sulconazol,sulconazolum" "NA"
"SUP" 6634 "Sulfachlorpyridazine" "Sulfonamides" "QJ01EQ12" "sulchl" "cluricol,cosulid,cosumix,durasulf,nefrosul,nsulfanilamide,prinzone,solfaclorpiridazina,sonilyn,sulfacloropiridazina,sulfaclorpiridazina,vetisulid" "NA"
"SDI" 5215 "Sulfadiazine" "Trimethoprims,Sulfonamides" "J01EC02,QJ01EQ10" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "suldia" "codiazine,cremodiazine,cremotres,debenal,deltazina,dermazin,dermazine,diazolone,diazovit,eskadiazine,flamazine,geben,liquadiazine,microsulfon,neazine,neotrizine,palatrize,piridisir,pirimal,pyrimal,quadetts,quadramoid,sanodiazine,silbertone,sildaflo,silvadene,silvazine,silver,silveramide,sliverex,solfadiazina,spofadrizine,sterazine,sulfacombin,sulfadiazene,sulfadiazin,sulfadiazina,sulfadiazinum,sulfapirimidin,sulfapyrimidin,sulfapyrimidine,sulfatryl,sulfazine,sulfolex,sulfonsol,sulfose,sulphadiazine,terfonyl,theradiazine,thermazene,trifonamide,trisem,truozine" 0.6 "g" "18984-5,27216-1,463-0,464-8,465-5,466-3,59742-7,6907-0,7050-8"
"SLT" 122284 "Sulfadiazine/tetroxoprim" "Trimethoprims,Sulfonamides" "J01EE06" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "berlocombin,cotetroxazine,potesept,trimerazine" "NA"
"SLT1" 64932 "Sulfadiazine/trimethoprim" "Trimethoprims,Sulfonamides" "J01EE02,QJ01EW10,QJ51RE01" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "antastmon,astra,ditrim,ditrivet,sultrisan,triglobe,trimin,tucoprim,uniprim" "NA"
"SUD" 5323 "Sulfadimethoxine" "Trimethoprims,Sulfonamides" "J01ED01,QJ01EQ09,QP51BA01" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "sdimet" "abcid,agribon,albon,arnosulfan,bactotril,bactrovet,deposul,diasulfa,diasulfyl,dimetazina,dinosol,dorisul,fuxal,lasibon,madribon,madrigid,madriqid,madroxin,madroxine,maxulvet,mecozine,memcozine,metoxidon,neostrepal,neostreptal,nsulfanilamidesalt,omnibon,persulfen,radonin,redifal,rofenaid,roscosulf,scandisil,solfadimetossina,sudine,suldixine,sulfabon,sulfadimethoxin,sulfadimethoxinesalt,sulfadimethoxinum,sulfadimetossina,sulfadimetoxin,sulfadimetoxina,sulfadimetoxine,sulfadimoxine,sulfastop,sulfoplan,sulforal,sulphadimethoxine,sulxin,sumbio,symbio,theracanzan,ultrasulfon" 0.5 "g" "87799-3,87803-3"
"SDM" 5327 "Sulfadimidine" "Trimethoprims,Sulfonamides" "J01EB03,QJ01EQ03,QP51AG01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "suldim" "azolmetazin,bovibol,calfspan,cremomethazine,diazil,diazilsulfadine,diazyl,dimezathine,intradine,kelametazine,mermeth,neasina,neazina,panazin,pirmazin,primazin,solfadimidina,spanbolet,sulfadimerazine,sulfadimesin,sulfadimesine,sulfadimethyldiazine,sulfadimezin,sulfadimezine,sulfadimezinum,sulfadimidin,sulfadimidina,sulfadimidinum,sulfadimidinun,sulfadine,sulfametazina,sulfametazyny,sulfamethiazine,sulfamezathine,sulfamidine,sulfodimesin,sulfodimezine,sulmet,sulphadimidine,sulphamethasine,sulphamethazine,sulphamezathine,sulphamidine,sulphodimezine,superseptil,superseptyl,vertolan,vesadin" 4 "g" "NA"
"SLT2" "Sulfadimidine/trimethoprim" "Trimethoprims,Sulfonamides" "J01EE05,QJ01EW03" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SLF" 5344 "Sulfafurazole" "Trimethoprims,Sulfonamides" "J01EB05,QJ01EQ05,QS01AB02,S01AB02" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sfsz" "accuzole,alphazole,amidoxal,astrazolo,azosulfizin,bactesulf,barazae,chemouag,cosoxazole,dorsulfan,entusil,entusul,ganda,gantrisin,gantrisine,gantrisona,gantrizin,gantrosan,isoxamin,neazolin,neoxazol,novazolo,novosaxazole,nsulphanilamide,pancid,pediazole,renosulfan,resoxol,roxosul,roxoxol,saxosozine,sodizole,solfafurazolo,sosol,soxamide,soxisol,soxitabs,soxomide,stansin,sulbio,sulfafurazol,sulfafurazolum,sulfagan,sulfagen,sulfaisoxazole,sulfalar,sulfapolar,sulfasol,sulfasoxazole,sulfasoxizole,sulfazin,sulfisin,sulfisonazole,sulfisoxasole,sulfisoxazol,sulfisoxazolum,sulfizin,sulfizol,sulfizole,sulfofurazole,sulfoxol,suloxsol,sulphafuraz,sulphafurazol,sulphafurazole,sulphafurazolum,sulphaisoxazole,sulphisoxazol,sulphisoxazole,sulphofurazole,sulsoxin,thiasin,unisulf,urisoxin,uritrisin,urogan" 4 "g" 4 "g" "NA"
"SLF1" 5343 "Sulfaisodimidine" "Trimethoprims,Sulfonamides" "J01EB01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "aristamid,aristamide,aristogyn,domain,domian,elcosin,elcosine,elkosil,elkosin,elkosine,erycon,isosulf,mefenal,solfisomidina,sulfadimetine,sulfaisodimerazine,sulfaisodimidinum,sulfaisomidine,sulfasomidine,sulfisomidin,sulfisomidina,sulfisomidine,sulfisomidinum,sulphasomidine" 4 "g" 4 "g" "NA"
"SLF2" 9047 "Sulfalene" "Trimethoprims,Sulfonamides" "J01ED02,QJ01EQ19" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "dalysep,farmitalia,kelfizin,kelfizina,kelfizine,policydal,solfametopirazina,sulfalen,sulfaleno,sulfalenum,sulfamethopyrazine,sulfamethoxypyrazine,sulfametopyrazine,sulfametoxypyridazin,sulphalene,sulphametopyrazine,vetkelfizina" 0.1 "g" "NA"
"SZO" 187764 "Sulfamazone" "Trimethoprims,Sulfonamides" "J01ED09" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "sulfamazona,sulfamazonum,sulfenazone" 1.5 "g" "NA"
"SLF3" 5325 "Sulfamerazine" "Trimethoprims,Sulfonamides" "D06BA06,J01ED07,QD06BA06,QJ01EQ17" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "sulmet" "cremomerazine,kelamerazine,mebacid,mesulfa,methylpyrimal,methylsulfazin,methylsulfazine,metilsulfadiazin,metilsulfazin,percoccide,pyralcid,romezin,septacil,septosyl,solfamerazina,solumedin,solumedine,sulfameradine,sulfamerazin,sulfamerazina,sulfamerazinum,sulfamethyldiazine,sulphamerazine,sumedine" 3 "g" "NA"
"SLT3" "Sulfamerazine/trimethoprim" "Trimethoprims,Sulfonamides" "J01EE07,QJ01EW18" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SUM" 5327 "Sulfamethazine" "Sulfonamides" "NA" "NA" "NA" "87592-2"
"SLF4" 5328 "Sulfamethizole" "Trimethoprims,Sulfonamides" "B05CA04,D06BA04,J01EB02,QB05CA04,QD06BA04,QJ01EQ02,QS01AB01,S01AB01" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sfmz" "aethazolum,ayerlucil,berlophen,gliprotiazol,globucid,globucin,globuzid,glyprothiazol,glyprothiazole,glyprothiazolum,glyprothizolum,lucosil,microsul,proklar,renasul,rufol,salimol,sethadil,solfametizolo,solfetidolo,sulfaethidiole,sulfaethidol,sulfaethidole,sulfaethidolum,sulfaetidol,sulfamethizol,sulfamethizolum,sulfametizol,sulfapyelon,sulfstat,sulfurine,sulphaethidole,sulphamethizole,tardipyrine,tetracid,thidicur,thiosulfil,ultrasul,urocydal,urodiaton,urolucosil,urosulfin" 4 "g" "60175-7,60176-5,60177-3"
"SMX" 5329 "Sulfamethoxazole" "Trimethoprims,Sulfonamides" "J01EC01,QJ01EQ11" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "sfmx,sulf,sulfam" "septran,septrin,simsinomin,sinomin,solfametossazolo,sulfamethalazole,sulfamethoxazolum,sulfamethoxizole,sulfamethylisoxazole,sulfametoxazol,sulfiodizole,sulfisomezole,sulphisomezole,urobak" 2 "g" "10342-4,11577-4,18985-2,25271-8,39772-9,467-1,468-9,469-7,470-5,59971-2,59972-0,60333-2,72674-5,80549-9,80974-9"
"SLF5" 5330 "Sulfamethoxypyridazine" "Trimethoprims,Sulfonamides" "J01ED05,QJ01EQ15" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "altezol,cysul,davosin,depovernil,durox,kineks,kinex,kynex,lederkyn,lentac,lisulfen,longin,medicel,midicel,midikel,myasul,opinsul,paramid,petrisul,piridolo,quinoseptyl,retamid,retasulfin,retasulphine,slosul,spofadazine,succinylsulfathi,sulfalex,sulfapiridazin,sulfapyridazine,sulfdurazin,sulfozona,sultirene,vinces" 0.5 "g" "NA"
"SLF6" 19596 "Sulfametomidine" "Trimethoprims,Sulfonamides" "J01ED03" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "duroprocin,methofadin,methofazine,solfametomidina,sulfametomidin,sulfametomidina,sulfametomidinum,telemid" "NA"
"SLF7" 5326 "Sulfametoxydiazine" "Trimethoprims,Sulfonamides" "J01ED04" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "bayrena,berlicid,dairena,durenat,juvoxin,kinecid,kirocid,kiron,longasulf,methoxypyrimal,solfametossidiazina,sulfameter,sulfametersalt,sulfamethorine,sulfamethoxine,sulfamethoxydiazin,sulfamethoxydiazine,sulfamethoxydin,sulfamethoxydine,sulfametin,sulfametinum,sulfametorine,sulfametorinum,sulfametoxidiazina,sulfametoxidine,sulfametoxydiazinum,sulla,sulphameter,sulphamethoxydiazine,supramid,ultrax" 0.5 "g" "NA"
"SLT4" "Sulfametrole/trimethoprim" "Trimethoprims,Sulfonamides" "J01EE03" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "trsm" "NA" "NA"
"SLF8" 12894 "Sulfamoxole" "Trimethoprims,Sulfonamides" "J01EC03" "Sulfonamides and trimethoprim" "Intermediate-acting sulfonamides" "NA" "enterocura,justamil,oxasulfa,solfaguanolo,solfamossolo,sulfadimethyloxazole,sulfaguanol,sulfaguanole,sulfaguanolum,sulfamoxol,sulfamoxolum,sulfano,sulfavigor,sulfmidil,sulfono,sulfune,sulfuno,sulphamoxole,tardamid,tardamide" 1 "g" 1 "g" "NA"
"SLT5" "Sulfamoxole/trimethoprim" "Trimethoprims,Sulfonamides" "J01EE04" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "NA" "NA" "NA"
"SLF9" 5333 "Sulfanilamide" "Trimethoprims,Sulfonamides" "D06BA05,J01EB06,QD06BA05,QJ01EQ06" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "albexan,albosal,ambeside,antistrept,astreptine,astrocid,bacteramid,bactesid,collomide,colsulanyde,copticide,deseptyl,dipron,ergaseptine,erysipan,estreptocida,exoseptoplix,fourneau,gerison,gombardol,hydroxysulfonamide,infepan,lusil,lysococcine,neococcyl,orgaseptine,prontalbin,prontylin,proseptal,proseptine,proseptol,pysococcine,sanamid,septanilam,septinal,septolix,septoplex,septoplix,solfanilamide,stramid,strepamide,strepsan,streptagol,streptamid,streptamin,streptasol,streptocid,streptocide,streptocidum,streptoclase,streptocom,strepton,streptopan,streptosil,streptozol,streptozone,streptrocide,sulfamidyl,sulfamine,sulfana,sulfanalone,sulfanidyl,sulfanil,sulfanilamida,sulfanilamidomethan,sulfanilamidum,sulfanimide,sulfocidin,sulfocidine,sulfonylamide,sulphanilamide,sulphanilamidum,sulphonamide,therapol,tolder" "NA"
"SLF10" 68933 "Sulfaperin" "Trimethoprims,Sulfonamides" "J01ED06" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "anastaf,archisulfa,archisulpha,avissul,chemiopen,demosulfan,demosulphan,durisan,isosulfamerazine,isosulphamerazine,methylsulfadiazin,methylsulfadiazine,methylsulphadiazine,novosul,orosulfan,pallidin,retardon,risulfasens,sulfaperina,sulfaperine,sulfaperinum,sulfatreis,sulfopirimidine,sulpenta,sulphaperin,sulphaperina,sulphaperinum" 0.5 "g" "NA"
"SLF11" 5335 "Sulfaphenazole" "Trimethoprims,Sulfonamides" "J01ED08,QJ01EQ08" "Sulfonamides and trimethoprim" "Long-acting sulfonamides" "NA" "depocid,depotsulfonamide,eftolon,firmazolo,inamil,isarol,merian,orisul,orisulf,paidazolo,phenylsulfapyrazole,plisulfan,raziosulfa,solfafenazolo,sulfabid,sulfafenazol,sulfafenazolo,sulfaphenazol,sulfaphenazolum,sulfaphenazon,sulfaphenylpipazol,sulfaphenylpyrazol,sulfaphenylpyrazole,sulfonylpyrazol,sulphaphenazole,sulphenazole" 1 "g" "NA"
"SLF12" 5336 "Sulfapyridine" "Trimethoprims,Sulfonamides" "J01EB04,QJ01EQ04" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "adiplon,coccoclase,dagenan,eubasin,eubasinum,haptocil,piridazol,plurazol,pyriamid,pyridazol,relbapiridina,ronin,septipulmon,solfapiridina,soludagenan,streptosilpyridine,sulfapiridina,sulfapyridin,sulfapyridinum,sulfidin,sulfidine,sulphapyridin,sulphapyridine,thioseptal,trianon" 1 "g" "14075-6,55580-5"
"SNA" 60582 "Sulfasuccinamide" "Sulfonamides" "NA" "NA" "sulfasuccinamid,sulfasuccinamida,sulfasuccinamidum" "NA"
"SUT" 5340 "Sulfathiazole" "Trimethoprims,Sulfonamides" "D06BA02,J01EB07,QD06BA02,QJ01EQ07" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "sulthi" "azoquimiol,azoseptale,cerazol,cerazole,chemosept,cibazol,duatok,dulana,eleudron,enterobiocine,estafilol,formosulfathiazole,neostrepsan,norsulfasol,norsulfazol,norsulfazole,norsulfazolum,planomide,poliseptil,sanotiazol,septozol,solfatiazolo,soluthiazomide,streptosilthiazole,sulfamul,sulfaplex,sulfathiazol,sulfathiazolesalt,sulfathiazolum,sulfatiazol,sulfavitina,sulfocerol,sulphathiazole,sulzol,thiacoccine,thiasulfol,thiazamide,thiozamide,wintrazole" "87591-4,87796-9,87797-7"
"SLF13" 3000579 "Sulfathiourea" "Trimethoprims,Sulfonamides" "J01EB08" "Sulfonamides and trimethoprim" "Short-acting sulfonamides" "NA" "badional,baldinol,fontamide,salvoseptyl,solfatiourea,solufontamide,sulfanilthiourea,sulfathiocarbamid,sulfathiocarbamide,sulfathiocarbamidum,sulfathioureasalt,sulfathiouree,sulfatiourea,sulphathiourea" 6 "g" "NA"
"SOX" 5344 "Sulfisoxazole" "Sulfonamides" "NA" "sulfiz" "NA" "11578-2,18986-0,25226-2,471-3,472-1,473-9,474-7,9701-4"
"SSS" 86225 "Sulfonamide" "Sulfonamides" "NA" "sfna,sulami" "NA" "17674-3,17675-0,18987-8,35842-4,4040-2,4041-0,4042-8,475-4,476-2,477-0,478-8,75650-2"
"SLP" 9950244 "Sulopenem" "Other" "NA" "sulope" "orlynvah" "55289-3,55290-1,55291-9"
"SLT6" 444022 "Sultamicillin" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR04,QJ01CR04" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "sultos" "combisid,sultamicilina,sultamicilline,sultamicillinum,unacid" 1.5 "g" "NA"
"SUR" 46700778 "Surotomycin" "Other" "NA" "NA" "surotomicina,surotomycine" "NA"
"TAL" 71447 "Talampicillin" "Penicillins,Beta-lactams" "J01CA15,QJ01CA15" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "NA" "aseocillin,phthalidyl,talampicilina,talampicilline,talampicillinum,talpen,yamacillin" 2 "g" "18988-6,479-6,480-4,481-2,482-0"
"TLP" 163307 "Talmetoprim" "Other" "NA" "NA" "NA" "NA"
"TAN" 76902493 "Taniborbactam" "Carbapenems,Beta-lactams,Beta-lactamase inhibitors" "NA" "vnrx-5133" "NA" "NA"
"TAZ" 123630 "Tazobactam" "Beta-lactamase inhibitors" "J01CG02,QJ01CG02" "Beta-lactam antibacterials, penicillins" "Beta-lactamase inhibitors" "tazo,tazoba" "exblifep,tazobactamsalt,tazobactamum,tazobactum" "41719-6,41720-4,41721-2,41740-2"
"TBP" 9800194 "Tebipenem" "Carbapenems,Beta-lactams" "NA" "NA" "NA" "NA"
"TZD" 11234049 "Tedizolid" "Oxazolidinones" "J01XX11,QJ01XX11" "Other antibacterials" "Other antibacterials" "tedi" "torezolid" 0.2 "g" 0.2 "g" "73586-0,73608-2,73631-4"
"TEC" 16131923 "Teicoplanin" "Glycopeptides" "J01XA02,QJ01XA02" "Other antibacterials" "Glycopeptide antibacterials" "tec,tei,teic,teicop,tp,tpl,tpn" "NA" 0.4 "g" "18989-4,25534-9,25535-6,34378-0,34379-8,4043-6,483-8,484-6,485-3,486-1,7051-6,80968-1"
"TCM" "Teicoplanin-macromethod" "Glycopeptides" "NA" "NA" "NA" "NA"
"TLV" 3081362 "Telavancin" "Glycopeptides" "J01XA03,QJ01XA03" "Other antibacterials" "Glycopeptide antibacterials" "tela,telava" "arbelic,nvancomycin,televancin" "72894-9,73630-6,85051-1,88886-7"
"TLT" 3002190 "Telithromycin" "Macrolides/lincosamides" "J01FA15,QJ01FA15" "Macrolides, lincosamides and streptogramins" "Macrolides" "teli,telith" "ketek,levviax" 0.8 "g" "35843-2,35844-0,35845-7,41722-0"
"TMX" 60021 "Temafloxacin" "Fluoroquinolones" "J01MA05,QJ01MA05" "Quinolone antibacterials" "Fluoroquinolones" "tema,temafl" "omniflox,temafloxacina,temafloxacine,temafloxacino,temafloxacinum" 0.8 "g" "18990-2,487-9,488-7,489-5,490-3"
"TEM" 171758 "Temocillin" "Beta-lactams/penicillins" "J01CA17,QJ01CA17" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "temo,temoci" "negaban,temocilina,temocillina,temocilline,temocillinum" 4 "g" "18991-0,491-1,492-9,493-7,494-5,54190-4"
"TRB" 1549008 "Terbinafine" "Antifungals/antimycotics" "D01AE15,D01BA02,QD01AE15,QD01BA02" "Antifungals for systemic use" "Antifungals for systemic use" "terb" "afogan,bramazil,bramizil,corbinal,lamasil,lamisil,muzonal,shoprite,terbina,terbinafina,terbinafinum,terbine,terbinex,terbisil,zabel" 0.25 "g" "10720-1,10721-9,18992-8"
"TRC" 441383 "Terconazole" "Antifungals/antimycotics" "G01AG02,QG01AG02" "NA" "fungistat,panlomyc,terazol,terconazol,terconazolum,tercospor,tetrazol,triaconazole,zazole" "55196-0"
"TLV" 3081362 "Telavancin" "Lipoglycopeptides,Glycopeptides" "J01XA03,QJ01XA03" "Other antibacterials" "Glycopeptide antibacterials" "tela,telava" "arbelic,nvancomycin,televancin" "72894-9,73630-6,85051-1,88886-7"
"TLT" 3002190 "Telithromycin" "Macrolides" "J01FA15,QJ01FA15" "Macrolides, lincosamides and streptogramins" "Macrolides" "teli,telith" "ketek,levviax" 0.8 "g" "35843-2,35844-0,35845-7,41722-0"
"TMX" 60021 "Temafloxacin" "Fluoroquinolones,Quinolones" "J01MA05,QJ01MA05" "Quinolone antibacterials" "Fluoroquinolones" "tema,temafl" "omniflox,temafloxacina,temafloxacine,temafloxacino,temafloxacinum" 0.8 "g" "18990-2,487-9,488-7,489-5,490-3"
"TEM" 171758 "Temocillin" "Penicillins,Beta-lactams" "J01CA17,QJ01CA17" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "temo,temoci" "negaban,temocilina,temocillina,temocilline,temocillinum" 4 "g" "18991-0,491-1,492-9,493-7,494-5,54190-4"
"TRB" 1549008 "Terbinafine" "Antifungals" "D01AE15,D01BA02,QD01AE15,QD01BA02" "Antifungals for systemic use" "Antifungals for systemic use" "terb" "afogan,bramazil,bramizil,corbinal,lamasil,lamisil,muzonal,shoprite,terbina,terbinafina,terbinafinum,terbine,terbinex,terbisil,zabel" 0.25 "g" "10720-1,10721-9,18992-8"
"TRC" 441383 "Terconazole" "Antifungals" "G01AG02,QG01AG02" "NA" "fungistat,panlomyc,terazol,terconazol,terconazolum,tercospor,tetrazol,triaconazole,zazole" "55196-0"
"TRZ" 65720 "Terizidone" "Antimycobacterials" "J04AK03,QJ04AK03" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "NA" "terivalidin,terizidona,terizidonum" "NA"
"TCY" 54675776 "Tetracycline" "Tetracyclines" "A01AB13,D06AA04,J01AA07,QA01AB13,QD06AA04,QG01AA90,QG51AA02,QJ01AA07,QJ51AA07,QS01AA09,QS02AA08,QS03AA02,S01AA09,S02AA08,S03AA02" "Tetracyclines" "Tetracyclines" "tc,te,tet,tetcyc,tetr,tetra" "abramycin,abricycline,agromicina,ambramicina,ambramycin,biocycline,brodspec,cefracycline,centet,ciclibion,copharlan,criseociclina,democracin,deschlorobiomycin,economycin,hostacyclin,lexacycline,limecycline,liquamycin,mericycline,micycline,neocycline,omegamycin,orlycycline,panmycin,purocyclina,roviciclina,solvocin,tetrabon,tetraciclina,tetracyclinehydrate,tetracyclinum,tetracyn,tetradecin,tetrafil,tetraverine,tetrazyklin,tsiklomistsin,tsiklomitsin,veracin,vetacyclinum" 1 "g" 1 "g" "101504-9,18993-6,25272-6,4045-1,495-2,496-0,497-8,498-6,7052-4,87590-6"
"TCY-S" "Tetracycline screening test" "Tetracyclines" "NA" "tcy screen" "NA" "NA"
"TOL" 54691494 "Tetracycline/oleandomycin" "Other antibacterials" "J01RA08,QJ01RA08" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"TET" 65450 "Tetroxoprim" "Other antibacterials" "NA" "NA" "primsol,tetroxoprima,tetroxoprime,tetroxoprimum,trimpex,trimplex" "NA"
"TOL" 54691494 "Tetracycline/oleandomycin" "Tetracyclines" "J01RA08,QJ01RA08" "Combinations of antibacterials" "Combinations of antibacterials" "NA" "NA" "NA"
"TET" 65450 "Tetroxoprim" "Other" "NA" "NA" "primsol,tetroxoprima,tetroxoprime,tetroxoprimum,trimpex,trimplex" "NA"
"THA" 9568512 "Thiacetazone" "Oxazolidinones" "NA" "NA" "acetanilide,aktivan,ambathizon,amitiozon,antib,benthiozone,benzothiozane,benzothiozon,berkazon,citazone,conteben,diasan,domakol,ilbion,livazone,mivizon,myvizone,neotibil,neustab,novakol,panrone,parazone,seroden,siocarbazone,tebalon,tebecure,tebemar,tebethion,tebethione,tebezon,thiacetone,thiacetozone,thibon,thibone,thioacetazon,thioacetazonum,thioazetazone,thiocarbazil,thiomicid,thionicid,thioparamizon,thioparamizone,thiosemicarbarzone,thiosemicarbazone,thiotebesin,thiotebezin,thiotebicina,thizone,tiacetazon,tibicur,tibion,tibione,tibizan,tibon,tibone,tioacetazon,tioacetazona,tioatsetazon,tiobicina,tiocarone,tiosecolo,tubercazon,tubigal,tubin" "32384-0,54184-7,54204-3"
"THI" 27200 "Thiamphenicol" "Phenicols" "J01BA02,QJ01BA02,QJ51BA02" "Amphenicols" "Amphenicols" "thiaph" "armai,dextrosulfenidol,dextrosulphenidol,igralin,racefenicol,racefenicolo,racefenicolum,raceophenidol,thiamphenicolum,thiocymetin,thiophenicol,tiamfenicol,tiamfenicolo,urfamycine" 1.5 "g" 1.5 "g" "41723-8,41724-6,41725-3,54169-8"
"TAT" 9568512 "Thioacetazone" "Antimycobacterials" "J04AK07,QJ04AK07" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "NA" "NA" "NA"
"THI1" "Thioacetazone/isoniazid" "Antimycobacterials" "J04AM04,QJ04AM04" "Drugs for treatment of tuberculosis" "Combinations of drugs for treatment of tuberculosis" "NA" "NA" "NA"
"TIA" 656958 "Tiamulin" "Other antibacterials" "QJ01XQ01" "tiamul" "denagard,thiamutilin,tiamulina,tiamuline,tiamulinum" "35846-5,35847-3,35848-1,87589-8"
"TIC" 36921 "Ticarcillin" "Beta-lactams/penicillins" "J01CA13,QJ01CA13" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "tc,ti,tic,tica,ticarc" "ticar,ticarcilina,ticarcilline,ticarcillinum,timentin" 15 "g" "18994-4,18995-1,25254-4,4054-3,4055-0,499-4,500-9,501-7,502-5,503-3,504-1,505-8,506-6,55716-5,55717-3,55718-1,55719-9,7053-2,7054-0"
"TCC" 6437075 "Ticarcillin/clavulanic acid" "Beta-lactams/penicillins" "J01CR03,QJ01CR03" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "t/c,tcc,ticcla,ticl,tim,tlc" "augpenin" 15 "g" "NA"
"TIA" 656958 "Tiamulin" "Other" "QJ01XQ01" "tiamul" "denagard,thiamutilin,tiamulina,tiamuline,tiamulinum" "35846-5,35847-3,35848-1,87589-8"
"TIC" 36921 "Ticarcillin" "Penicillins,Beta-lactams" "J01CA13,QJ01CA13" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "tc,ti,tic,tica,ticarc" "ticar,ticarcilina,ticarcilline,ticarcillinum,timentin" 15 "g" "18994-4,18995-1,25254-4,4054-3,4055-0,499-4,500-9,501-7,502-5,503-3,504-1,505-8,506-6,55716-5,55717-3,55718-1,55719-9,7053-2,7054-0"
"TCC" 6437075 "Ticarcillin/clavulanic acid" "Penicillins,Beta-lactams,Beta-lactamase inhibitors" "J01CR03,QJ01CR03" "Beta-lactam antibacterials, penicillins" "Combinations of penicillins, incl. beta-lactamase inhibitors" "t/c,tcc,ticcla,ticl,tim,tlc" "augpenin" 15 "g" "NA"
"TGC" 54686904 "Tigecycline" "Tetracyclines" "J01AA12,QJ01AA12" "Tetracyclines" "Tetracyclines" "tgc,tig,tige,tigecy" "tigeciclina,tigecyclin,tigecyclinehydrate,tigilcycline,tygacil" 0.1 "g" "101499-2,42354-1,42355-8,42356-6,42357-4,55158-0"
"TMN" "Tigemonam" "Monobactams" "NA" "NA" "NA" "NA"
"TBQ" 65592 "Tilbroquinol" "Fluoroquinolones" "P01AA05" "NA" "tilbroquinolum" "NA"
"TIP" 24860548 "Tildipirosin" "Macrolides/lincosamides" "QJ01FA96" "NA" "zuprevo" "100060-3,88375-1,88377-7"
"TIL" 5282521 "Tilmicosin" "Macrolides/lincosamides" "QJ01FA91" "tilmic" "micotil,pulmotil,tilmicosina,tilmicosine,tilmicosinum,tilmovet" "35849-9,35850-7,35851-5,87588-0"
"TIN" 5479 "Tinidazole" "Other antibacterials" "G01AF21,J01XD02,P01AB02,QG01AF21,QJ01XD02,QP51AA02" "Other antibacterials" "Imidazole derivatives" "tini" "amtiba,bioshik,fasigin,fasigyn,glongyn,haisigyn,isotinidazole,pletil,protozol,simplotan,sorquetan,symplotan,tindamax,tindazole,tinidazolum,tricolam,trimonase" 2 "g" 1.5 "g" "54928-7,55720-7,55721-5,55722-3"
"TMN" "Tigemonam" "Monobactams,Beta-lactams" "NA" "NA" "NA" "NA"
"TBQ" 65592 "Tilbroquinol" "Fluoroquinolones,Quinolones" "P01AA05" "NA" "tilbroquinolum" "NA"
"TIP" 24860548 "Tildipirosin" "Macrolides" "QJ01FA96" "NA" "zuprevo" "100060-3,88375-1,88377-7"
"TIL" 5282521 "Tilmicosin" "Macrolides" "QJ01FA91" "tilmic" "micotil,pulmotil,tilmicosina,tilmicosine,tilmicosinum,tilmovet" "35849-9,35850-7,35851-5,87588-0"
"TIN" 5479 "Tinidazole" "Other" "G01AF21,J01XD02,P01AB02,QG01AF21,QJ01XD02,QP51AA02" "Other antibacterials" "Imidazole derivatives" "tini" "amtiba,bioshik,fasigin,fasigyn,glongyn,haisigyn,isotinidazole,pletil,protozol,simplotan,sorquetan,symplotan,tindamax,tindazole,tinidazolum,tricolam,trimonase" 2 "g" 1.5 "g" "54928-7,55720-7,55721-5,55722-3"
"TCR" 3001386 "Tiocarlide" "Antimycobacterials" "J04AD02,QJ04AD02" "Drugs for treatment of tuberculosis" "Thiocarbamide derivatives" "NA" "aethoksid,aethoxydum,amixyl,datanil,disocarban,disoxyl,ethoxide,etocarlid,etocarlida,etocarlide,etocarlidum,etoksid,thiocarlide,tiocarlid,tiocarlida,tiocarlidum" 7 "g" "NA"
"TDC" 10247721 "Tiodonium chloride" "Other antibacterials" "NA" "NA" "tiodonium" "NA"
"TXC" 65788 "Tioxacin" "Fluoroquinolones" "NA" "NA" "tioxacine,tioxacino,tioxacinum" "NA"
"TIZ" 394397 "Tizoxanide" "Other antibacterials" "NA" "NA" "NA" "73585-2,73607-4,73629-8"
"TDC" 10247721 "Tiodonium chloride" "Other" "NA" "NA" "tiodonium" "NA"
"TXC" 65788 "Tioxacin" "Fluoroquinolones,Quinolones" "NA" "NA" "tioxacine,tioxacino,tioxacinum" "NA"
"TIZ" 394397 "Tizoxanide" "Other" "NA" "NA" "NA" "73585-2,73607-4,73629-8"
"TOB" 36294 "Tobramycin" "Aminoglycosides" "J01GB01,QJ01GB01,QS01AA12,S01AA12" "Aminoglycoside antibacterials" "Other aminoglycosides" "nn,tm,to,tob,tobr,tobram" "aktob,bethkis,distobram,gotabiotic,kitabis,nebcin,nebicin,nebramycin,tenebrimycin,tenemycin,tobacin,tobracin,tobradex,tobradistin,tobralex,tobramaxin,tobramicin,tobramicina,tobramitsetin,tobramycetin,tobramycine,tobramycinum,tobrased,tobrex" 0.24 "g" "101496-8,13584-8,17808-7,18996-9,22750-4,22751-2,22752-0,25227-0,25800-4,31094-6,31095-3,31096-1,35239-3,35670-9,4057-6,4058-4,4059-2,507-4,508-2,509-0,50927-3,510-8,52962-8,59380-6,7055-7,80966-5"
"TOH" "Tobramycin-high" "Aminoglycosides" "NA" "tobra high,tobramycin high,tohl" "NA" "NA"
"TFX" 5517 "Tosufloxacin" "Fluoroquinolones" "J01MA22,QJ01MA22,QS01AE09,S01AE09" "tosufl" "NA" 0.45 "g" "100061-1,76146-0"
"TFX" 5517 "Tosufloxacin" "Fluoroquinolones,Quinolones" "J01MA22,QJ01MA22,QS01AE09,S01AE09" "tosufl" "NA" 0.45 "g" "100061-1,76146-0"
"TMP" 5578 "Trimethoprim" "Trimethoprims" "J01EA01,QJ01EA01,QJ51EA01" "Sulfonamides and trimethoprim" "Trimethoprim and derivatives" "t,tmp,tr,tri,trim,w" "abaprim,anitrim,antrima,antrimox,bacdan,bacidal,bacide,bacin,bacterial,bacticel,bactifor,bactoprim,bactramin,bencole,bethaprim,biosulten,briscotrim,chemotrin,colizole,conprim,cotrimel,deprim,dosulfin,duocide,esbesul,espectrin,euctrim,exbesul,fermagex,fortrim,futin,ikaprim,infectotrimet,instalac,kombinax,lagatrim,lastrim,lescot,monoprim,monotrim,monotrimin,novotrimel,omstat,pancidim,proloprim,protrin,purbal,resprim,roubac,roubal,salvatrim,setprin,sinotrim,stopan,streptoplus,sugaprim,sulfamar,sulfoxaprim,sulthrim,sultrex,syraprim,tiempe,trimethioprim,trimethoprime,trimethoprimum,trimethopriom,trimetoprim,trimetoprima,trimexol,trimezol,trimogal,trimono,trimopan,triprim,trisul,trisulcom,trisulfam,trisural,uretrim,urobactrim,utetrin,velaten,wellcoprim,wellcoprin,xeroprim,zamboprim" 0.4 "g" 0.4 "g" "101495-0,11005-6,17747-7,18997-7,18998-5,20387-7,23614-1,23631-5,25273-4,32342-8,4079-0,4080-8,4081-6,511-6,512-4,513-2,514-0,515-7,516-5,517-3,518-1,55584-7,7056-5,7057-3,80552-3,80973-1"
"SXT" 358641 "Trimethoprim/sulfamethoxazole" "Trimethoprims" "J01EE01" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "cot,cotrim,sxt,t/s,tms,trisul,trsu,trsx,ts" "abacin,abactrim,agoprim,alfatrim,aposulfatrim,bacteral,bactilen,bactiver,bacton,bactoreduct,bactrim,bactrizol,bactromin,bactropin,baktar,benzenesulfonamide,berlocid,bibacrim,biseptol,centran,centrin,chemitrim,chemotrim,ciplin,comox,cotribene,cotrim,cotrimhexal,cotrimoxazol,cotrimoxazole,cotrimstada,cotriver,dibaprim,drylin,duratrimet,eltrianyl,escoprim,eslectin,esteprim,eusaprim,fectrim,gamazole,gantanol,gantaprim,gantaprin,gantrim,groprim,helveprim,imexim,insozalin,jenamoxazol,kemoprim,kepinol,laratrim,linaris,maxtrim,metoxal,microtrim,mikrosid,momentol,nopil,oecotrim,omsat,oriprim,oxaprim,pantoprim,potrox,primazole,radonil,septra,septrim,servitrim,sigaprim,sigaprin,sulfatrim,sulfotrim,sulfotrimin,sulmeprim,sulprim,sumetrolim,supracombin,suprim,tacumil,teleprim,teleprin,thiocuran,tribakin,trifen,trigonyl,trimedin,trimesulf,trimethoprimsulfa,trimetoger,trimexazol,trimezole,trimforte,trimosulfa,uroplus" "101495-0,18998-5,20387-7,23631-5,25273-4,32342-8,4081-6,515-7,516-5,517-3,518-1,7057-3"
"TRL" 202225 "Troleandomycin" "Macrolides/lincosamides" "J01FA08,QJ01FA08" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "aovine,cyclamycin,evramicina,matromicina,oleandocetin,oleandocetine,tekmisin,treolmicina,tribiocillina,triocetin,triolan,troleandomicina,troleandomycine,troleandomycinum,viamicina,wytrion" 1 "g" "18999-3,519-9,520-7,521-5,522-3"
"TRO" 55886 "Trospectomycin" "Other antibacterials" "NA" "trospe" "trospectinomycin,trospectomicina,trospectomycine,trospectomycinum" "NA"
"TVA" 62959 "Trovafloxacin" "Fluoroquinolones" "J01MA13,QJ01MA13" "Quinolone antibacterials" "Fluoroquinolones" "trov,trovaf" "trovan,turvel" 0.2 "g" 0.2 "g" "23642-2,23643-0,35855-6,7058-1"
"TUL" 9832301 "Tulathromycin" "Macrolides/lincosamides" "QJ01FA94" "tulath" "arovyn,draxxin,increxxa,macrosyn,tulieve,tulissin" "76149-4,87798-5"
"TYL" 5280440 "Tylosin" "Macrolides/lincosamides" "QJ01FA90,QJ51FA90" "tylo" "fradizine,tilosina,tylan,tylocine,tylosine,tylosinum,vubityl" "35856-4,35857-2,35858-0,87587-2"
"TYL1" 6441094 "Tylvalosin" "Macrolides/lincosamides" "QJ01FA92" "tvn" "aivlosin" "101526-2,87586-4"
"PRU1" 124225 "Ulifloxacin (Prulifloxacin)" "Other antibacterials" "NA" "NA" "NA" "NA"
"SXT" 358641 "Trimethoprim/sulfamethoxazole" "Trimethoprims,Sulfonamides" "J01EE01" "Sulfonamides and trimethoprim" "Combinations of sulfonamides and trimethoprim, incl. derivatives" "cot,cotrim,sxt,t/s,tms,trisul,trsu,trsx,ts" "abacin,abactrim,agoprim,alfatrim,aposulfatrim,bacteral,bactilen,bactiver,bacton,bactoreduct,bactrim,bactrizol,bactromin,bactropin,baktar,benzenesulfonamide,berlocid,bibacrim,biseptol,centran,centrin,chemitrim,chemotrim,ciplin,comox,cotribene,cotrim,cotrimhexal,cotrimoxazol,cotrimoxazole,cotrimstada,cotriver,dibaprim,drylin,duratrimet,eltrianyl,escoprim,eslectin,esteprim,eusaprim,fectrim,gamazole,gantanol,gantaprim,gantaprin,gantrim,groprim,helveprim,imexim,insozalin,jenamoxazol,kemoprim,kepinol,laratrim,linaris,maxtrim,metoxal,microtrim,mikrosid,momentol,nopil,oecotrim,omsat,oriprim,oxaprim,pantoprim,potrox,primazole,radonil,septra,septrim,servitrim,sigaprim,sigaprin,sulfatrim,sulfotrim,sulfotrimin,sulmeprim,sulprim,sumetrolim,supracombin,suprim,tacumil,teleprim,teleprin,thiocuran,tribakin,trifen,trigonyl,trimedin,trimesulf,trimethoprimsulfa,trimetoger,trimexazol,trimezole,trimforte,trimosulfa,uroplus" "101495-0,18998-5,20387-7,23631-5,25273-4,32342-8,4081-6,515-7,516-5,517-3,518-1,7057-3"
"TRL" 202225 "Troleandomycin" "Macrolides" "J01FA08,QJ01FA08" "Macrolides, lincosamides and streptogramins" "Macrolides" "NA" "aovine,cyclamycin,evramicina,matromicina,oleandocetin,oleandocetine,tekmisin,treolmicina,tribiocillina,triocetin,triolan,troleandomicina,troleandomycine,troleandomycinum,viamicina,wytrion" 1 "g" "18999-3,519-9,520-7,521-5,522-3"
"TRO" 55886 "Trospectomycin" "Other" "NA" "trospe" "trospectinomycin,trospectomicina,trospectomycine,trospectomycinum" "NA"
"TVA" 62959 "Trovafloxacin" "Fluoroquinolones,Quinolones" "J01MA13,QJ01MA13" "Quinolone antibacterials" "Fluoroquinolones" "trov,trovaf" "trovan,turvel" 0.2 "g" 0.2 "g" "23642-2,23643-0,35855-6,7058-1"
"TUL" 9832301 "Tulathromycin" "Macrolides" "QJ01FA94" "tulath" "arovyn,draxxin,increxxa,macrosyn,tulieve,tulissin" "76149-4,87798-5"
"TYL" 5280440 "Tylosin" "Macrolides" "QJ01FA90,QJ51FA90" "tylo" "fradizine,tilosina,tylan,tylocine,tylosine,tylosinum,vubityl" "35856-4,35857-2,35858-0,87587-2"
"TYL1" 6441094 "Tylvalosin" "Macrolides" "QJ01FA92" "tvn" "aivlosin" "101526-2,87586-4"
"PRU1" 124225 "Ulifloxacin (Prulifloxacin)" "Other" "NA" "NA" "NA" "NA"
"VAN" 14969 "Vancomycin" "Glycopeptides" "A07AA09,J01XA01,QA07AA09,QJ01XA01,QS01AA28,S01AA28" "Other antibacterials" "Glycopeptide antibacterials" "va,van,vanc,vancom" "vancocin,vancoled,vancomicina,vancomycine,vancomycinum" 2 "g" 2 "g" "13586-3,13587-1,19000-9,20578-1,23615-8,25228-8,31012-8,39092-2,39796-8,39797-6,4089-9,4090-7,4091-5,4092-3,50938-0,523-1,524-9,525-6,526-4,59381-4,7059-9,92241-9,97657-1"
"VAM" "Vancomycin-macromethod" "Glycopeptides" "NA" "NA" "NA" "NA"
"VIO" 135398671 "Viomycin" "Antimycobacterials" "NA" "NA" "florimycin,floromycin,vioactane,viocin,viomicin,viomicina,viomycine,viomycinum" "19001-7,23616-6,527-2,528-0,529-8,530-6"
"VIR" 11979535 "Virginiamycine" "Other antibacterials" "NA" "NA" "NA" "NA"
"VOR" 71616 "Voriconazole" "Antifungals/antimycotics" "J02AC03,QJ02AC03" "Antimycotics for systemic use" "Triazole derivatives" "vori,vorico,vrc" "vfend,voriconazol,voriconazolum,voriconzole,vorikonazole" 0.4 "g" 0.4 "g" "32379-0,35862-2,35863-0,38370-3,41199-1,41200-7,53902-3,73676-9,80553-1,80651-3"
"XBR" 72144 "Xibornol" "Other antibacterials" "J01XX02,QJ01XX02" "Other antibacterials" "Other antibacterials" "NA" "bactacine,bracen,nanbacine,xibornolo,xibornolum" "NA"
"ZID" 77846445 "Zidebactam" "Other antibacterials" "NA" "NA" "zidebactamsalt" "NA"
"ZFD" "Zoliflodacin" "NA" "zol" "NA" "NA"
"VIR" 11979535 "Virginiamycine" "Other" "NA" "NA" "NA" "NA"
"VOR" 71616 "Voriconazole" "Antifungals" "J02AC03,QJ02AC03" "Antimycotics for systemic use" "Triazole derivatives" "vori,vorico,vrc" "vfend,voriconazol,voriconazolum,voriconzole,vorikonazole" 0.4 "g" 0.4 "g" "32379-0,35862-2,35863-0,38370-3,41199-1,41200-7,53902-3,73676-9,80553-1,80651-3"
"XBR" 72144 "Xibornol" "Other" "J01XX02,QJ01XX02" "Other antibacterials" "Other antibacterials" "NA" "bactacine,bracen,nanbacine,xibornolo,xibornolum" "NA"
"ZID" 77846445 "Zidebactam" "Beta-lactamase inhibitors" "NA" "NA" "zidebactamsalt" "NA"
"ZFD" "Zoliflodacin" "Spiropyrimidinetriones" "NA" "zol" "NA" "NA"

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@@ -1,8 +1,8 @@
pattern regular_expr case_sensitive affect_ab_name affect_mo_name en ar bn zh cs da nl fi fr de el hi id it ja ko no pl pt ro ru es sw sv tr uk ur vi
language name English FALSE FALSE FALSE FALSE English Arabic Bengali Chinese Czech Danish Dutch Finnish French German Greek Hindi Indonesian Italian Japanese Korean Norwegian Polish Portuguese Romanian Russian Spanish Swahili Swedish Turkish Ukrainian Urdu Vietnamese
language name FALSE FALSE FALSE FALSE English العربية ইংরেজি 汉语 Čeština Dansk Nederlands Suomi Français Deutsch Ελληνικά हिन्दी Inggris Italiano 日本語 영어 Norsk Polski Português Română Русский Español Kiswahili Svenska Türkçe Українська انگریزی Tiếng Anh
Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Coagulase-negative Staphylococcus المكورات العنقودية سالبة التخثر কোয়াগুলেজ-নেগেটিভ স্ট্যাফিলোকক্কাস 凝固酶阴性葡萄球菌 Koaguláza-negativní stafylokok Koagulase-negative stafylokokker Coagulase-negatieve Staphylococcus Koagulaasinegatiivinen stafylokokki Staphylococcus à coagulase négative Koagulase-negative Staphylococcus Σταφυλόκοκκος με αρνητική πηκτικότητα कोएगुलेज़-ऩेगेटिव स्टैफिलोकोकस Stafilokokus koagulase-negatif Staphylococcus negativo coagulasi コアグラーゼ陰性ブドウ球菌 코아귤라제 음성 포도상구균 Koagulase-negative stafylokokker Staphylococcus koagulazoujemny Staphylococcus coagulase negativo Stafilococ coagulazo-negativ Коагулазоотрицательный стафилококк Staphylococcus coagulasa negativo Staphylococcus wasiokuwa na coagulase Koagulasnegativa stafylokocker Koagülaz-negatif Stafilokok Коагулазонегативний стафілокок کواگولیز منفی اسٹیفیلوکوکس Staphylococcus âm tính với coagulase
Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Coagulase-positive Staphylococcus المكورات العنقودية موجبة التخثر কোয়াগুলেজ-পজিটিভ স্ট্যাফিলোকক্কাস 凝固酶阳性葡萄球菌 Koagulázopozitivní stafylokok Koagulase-positive stafylokokker Coagulase-positieve Staphylococcus Koagulaasipositiivinen stafylokokki Staphylococcus à coagulase positif Koagulase-positive Staphylococcus Σταφυλόκοκκος θετικός στην πήξη कोएगुलेज़-पॉज़िटिव स्टैफिलोकोकस Stafilokokus koagulase-positif Staphylococcus positivo coagulasi コアグラーゼ陽性ブドウ球菌 코아귤라제 양성 포도상구균 Koagulase-positive stafylokokker Staphylococcus koagulazo-dodatni Staphylococcus coagulase positivo Stafilococul coagulazo-pozitiv Коагулазоположительный стафилококк Staphylococcus coagulasa positivo Staphylococcus wenye coagulase Koagulaspositiva stafylokocker Koagülaz-pozitif Stafilokok Коагулазопозитивний стафілокок کواگولیز مثبت اسٹیفیلوکوکس Staphylococcus dương tính với coagulase
Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Coagulase-negative Staphylococcus المكورات العنقودية سالبة التخثر কোয়াগুলেজ-নেগেটিভ স্ট্যাফিলোকক্কাস 凝固酶阴性葡萄球菌 Koaguláza-negativní stafylokok Koagulase-negative stafylokokker Coagulase-negatieve Staphylococcus Koagulaasinegatiivinen stafylokokki Staphylococcus à coagulase négative Koagulase-negative Staphylococcus Σταφυλόκοκκος με αρνητική πηκτικότητα कोएगुलेज़-ऩेगेटिव स्टैफिलोकोकस Stafilokokus koagulase-negatif Stafilococco coagulasi-negativo コアグラーゼ陰性ブドウ球菌 코아귤라제 음성 포도상구균 Koagulase-negative stafylokokker Staphylococcus koagulazoujemny Staphylococcus coagulase negativo Stafilococ coagulazo-negativ Коагулазоотрицательный стафилококк Staphylococcus coagulasa negativo Staphylococcus wasiokuwa na coagulase Koagulasnegativa stafylokocker Koagülaz-negatif Stafilokok Коагулазонегативний стафілокок کواگولیز منفی اسٹیفیلوکوکس Staphylococcus âm tính với coagulase
Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Coagulase-positive Staphylococcus المكورات العنقودية موجبة التخثر কোয়াগুলেজ-পজিটিভ স্ট্যাফিলোকক্কাস 凝固酶阳性葡萄球菌 Koagulázopozitivní stafylokok Koagulase-positive stafylokokker Coagulase-positieve Staphylococcus Koagulaasipositiivinen stafylokokki Staphylococcus à coagulase positif Koagulase-positive Staphylococcus Σταφυλόκοκκος θετικός στην πήξη कोएगुलेज़-पॉज़िटिव स्टैफिलोकोकस Stafilokokus koagulase-positif Stafilococco coagulasi-positivo コアグラーゼ陽性ブドウ球菌 코아귤라제 양성 포도상구균 Koagulase-positive stafylokokker Staphylococcus koagulazo-dodatni Staphylococcus coagulase positivo Stafilococul coagulazo-pozitiv Коагулазоположительный стафилококк Staphylococcus coagulasa positivo Staphylococcus wenye coagulase Koagulaspositiva stafylokocker Koagülaz-pozitif Stafilokok Коагулазопозитивний стафілокок کواگولیز مثبت اسٹیفیلوکوکس Staphylococcus dương tính với coagulase
Beta-haemolytic Streptococcus TRUE TRUE FALSE TRUE Beta-haemolytic Streptococcus العقديات الحالة للدم من النوع بيتا বিটা-হেমোলাইটিক স্ট্রেপটোকক্কাস β-溶血性链球菌 Beta-hemolytický streptokok Beta-haemolytiske streptokokker Beta-hemolytische Streptococcus Beeta-hemolyyttinen streptokokki Streptococcus Bêta-hémolytique Beta-hämolytischer Streptococcus Β-αιμολυτικός στρεπτόκοκκος बीटा-हीमोलिटिक स्ट्रेप्टोकोकस Streptokokus beta-hemolitik Streptococcus Beta-emolitico ベータ溶血性レンサ球菌 베타 용혈성 연쇄상구균 Beta-hemolytiske streptokokker Streptococcus beta-hemolityczny Streptococcus Beta-hemolítico Streptococ beta-hemolitic Бета-гемолитический стрептококк Streptococcus Beta-hemolítico Streptococcus wa beta-hemolitiki Beta-hemolytiska streptokocker Beta-hemolitik Streptokok Бета-гемолітичний стрептокок بیٹا ہیمولائٹک اسٹریپٹوکوکس Streptococcus tan máu beta
unknown Gram-negatives TRUE TRUE FALSE TRUE unknown Gram-negatives سالبة الجرام غير معروفة অজানা গ্রাম-নেগেটিভ 不明革兰氏阴性菌 neznámé gramnegativní ukendte Gram-negative onbekende Gram-negatieven tuntemattomat gramnegatiiviset Gram négatifs inconnus unbekannte Gramnegativen άγνωστοι αρνητικοί κατά Gram अज्ञात ग्राम-ऩेगेटिव्स Gram negatif tidak diketahui Gram negativi sconosciuti 不明なグラム陰性菌 알 수 없는 그람 음성균 ukjent Gram-negative Nieznane bakterie Gram-ujemne Gram negativos desconhecidos Gram-negative necunoscute неизвестные грамотрицательные Gram negativos desconocidos Gram hasi wasiojulikana okända gramnegativa bakterier bilinmeyen Gram-negatifler невідомі грамнегативні نامعلوم گرام منفی Gram âm chưa xác định
unknown Gram-positives TRUE TRUE FALSE TRUE unknown Gram-positives موجبة الجرام غير معروفة অজানা গ্রাম-পজিটিভ 不明革兰氏阳性菌 neznámé grampozitivní ukendte Gram-positive onbekende Gram-positieven tuntemattomat grampositiiviset Gram positifs inconnus unbekannte Grampositiven άγνωστοι θετικοί κατά Gram अज्ञात ग्राम-पॉज़िटिव्स Gram positif tidak diketahui Gram positivi sconosciuti 未知のグラム陽性菌 알 수 없는 그람 양성균 ukjent Gram-positive Nieznane bakterie Gram-dodatnie Gram positivos desconhecidos Gram-pozitive necunoscute неизвестные грамположительные Gram positivos desconocidos Gram chanya wasiojulikana okända Gram-positiva bilinmeyen Gram-pozitifler невідомі грампозитивні نامعلوم گرام مثبت Gram dương chưa xác định
@@ -280,7 +280,8 @@ Antifungals FALSE TRUE TRUE FALSE Antifungals مضادات الفطريات অ
Antifungals/antimycotics FALSE TRUE TRUE FALSE Antifungals/antimycotics مضادات الفطريات/الفطريات المُمرِضة অ্যান্টিফাঙ্গালস/অ্যান্টিমাইকোটিকস 抗真菌药/抗真菌药 Antimykotika/antimykotika Antimykotika/antimykotika Antifungica/antimycotica Sienilääkkeet/antimykootit Antifongiques/antimycotiques Antimykotika/Antimykotika Αντιμυκητιασικά/αντιμυκητιασικά प्रतिफफूंद/प्रतिमाइकोटिक्स Antijamur/antimikotik Antifungini/antimicotici 抗真菌剤/抗真菌剤 항진균제/항진균성약물 Soppdrepende midler/antimykotika Środki przeciwgrzybicze/przeciwmikotyczne Antifúngicos/antimicóticos Antifungice/antimicrotice Противогрибковые препараты/антимикотики Antifúngicos/antimicóticos Dawa za kuua kuvu/antimaikoti Antimykotika/antimykotika Antifungaller/antimikotikler Протигрибкові засоби/антимікотики فنگس/اینٹی مائیکوٹک Thuốc chống nấm/kháng nấm
Antimycobacterials FALSE TRUE TRUE FALSE Antimycobacterials مضادات الفطريات الحمضية المقاومة অ্যান্টিমাইকোব্যাকটেরিয়ালস 抗霉菌素类 Antimykobakteriální látky Antimycobakterier Antimycobacteriele middelen Antimykobakteerit Antimycobactériens Antimykobakterielle Mittel Αντιμυκοβακτηριακά प्रतिमाइकोबैक्टीरियल्स Antimikobakteri Antimicobatterici 抗マイコバクテリア薬 항항산균제 Antimykobakterielle midler Środki przeciwgrzybicze Antimycobacterials Antimicobacteriene Антимикобактериальные препараты Antimicrobianos Dawa dhidi ya mykobakteria Antimykobakterier Antimikobakteriyeller Засоби, що діють на мікобактерії اینٹی مائیکوبیکٹیریل Thuốc chống trực khuẩn kháng axit
Beta-lactams/penicillins FALSE TRUE TRUE FALSE Beta-lactams/penicillins البيتا-لاكتامات/البنسلينات বেটা-ল্যাকটামস/পেনিসিলিনস β-内酰胺类/青霉素类 Beta-laktamy/peniciliny Beta-lactamer/penicilliner Beta-lactams/penicillines Beetalaktaamit/penisilliinit Bêta-lactamines/pénicillines Beta-Lactame/Penicilline Β-λακτάμες/πενικιλλίνες बीटा-लैक्टाम्स/पेनिसिलिन्स Beta-laktam/penisilin Beta-lattami/penicilline β-ラクタム系/ペニシリン系抗菌薬 베타-락탐/페니실린 Betalaktamer/penicilliner Beta-laktamy/penicyliny Beta-lactâmicas/penicilinas Beta-lactame/peniciline Бета-лактамы/пенициллины Beta-lactámicos/penicilinas Betalaktamu/penisilini Beta-laktamer/penicilliner Beta-laktamlar/penisilinler Бета-лактами/пеніциліни بیٹا لیکٹمز/پینسلنز Beta-lactam/penicillin
Betalactams FALSE TRUE TRUE FALSE Betalactams البيتا-لاكتامات বেটা-ল্যাকটামস β-内酰胺类 Beta-laktamy Beta-lactamer Beta-lactams Beetalaktaamit Bêta-lactamines Beta-Lactame Β-λακτάμες बीटा-लैक्टाम्स Beta-laktam Beta-lattami β-ラクタム系抗菌薬 베타-락탐 Betalaktamer Beta-laktamy Beta-lactâmicas Beta-lactame Бета-лактамы Beta-lactámicos Betalaktamu Betalaktamer Beta-laktamlar Бета-лактами بیٹا لیکٹمز Beta-lactam
Beta-lactams FALSE TRUE TRUE FALSE Betalactams البيتا-لاكتامات বেটা-ল্যাকটামস β-内酰胺类 Beta-laktamy Beta-lactamer Beta-lactams Beetalaktaamit Bêta-lactamines Beta-Lactame Β-λακτάμες बीटा-लैक्टाम्स Beta-laktam Beta-lattami β-ラクタム系抗菌薬 베타-락탐 Betalaktamer Beta-laktamy Beta-lactâmicas Beta-lactame Бета-лактамы Beta-lactámicos Betalaktamu Betalaktamer Beta-laktamlar Бета-лактами بیٹا لیکٹمز Beta-lactam
Beta-lactamase inhibitors FALSE TRUE TRUE FALSE Beta-lactamase inhibitors مثبطات بيتا-لاكتاماز বেটা-ল্যাকটামেজ ইনহিবিটরস β-内酰胺酶抑制剂 Inhibitory beta-laktamázy Beta-laktamasehæmmere Beta-lactamaseremmers Beetalaktamaasin estäjät Inhibiteurs de bêta-lactamase Beta-Laktamase-Inhibitoren Αναστολείς β-λακταμάσης बीटा-लैक्टामेज़ अवरोधक Inhibitor beta-laktamase Inibitori delle beta-lattamasi β-ラクタマーゼ阻害薬 베타-락타마제 억제제 Beta-laktamasehemmere Inhibitory beta-laktamaz Inibidores da beta-lactamase Inhibitori de beta-lactamază Ингибиторы бета-лактамаз Inhibidores de beta-lactamasa Vizuizi vya beta-laktamasi Beta-laktamashämmare Beta-laktamaz inhibitörleri Інгібітори бета-лактамаз بیٹا لیکٹامیز انہیبیٹرز Chất ức chế beta-lactamase
Carbapenems FALSE TRUE TRUE FALSE Carbapenems الكاربابينيمات কার্বাপেনেমস 碳青霉烯类 Karbapenemy Carbapenemer Carbapenems Karbapeneemit Carbapénèmes Carbapeneme Καρβαπενέμες कार्बापेनेम्स Karbapenem Carbapenemi カルバペネム系抗生物質 카르바페넴 Carbapenemer Karbapenemy Carbapenêmicos Carbapeneme Карбапенемы Carbapenémicos Karbapenemu Carbapenemer Karbapenemler Карбапенеми کارباپینیمز Carbapenem
Cephalosporins FALSE TRUE TRUE FALSE Cephalosporins السيفالوسبورينات সেফালোসপরিনস 头孢菌素类 Cefalosporiny Cefalosporiner Cefalosporines Kefalosporiinit Céphalosporines Cephalosporine Κεφαλοσπορίνες सेफालोस्पोरिन्स Sefalosporin Cefalosporine セファロスポリン 세팔로스포린 Cefalosporiner Cefalosporyny Cefalosporinas Cefalosporine Цефалоспорины Cefalosporinas Sefalosporini Kefalosporiner Sefalosporinler Цефалоспорини سیفالوسپورنز Cephalosporin
Cephalosporins (1st gen.) FALSE TRUE TRUE FALSE Cephalosporins (1st gen.) السيفالوسبورينات (الجيل الأول) সেফালোসপরিনস (১ম প্রজন্ম) 头孢菌素类(第一代) Cefalosporiny (1. gen.) Cefalosporiner (1. gen.) Cefalosporines (1e gen.) Kefalosporiinit (1. suk.) Céphalosporines (1ère génération) Cephalosporine (1. Gen.) Κεφαλοσπορίνες (1ου γένους) सेफालोस्पोरिन्स (प्रथम पीढ़ी) Sefalosporin (generasi 1) Cefalosporine (1° gen.) セファロスポリン系抗生物質第1世代 세팔로스포린 (1세대) Cefalosporiner (1. generasjon) Cefalosporyny (1. gen.) Cefalosporinas (1º género) Cefalosporine (prima generație) Цефалоспорины (1-го пок.) Cefalosporinas (1er gen.) Sefalosporini (kizazi cha 1) Kefalosporiner (första gen.) Sefalosporinler (1. kuşak) Цефалоспорини (1 пок.) سیفالوسپورنز (پہلی نسل) Cephalosporin (thế hệ 1)
@@ -302,6 +303,7 @@ Other antibacterials FALSE TRUE TRUE FALSE Other antibacterials مضادات ب
Oxazolidinones FALSE TRUE TRUE FALSE Oxazolidinones الأوكسازوليدينونات অক্সাজোলিডিনোনস 恶唑烷酮类 Oxazolidinone Oxazolidinones Oxazolidinonen Oxazolidinonit Oxazolidinones Oxazolidinone Οξαζολιδινόνες ऑक्साज़ोलिडिनोन्स Oksazolidinon Oxazolidinonas オキサゾリジノン 옥사졸리디논 Oxazolidinones Oksazolidynony Oxazolidinonas Oxazolidinone Оксазолидиноны Oxazolidinonas Oxazolidinoni Oxazolidinones Oxazolidinonlar Оксазолідинони اوکسا زولڈی نونز Oxazolidinone
Penicillins FALSE TRUE TRUE FALSE Penicillins البنسلينات পেনিসিলিনস 青霉素类 Пенициллины Penicillins Penicillines Penisilliinit Pénicillines Penicillins Πενικιλίνες पेनिसिलिन्स Penisilin Penicilinas ペニシリン 페니실린 Penicillins Penicyliny Penicilinas Peniciline Пенициллины Penicilinas Penisilini Penicillins Penisilinler Пеніциліни پینسلن Penicillin
Phenicols FALSE TRUE TRUE FALSE Phenicols الفينيكولات ফেনিকলস 酚类抗生素 Phenikoly Fenicoler Fenicols Fenikolit Phénicols Phenicol Φαινικόλες फेनिकोल्स Fenikol Fenicoli フェニコール 페니콜 Fenicoler Fenikole Fenicóis Fenicoli Фениколы Fenicoles Fenikoli Fenicoler Fenikoller Фенікони فینیکولز Phenicols
Phosphonics FALSE TRUE TRUE FALSE Phosphonics الفوسفونيّات ফসফোনিকস 膦酸类 Phosphonáty Fosfonater Fosfonaten Fosfonaatit Phosphoniques Phosphonates Φωσφονικά फॉस्फ़ोनिक्स Fosfonik Fosfonici ホスホン酸系抗菌薬 포스포닉계 Fosfonater Fosfoniany Fosfônicos Fosfonați Фосфоники Fosfónicos Fosfoniki Fosfonater Fosfonikler Фосфоніки فاسفونکس Các hợp chất phosphonic
Polymyxins FALSE TRUE TRUE FALSE Polymyxins البوليميكسينات পলিমিক্সিনস 多粘菌素类 Polymyxiny Polymyxiner Polymyxines Polymysiinit Polymyxines Polymyxine Πολυμυξίνες पॉलीमिक्सिन्स Polimiksin Polimixine ポリミキシン 폴리믹신 Polymyxiner Polimyksyny Polimixinas Polimixine Полимиксины Polimixinas Polimiksini Polymyxiner Polimiksinler Поліміксини پولی مائکسینز Polymyxin
Quinolones FALSE TRUE TRUE FALSE Quinolones الكوينولونات কুইনোলোনস 喹诺酮类 Chinolony Kinoloner Quinolonen Kinolonit Quinolones Quinolone Κινολόνες क्विनोलोन्स Kuinalon Chinoloni キノロン 퀴놀론 Kinoloner Quinolony Quinolones Quinolone Хинолоны Quinolonas Kinoloni Kinoloner Kinolonlar Хінолони کوئنولونز Quinolone
Rifamycins FALSE TRUE TRUE FALSE Rifamycins الريفاميسينات রিফামাইসিনস 利福霉素类 Rifamycine Rifamycins Rifamycinen Rifamysiinit Rifamycines Rifamycine Ριφαμυκίνες रिफामाइसिन्स Rifamisin Rifamicinas リファマイシン 리팜이신 Rifamycins Rifamycyny Rifamycinas Rifamicine Рифамицины Rifamicinas Rifamasini Rifamycins Rifamisinler Рифаміцини ریفامائسنز Rifamycin
1 pattern regular_expr case_sensitive affect_ab_name affect_mo_name en ar bn zh cs da nl fi fr de el hi id it ja ko no pl pt ro ru es sw sv tr uk ur vi
2 language name English FALSE FALSE FALSE FALSE English Arabic Bengali Chinese Czech Danish Dutch Finnish French German Greek Hindi Indonesian Italian Japanese Korean Norwegian Polish Portuguese Romanian Russian Spanish Swahili Swedish Turkish Ukrainian Urdu Vietnamese
3 language name FALSE FALSE FALSE FALSE English العربية ইংরেজি 汉语 Čeština Dansk Nederlands Suomi Français Deutsch Ελληνικά हिन्दी Inggris Italiano 日本語 영어 Norsk Polski Português Română Русский Español Kiswahili Svenska Türkçe Українська انگریزی Tiếng Anh
4 Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Coagulase-negative Staphylococcus المكورات العنقودية سالبة التخثر কোয়াগুলেজ-নেগেটিভ স্ট্যাফিলোকক্কাস 凝固酶阴性葡萄球菌 Koaguláza-negativní stafylokok Koagulase-negative stafylokokker Coagulase-negatieve Staphylococcus Koagulaasinegatiivinen stafylokokki Staphylococcus à coagulase négative Koagulase-negative Staphylococcus Σταφυλόκοκκος με αρνητική πηκτικότητα कोएगुलेज़-ऩेगेटिव स्टैफिलोकोकस Stafilokokus koagulase-negatif Staphylococcus negativo coagulasi Stafilococco coagulasi-negativo コアグラーゼ陰性ブドウ球菌 코아귤라제 음성 포도상구균 Koagulase-negative stafylokokker Staphylococcus koagulazoujemny Staphylococcus coagulase negativo Stafilococ coagulazo-negativ Коагулазоотрицательный стафилококк Staphylococcus coagulasa negativo Staphylococcus wasiokuwa na coagulase Koagulasnegativa stafylokocker Koagülaz-negatif Stafilokok Коагулазонегативний стафілокок کواگولیز منفی اسٹیفیلوکوکس Staphylococcus âm tính với coagulase
5 Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Coagulase-positive Staphylococcus المكورات العنقودية موجبة التخثر কোয়াগুলেজ-পজিটিভ স্ট্যাফিলোকক্কাস 凝固酶阳性葡萄球菌 Koagulázopozitivní stafylokok Koagulase-positive stafylokokker Coagulase-positieve Staphylococcus Koagulaasipositiivinen stafylokokki Staphylococcus à coagulase positif Koagulase-positive Staphylococcus Σταφυλόκοκκος θετικός στην πήξη कोएगुलेज़-पॉज़िटिव स्टैफिलोकोकस Stafilokokus koagulase-positif Staphylococcus positivo coagulasi Stafilococco coagulasi-positivo コアグラーゼ陽性ブドウ球菌 코아귤라제 양성 포도상구균 Koagulase-positive stafylokokker Staphylococcus koagulazo-dodatni Staphylococcus coagulase positivo Stafilococul coagulazo-pozitiv Коагулазоположительный стафилококк Staphylococcus coagulasa positivo Staphylococcus wenye coagulase Koagulaspositiva stafylokocker Koagülaz-pozitif Stafilokok Коагулазопозитивний стафілокок کواگولیز مثبت اسٹیفیلوکوکس Staphylococcus dương tính với coagulase
6 Beta-haemolytic Streptococcus TRUE TRUE FALSE TRUE Beta-haemolytic Streptococcus العقديات الحالة للدم من النوع بيتا বিটা-হেমোলাইটিক স্ট্রেপটোকক্কাস β-溶血性链球菌 Beta-hemolytický streptokok Beta-haemolytiske streptokokker Beta-hemolytische Streptococcus Beeta-hemolyyttinen streptokokki Streptococcus Bêta-hémolytique Beta-hämolytischer Streptococcus Β-αιμολυτικός στρεπτόκοκκος बीटा-हीमोलिटिक स्ट्रेप्टोकोकस Streptokokus beta-hemolitik Streptococcus Beta-emolitico ベータ溶血性レンサ球菌 베타 용혈성 연쇄상구균 Beta-hemolytiske streptokokker Streptococcus beta-hemolityczny Streptococcus Beta-hemolítico Streptococ beta-hemolitic Бета-гемолитический стрептококк Streptococcus Beta-hemolítico Streptococcus wa beta-hemolitiki Beta-hemolytiska streptokocker Beta-hemolitik Streptokok Бета-гемолітичний стрептокок بیٹا ہیمولائٹک اسٹریپٹوکوکس Streptococcus tan máu beta
7 unknown Gram-negatives TRUE TRUE FALSE TRUE unknown Gram-negatives سالبة الجرام غير معروفة অজানা গ্রাম-নেগেটিভ 不明革兰氏阴性菌 neznámé gramnegativní ukendte Gram-negative onbekende Gram-negatieven tuntemattomat gramnegatiiviset Gram négatifs inconnus unbekannte Gramnegativen άγνωστοι αρνητικοί κατά Gram अज्ञात ग्राम-ऩेगेटिव्स Gram negatif tidak diketahui Gram negativi sconosciuti 不明なグラム陰性菌 알 수 없는 그람 음성균 ukjent Gram-negative Nieznane bakterie Gram-ujemne Gram negativos desconhecidos Gram-negative necunoscute неизвестные грамотрицательные Gram negativos desconocidos Gram hasi wasiojulikana okända gramnegativa bakterier bilinmeyen Gram-negatifler невідомі грамнегативні نامعلوم گرام منفی Gram âm chưa xác định
8 unknown Gram-positives TRUE TRUE FALSE TRUE unknown Gram-positives موجبة الجرام غير معروفة অজানা গ্রাম-পজিটিভ 不明革兰氏阳性菌 neznámé grampozitivní ukendte Gram-positive onbekende Gram-positieven tuntemattomat grampositiiviset Gram positifs inconnus unbekannte Grampositiven άγνωστοι θετικοί κατά Gram अज्ञात ग्राम-पॉज़िटिव्स Gram positif tidak diketahui Gram positivi sconosciuti 未知のグラム陽性菌 알 수 없는 그람 양성균 ukjent Gram-positive Nieznane bakterie Gram-dodatnie Gram positivos desconhecidos Gram-pozitive necunoscute неизвестные грамположительные Gram positivos desconocidos Gram chanya wasiojulikana okända Gram-positiva bilinmeyen Gram-pozitifler невідомі грампозитивні نامعلوم گرام مثبت Gram dương chưa xác định
280 Antifungals/antimycotics FALSE TRUE TRUE FALSE Antifungals/antimycotics مضادات الفطريات/الفطريات المُمرِضة অ্যান্টিফাঙ্গালস/অ্যান্টিমাইকোটিকস 抗真菌药/抗真菌药 Antimykotika/antimykotika Antimykotika/antimykotika Antifungica/antimycotica Sienilääkkeet/antimykootit Antifongiques/antimycotiques Antimykotika/Antimykotika Αντιμυκητιασικά/αντιμυκητιασικά प्रतिफफूंद/प्रतिमाइकोटिक्स Antijamur/antimikotik Antifungini/antimicotici 抗真菌剤/抗真菌剤 항진균제/항진균성약물 Soppdrepende midler/antimykotika Środki przeciwgrzybicze/przeciwmikotyczne Antifúngicos/antimicóticos Antifungice/antimicrotice Противогрибковые препараты/антимикотики Antifúngicos/antimicóticos Dawa za kuua kuvu/antimaikoti Antimykotika/antimykotika Antifungaller/antimikotikler Протигрибкові засоби/антимікотики فنگس/اینٹی مائیکوٹک Thuốc chống nấm/kháng nấm
281 Antimycobacterials FALSE TRUE TRUE FALSE Antimycobacterials مضادات الفطريات الحمضية المقاومة অ্যান্টিমাইকোব্যাকটেরিয়ালস 抗霉菌素类 Antimykobakteriální látky Antimycobakterier Antimycobacteriele middelen Antimykobakteerit Antimycobactériens Antimykobakterielle Mittel Αντιμυκοβακτηριακά प्रतिमाइकोबैक्टीरियल्स Antimikobakteri Antimicobatterici 抗マイコバクテリア薬 항항산균제 Antimykobakterielle midler Środki przeciwgrzybicze Antimycobacterials Antimicobacteriene Антимикобактериальные препараты Antimicrobianos Dawa dhidi ya mykobakteria Antimykobakterier Antimikobakteriyeller Засоби, що діють на мікобактерії اینٹی مائیکوبیکٹیریل Thuốc chống trực khuẩn kháng axit
282 Beta-lactams/penicillins FALSE TRUE TRUE FALSE Beta-lactams/penicillins البيتا-لاكتامات/البنسلينات বেটা-ল্যাকটামস/পেনিসিলিনস β-内酰胺类/青霉素类 Beta-laktamy/peniciliny Beta-lactamer/penicilliner Beta-lactams/penicillines Beetalaktaamit/penisilliinit Bêta-lactamines/pénicillines Beta-Lactame/Penicilline Β-λακτάμες/πενικιλλίνες बीटा-लैक्टाम्स/पेनिसिलिन्स Beta-laktam/penisilin Beta-lattami/penicilline β-ラクタム系/ペニシリン系抗菌薬 베타-락탐/페니실린 Betalaktamer/penicilliner Beta-laktamy/penicyliny Beta-lactâmicas/penicilinas Beta-lactame/peniciline Бета-лактамы/пенициллины Beta-lactámicos/penicilinas Betalaktamu/penisilini Beta-laktamer/penicilliner Beta-laktamlar/penisilinler Бета-лактами/пеніциліни بیٹا لیکٹمز/پینسلنز Beta-lactam/penicillin
283 Betalactams Beta-lactams FALSE TRUE TRUE FALSE Betalactams البيتا-لاكتامات বেটা-ল্যাকটামস β-内酰胺类 Beta-laktamy Beta-lactamer Beta-lactams Beetalaktaamit Bêta-lactamines Beta-Lactame Β-λακτάμες बीटा-लैक्टाम्स Beta-laktam Beta-lattami β-ラクタム系抗菌薬 베타-락탐 Betalaktamer Beta-laktamy Beta-lactâmicas Beta-lactame Бета-лактамы Beta-lactámicos Betalaktamu Betalaktamer Beta-laktamlar Бета-лактами بیٹا لیکٹمز Beta-lactam
284 Beta-lactamase inhibitors FALSE TRUE TRUE FALSE Beta-lactamase inhibitors مثبطات بيتا-لاكتاماز বেটা-ল্যাকটামেজ ইনহিবিটরস β-内酰胺酶抑制剂 Inhibitory beta-laktamázy Beta-laktamasehæmmere Beta-lactamaseremmers Beetalaktamaasin estäjät Inhibiteurs de bêta-lactamase Beta-Laktamase-Inhibitoren Αναστολείς β-λακταμάσης बीटा-लैक्टामेज़ अवरोधक Inhibitor beta-laktamase Inibitori delle beta-lattamasi β-ラクタマーゼ阻害薬 베타-락타마제 억제제 Beta-laktamasehemmere Inhibitory beta-laktamaz Inibidores da beta-lactamase Inhibitori de beta-lactamază Ингибиторы бета-лактамаз Inhibidores de beta-lactamasa Vizuizi vya beta-laktamasi Beta-laktamashämmare Beta-laktamaz inhibitörleri Інгібітори бета-лактамаз بیٹا لیکٹامیز انہیبیٹرز Chất ức chế beta-lactamase
285 Carbapenems FALSE TRUE TRUE FALSE Carbapenems الكاربابينيمات কার্বাপেনেমস 碳青霉烯类 Karbapenemy Carbapenemer Carbapenems Karbapeneemit Carbapénèmes Carbapeneme Καρβαπενέμες कार्बापेनेम्स Karbapenem Carbapenemi カルバペネム系抗生物質 카르바페넴 Carbapenemer Karbapenemy Carbapenêmicos Carbapeneme Карбапенемы Carbapenémicos Karbapenemu Carbapenemer Karbapenemler Карбапенеми کارباپینیمز Carbapenem
286 Cephalosporins FALSE TRUE TRUE FALSE Cephalosporins السيفالوسبورينات সেফালোসপরিনস 头孢菌素类 Cefalosporiny Cefalosporiner Cefalosporines Kefalosporiinit Céphalosporines Cephalosporine Κεφαλοσπορίνες सेफालोस्पोरिन्स Sefalosporin Cefalosporine セファロスポリン 세팔로스포린 Cefalosporiner Cefalosporyny Cefalosporinas Cefalosporine Цефалоспорины Cefalosporinas Sefalosporini Kefalosporiner Sefalosporinler Цефалоспорини سیفالوسپورنز Cephalosporin
287 Cephalosporins (1st gen.) FALSE TRUE TRUE FALSE Cephalosporins (1st gen.) السيفالوسبورينات (الجيل الأول) সেফালোসপরিনস (১ম প্রজন্ম) 头孢菌素类(第一代) Cefalosporiny (1. gen.) Cefalosporiner (1. gen.) Cefalosporines (1e gen.) Kefalosporiinit (1. suk.) Céphalosporines (1ère génération) Cephalosporine (1. Gen.) Κεφαλοσπορίνες (1ου γένους) सेफालोस्पोरिन्स (प्रथम पीढ़ी) Sefalosporin (generasi 1) Cefalosporine (1° gen.) セファロスポリン系抗生物質(第1世代) 세팔로스포린 (1세대) Cefalosporiner (1. generasjon) Cefalosporyny (1. gen.) Cefalosporinas (1º género) Cefalosporine (prima generație) Цефалоспорины (1-го пок.) Cefalosporinas (1er gen.) Sefalosporini (kizazi cha 1) Kefalosporiner (första gen.) Sefalosporinler (1. kuşak) Цефалоспорини (1 пок.) سیفالوسپورنز (پہلی نسل) Cephalosporin (thế hệ 1)
303 Oxazolidinones FALSE TRUE TRUE FALSE Oxazolidinones الأوكسازوليدينونات অক্সাজোলিডিনোনস 恶唑烷酮类 Oxazolidinone Oxazolidinones Oxazolidinonen Oxazolidinonit Oxazolidinones Oxazolidinone Οξαζολιδινόνες ऑक्साज़ोलिडिनोन्स Oksazolidinon Oxazolidinonas オキサゾリジノン 옥사졸리디논 Oxazolidinones Oksazolidynony Oxazolidinonas Oxazolidinone Оксазолидиноны Oxazolidinonas Oxazolidinoni Oxazolidinones Oxazolidinonlar Оксазолідинони اوکسا زولڈی نونز Oxazolidinone
304 Penicillins FALSE TRUE TRUE FALSE Penicillins البنسلينات পেনিসিলিনস 青霉素类 Пенициллины Penicillins Penicillines Penisilliinit Pénicillines Penicillins Πενικιλίνες पेनिसिलिन्स Penisilin Penicilinas ペニシリン 페니실린 Penicillins Penicyliny Penicilinas Peniciline Пенициллины Penicilinas Penisilini Penicillins Penisilinler Пеніциліни پینسلن Penicillin
305 Phenicols FALSE TRUE TRUE FALSE Phenicols الفينيكولات ফেনিকলস 酚类抗生素 Phenikoly Fenicoler Fenicols Fenikolit Phénicols Phenicol Φαινικόλες फेनिकोल्स Fenikol Fenicoli フェニコール 페니콜 Fenicoler Fenikole Fenicóis Fenicoli Фениколы Fenicoles Fenikoli Fenicoler Fenikoller Фенікони فینیکولز Phenicols
306 Phosphonics FALSE TRUE TRUE FALSE Phosphonics الفوسفونيّات ফসফোনিকস 膦酸类 Phosphonáty Fosfonater Fosfonaten Fosfonaatit Phosphoniques Phosphonates Φωσφονικά फॉस्फ़ोनिक्स Fosfonik Fosfonici ホスホン酸系抗菌薬 포스포닉계 Fosfonater Fosfoniany Fosfônicos Fosfonați Фосфоники Fosfónicos Fosfoniki Fosfonater Fosfonikler Фосфоніки فاسفونکس Các hợp chất phosphonic
307 Polymyxins FALSE TRUE TRUE FALSE Polymyxins البوليميكسينات পলিমিক্সিনস 多粘菌素类 Polymyxiny Polymyxiner Polymyxines Polymysiinit Polymyxines Polymyxine Πολυμυξίνες पॉलीमिक्सिन्स Polimiksin Polimixine ポリミキシン 폴리믹신 Polymyxiner Polimyksyny Polimixinas Polimixine Полимиксины Polimixinas Polimiksini Polymyxiner Polimiksinler Поліміксини پولی مائکسینز Polymyxin
308 Quinolones FALSE TRUE TRUE FALSE Quinolones الكوينولونات কুইনোলোনস 喹诺酮类 Chinolony Kinoloner Quinolonen Kinolonit Quinolones Quinolone Κινολόνες क्विनोलोन्स Kuinalon Chinoloni キノロン 퀴놀론 Kinoloner Quinolony Quinolones Quinolone Хинолоны Quinolonas Kinoloni Kinoloner Kinolonlar Хінолони کوئنولونز Quinolone
309 Rifamycins FALSE TRUE TRUE FALSE Rifamycins الريفاميسينات রিফামাইসিনস 利福霉素类 Rifamycine Rifamycins Rifamycinen Rifamysiinit Rifamycines Rifamycine Ριφαμυκίνες रिफामाइसिन्स Rifamisin Rifamicinas リファマイシン 리팜이신 Rifamycins Rifamycyny Rifamycinas Rifamicine Рифамицины Rifamicinas Rifamasini Rifamycins Rifamisinler Рифаміцини ریفامائسنز Rifamycin

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@@ -27,7 +27,7 @@ ab_synonyms(x, ...)
ab_tradenames(x, ...)
ab_group(x, language = get_AMR_locale(), ...)
ab_group(x, language = get_AMR_locale(), all_groups = FALSE, ...)
ab_atc(x, only_first = FALSE, ...)
@@ -59,6 +59,8 @@ set_ab_names(data, ..., property = "name", language = get_AMR_locale(),
\item{...}{In case of \code{\link[=set_ab_names]{set_ab_names()}} and \code{data} is a \link{data.frame}: columns to select (supports tidy selection such as \code{column1:column4}), otherwise other arguments passed on to \code{\link[=as.ab]{as.ab()}}.}
\item{all_groups}{A \link{logical} to indicate whether all antimicrobial groups must be return as a vector for each input value. For example, an antibiotic in the "aminopenicillins" group, is also in the "penicillins" and "beta-lactams" groups. Setting \code{all_groups = TRUE} would return all three for such an antibiotic, while \code{all_groups = FALSE} (default) only returns the most distinctive group name.}
\item{only_first}{A \link{logical} to indicate whether only the first ATC code must be returned, with giving preference to J0-codes (i.e., the antimicrobial drug group).}
\item{administration}{Way of administration, either \code{"oral"} or \code{"iv"}.}
@@ -94,7 +96,7 @@ The function \code{\link[=set_ab_names]{set_ab_names()}} is a special column ren
World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
}
\section{Download Our Reference Data}{

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@@ -72,7 +72,7 @@ retrieve_wisca_parameters(wisca_model, ...)
\item{ab_transform}{A character to transform antimicrobial input - must be one of the column names of the \link{antimicrobials} data set (defaults to \code{"name"}): "ab", "cid", "name", "group", "atc", "atc_group1", "atc_group2", "abbreviations", "synonyms", "oral_ddd", "oral_units", "iv_ddd", "iv_units", or "loinc". Can also be \code{NULL} to not transform the input.}
\item{syndromic_group}{A column name of \code{x}, or values calculated to split rows of \code{x}, e.g. by using \code{\link[=ifelse]{ifelse()}} or \code{\link[dplyr:case_when]{case_when()}}. See \emph{Examples}.}
\item{syndromic_group}{A column name of \code{x}, or values calculated to split rows of \code{x}, e.g. by using \code{\link[=ifelse]{ifelse()}} or \code{\link[dplyr:case-and-replace-when]{case_when()}}. See \emph{Examples}.}
\item{add_total_n}{\emph{(deprecated in favour of \code{formatting_type})} A \link{logical} to indicate whether \code{n_tested} available numbers per pathogen should be added to the table (default is \code{TRUE}). This will add the lowest and highest number of available isolates per antimicrobial (e.g, if for \emph{E. coli} 200 isolates are available for ciprofloxacin and 150 for amoxicillin, the returned number will be "150-200"). This option is unavailable when \code{wisca = TRUE}; in that case, use \code{\link[=retrieve_wisca_parameters]{retrieve_wisca_parameters()}} to get the parameters used for WISCA.}

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@@ -26,9 +26,11 @@
\alias{oxazolidinones}
\alias{penicillins}
\alias{phenicols}
\alias{phosphonics}
\alias{polymyxins}
\alias{quinolones}
\alias{rifamycins}
\alias{spiropyrimidinetriones}
\alias{streptogramins}
\alias{sulfonamides}
\alias{tetracyclines}
@@ -98,6 +100,8 @@ penicillins(only_sir_columns = FALSE, return_all = TRUE, ...)
phenicols(only_sir_columns = FALSE, return_all = TRUE, ...)
phosphonics(only_sir_columns = FALSE, return_all = TRUE, ...)
polymyxins(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
@@ -106,6 +110,8 @@ quinolones(only_sir_columns = FALSE, only_treatable = TRUE,
rifamycins(only_sir_columns = FALSE, return_all = TRUE, ...)
spiropyrimidinetriones(only_sir_columns = FALSE, return_all = TRUE, ...)
streptogramins(only_sir_columns = FALSE, return_all = TRUE, ...)
sulfonamides(only_sir_columns = FALSE, return_all = TRUE, ...)
@@ -173,13 +179,13 @@ The \code{\link[=administrable_per_os]{administrable_per_os()}} and \code{\link[
The \code{\link[=amr_selector]{amr_selector()}} function can be used to internally filter the \link{antimicrobials} data set on any results, see \emph{Examples}. It allows for filtering on a (part of) a certain name, and/or a group name or even a minimum of DDDs for oral treatment. This function yields the highest flexibility, but is also the least user-friendly, since it requires a hard-coded filter to set.
The \code{\link[=not_intrinsic_resistant]{not_intrinsic_resistant()}} function can be used to only select antimicrobials that pose no intrinsic resistance for the microorganisms in the data set. For example, if a data set contains only microorganism codes or names of \emph{E. coli} and \emph{K. pneumoniae} and contains a column "vancomycin", this column will be removed (or rather, unselected) using this function. It currently applies \href{https://www.eucast.org/expert_rules_and_expected_phenotypes}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023) to determine intrinsic resistance, using the \code{\link[=eucast_rules]{eucast_rules()}} function internally. Because of this determination, this function is quite slow in terms of performance.
The \code{\link[=not_intrinsic_resistant]{not_intrinsic_resistant()}} function can be used to only select antimicrobials that pose no intrinsic resistance for the microorganisms in the data set. For example, if a data set contains only microorganism codes or names of \emph{E. coli} and \emph{K. pneumoniae} and contains a column "vancomycin", this column will be removed (or rather, unselected) using this function. It currently applies \href{https://www.eucast.org/bacteria/important-additional-information/expert-rules/}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023) to determine intrinsic resistance, using the \code{\link[=eucast_rules]{eucast_rules()}} function internally. Because of this determination, this function is quite slow in terms of performance.
}
\section{Full list of supported (antimicrobial) classes}{
\itemize{
\item \code{\link[=aminoglycosides]{aminoglycosides()}} can select: \cr amikacin (AMK), amikacin/fosfomycin (AKF), apramycin (APR), arbekacin (ARB), astromicin (AST), bekanamycin (BEK), dibekacin (DKB), framycetin (FRM), gentamicin (GEN), gentamicin-high (GEH), habekacin (HAB), hygromycin (HYG), isepamicin (ISE), kanamycin (KAN), kanamycin-high (KAH), kanamycin/cephalexin (KAC), micronomicin (MCR), neomycin (NEO), netilmicin (NET), pentisomicin (PIM), plazomicin (PLZ), propikacin (PKA), ribostamycin (RST), sisomicin (SIS), streptoduocin (STR), streptomycin (STR1), streptomycin-high (STH), tobramycin (TOB), and tobramycin-high (TOH)
\item \code{\link[=aminopenicillins]{aminopenicillins()}} can select: \cr amoxicillin (AMX) and ampicillin (AMP)
\item \code{\link[=aminopenicillins]{aminopenicillins()}} can select: \cr amoxicillin (AMX), amoxicillin/clavulanic acid (AMC), and ampicillin (AMP)
\item \code{\link[=antifungals]{antifungals()}} can select: \cr amorolfine (AMO), amphotericin B (AMB), amphotericin B-high (AMH), anidulafungin (ANI), butoconazole (BUT), caspofungin (CAS), ciclopirox (CIX), clotrimazole (CTR), econazole (ECO), fluconazole (FLU), flucytosine (FCT), fosfluconazole (FFL), griseofulvin (GRI), hachimycin (HCH), ibrexafungerp (IBX), isavuconazole (ISV), isoconazole (ISO), itraconazole (ITR), ketoconazole (KET), manogepix (MGX), micafungin (MIF), miconazole (MCZ), nystatin (NYS), oteseconazole (OTE), pimaricin (PMR), posaconazole (POS), rezafungin (RZF), ribociclib (RBC), sulconazole (SUC), terbinafine (TRB), terconazole (TRC), and voriconazole (VOR)
\item \code{\link[=antimycobacterials]{antimycobacterials()}} can select: \cr 4-aminosalicylic acid (AMA), calcium aminosalicylate (CLA), capreomycin (CAP), clofazimine (CLF), delamanid (DLM), enviomycin (ENV), ethambutol (ETH), ethambutol/isoniazid (ETI), ethionamide (ETI1), isoniazid (INH), isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST), morinamide (MRN), p-aminosalicylic acid (PAS), pretomanid (PMD), protionamide (PTH), pyrazinamide (PZA), rifabutin (RIB), rifampicin (RIF), rifampicin/ethambutol/isoniazid (REI), rifampicin/isoniazid (RFI), rifampicin/pyrazinamide/ethambutol/isoniazid (RPEI), rifampicin/pyrazinamide/isoniazid (RPI), rifamycin (RFM), rifapentine (RFP), sodium aminosalicylate (SDA), streptomycin/isoniazid (STI), terizidone (TRZ), thioacetazone (TAT), thioacetazone/isoniazid (THI1), tiocarlide (TCR), and viomycin (VIO)
\item \code{\link[=betalactams]{betalactams()}} can select: \cr amoxicillin (AMX), amoxicillin/clavulanic acid (AMC), amoxicillin/sulbactam (AXS), ampicillin (AMP), ampicillin/sulbactam (SAM), apalcillin (APL), aspoxicillin (APX), azidocillin (AZD), azlocillin (AZL), aztreonam (ATM), aztreonam/avibactam (AZA), aztreonam/nacubactam (ANC), bacampicillin (BAM), benzathine benzylpenicillin (BNB), benzathine phenoxymethylpenicillin (BNP), benzylpenicillin (PEN), benzylpenicillin screening test (PEN-S), biapenem (BIA), carbenicillin (CRB), carindacillin (CRN), carumonam (CAR), cefacetrile (CAC), cefaclor (CEC), cefadroxil (CFR), cefalexin (LEX), cefaloridine (RID), cefalotin (CEP), cefamandole (MAN), cefapirin (HAP), cefatrizine (CTZ), cefazedone (CZD), cefazolin (CZO), cefcapene (CCP), cefcapene pivoxil (CCX), cefdinir (CDR), cefditoren (DIT), cefditoren pivoxil (DIX), cefepime (FEP), cefepime/amikacin (CFA), cefepime/clavulanic acid (CPC), cefepime/enmetazobactam (FPE), cefepime/nacubactam (FNC), cefepime/taniborbactam (FTA), cefepime/tazobactam (FPT), cefepime/zidebactam (FPZ), cefetamet (CAT), cefetamet pivoxil (CPI), cefetecol (CCL), cefetrizole (CZL), cefiderocol (FDC), cefixime (CFM), cefmenoxime (CMX), cefmetazole (CMZ), cefodizime (DIZ), cefonicid (CID), cefoperazone (CFP), cefoperazone/sulbactam (CSL), ceforanide (CND), cefoselis (CSE), cefotaxime (CTX), cefotaxime screening test (CTX-S), cefotaxime/clavulanic acid (CTC), cefotaxime/sulbactam (CTS), cefotetan (CTT), cefotiam (CTF), cefotiam hexetil (CHE), cefovecin (FOV), cefoxitin (FOX), cefoxitin screening test (FOX-S), cefozopran (ZOP), cefpimizole (CFZ), cefpiramide (CPM), cefpirome (CPO), cefpodoxime (CPD), cefpodoxime proxetil (CPX), cefpodoxime/clavulanic acid (CDC), cefprozil (CPR), cefquinome (CEQ), cefroxadine (CRD), cefsulodin (CFS), cefsumide (CSU), ceftaroline (CPT), ceftaroline/avibactam (CPA), ceftazidime (CAZ), ceftazidime/avibactam (CZA), ceftazidime/clavulanic acid (CCV), cefteram (CEM), cefteram pivoxil (CPL), ceftezole (CTL), ceftibuten (CTB), ceftiofur (TIO), ceftizoxime (CZX), ceftizoxime alapivoxil (CZP), ceftobiprole (BPR), ceftobiprole medocaril (CFM1), ceftolozane/tazobactam (CZT), ceftriaxone (CRO), ceftriaxone/beta-lactamase inhibitor (CEB), cefuroxime (CXM), cefuroxime axetil (CXA), cephradine (CED), ciclacillin (CIC), clometocillin (CLM), cloxacillin (CLO), dicloxacillin (DIC), doripenem (DOR), epicillin (EPC), ertapenem (ETP), flucloxacillin (FLC), hetacillin (HET), imipenem (IPM), imipenem/EDTA (IPE), imipenem/relebactam (IMR), latamoxef (LTM), lenampicillin (LEN), loracarbef (LOR), mecillinam (MEC), meropenem (MEM), meropenem/nacubactam (MNC), meropenem/vaborbactam (MEV), metampicillin (MTM), meticillin (MET), mezlocillin (MEZ), mezlocillin/sulbactam (MSU), nafcillin (NAF), oxacillin (OXA), oxacillin screening test (OXA-S), panipenem (PAN), penamecillin (PNM), penicillin/novobiocin (PNO), penicillin/sulbactam (PSU), pheneticillin (PHE), phenoxymethylpenicillin (PHN), piperacillin (PIP), piperacillin/sulbactam (PIS), piperacillin/tazobactam (TZP), piridicillin (PRC), pivampicillin (PVM), pivmecillinam (PME), procaine benzylpenicillin (PRB), propicillin (PRP), razupenem (RZM), ritipenem (RIT), ritipenem acoxil (RIA), sarmoxicillin (SRX), sulbenicillin (SBC), sultamicillin (SLT6), talampicillin (TAL), taniborbactam (TAN), tebipenem (TBP), temocillin (TEM), ticarcillin (TIC), ticarcillin/clavulanic acid (TCC), and tigemonam (TMN)
@@ -194,21 +200,23 @@ The \code{\link[=not_intrinsic_resistant]{not_intrinsic_resistant()}} function c
\item \code{\link[=fluoroquinolones]{fluoroquinolones()}} can select: \cr besifloxacin (BES), ciprofloxacin (CIP), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levofloxacin/ornidazole (LEO), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nemonoxacin (NEM), nifuroquine (NIF), nitroxoline (NTR), norfloxacin (NOR), norfloxacin screening test (NOR-S), norfloxacin/metronidazole (NME), norfloxacin/tinidazole (NTI), ofloxacin (OFX), ofloxacin/ornidazole (OOR), orbifloxacin (ORB), pazufloxacin (PAZ), pefloxacin (PEF), pefloxacin screening test (PEF-S), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=glycopeptides]{glycopeptides()}} can select: \cr avoparcin (AVO), bleomycin (BLM), dalbavancin (DAL), norvancomycin (NVA), oritavancin (ORI), ramoplanin (RAM), teicoplanin (TEC), teicoplanin-macromethod (TCM), telavancin (TLV), vancomycin (VAN), and vancomycin-macromethod (VAM)
\item \code{\link[=isoxazolylpenicillins]{isoxazolylpenicillins()}} can select: \cr cloxacillin (CLO), dicloxacillin (DIC), flucloxacillin (FLC), meticillin (MET), oxacillin (OXA), and oxacillin screening test (OXA-S)
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr clindamycin (CLI), lincomycin (LIN), and pirlimycin (PRL)
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr clindamycin (CLI), clindamycin inducible screening test (CLI-S), lincomycin (LIN), and pirlimycin (PRL)
\item \code{\link[=lipoglycopeptides]{lipoglycopeptides()}} can select: \cr dalbavancin (DAL), oritavancin (ORI), and telavancin (TLV)
\item \code{\link[=macrolides]{macrolides()}} can select: \cr acetylmidecamycin (ACM), acetylspiramycin (ASP), azithromycin (AZM), clarithromycin (CLR), dirithromycin (DIR), erythromycin (ERY), flurithromycin (FLR1), gamithromycin (GAM), josamycin (JOS), kitasamycin (KIT), meleumycin (MEL), midecamycin (MID), miocamycin (MCM), nafithromycin (ZWK), oleandomycin (OLE), rokitamycin (ROK), roxithromycin (RXT), solithromycin (SOL), spiramycin (SPI), telithromycin (TLT), tildipirosin (TIP), tilmicosin (TIL), troleandomycin (TRL), tulathromycin (TUL), tylosin (TYL), and tylvalosin (TYL1)
\item \code{\link[=macrolides]{macrolides()}} can select: \cr acetylmidecamycin (ACM), acetylspiramycin (ASP), azithromycin (AZM), clarithromycin (CLR), clindamycin inducible screening test (CLI-S), dirithromycin (DIR), erythromycin (ERY), flurithromycin (FLR1), gamithromycin (GAM), josamycin (JOS), kitasamycin (KIT), meleumycin (MEL), midecamycin (MID), miocamycin (MCM), nafithromycin (ZWK), oleandomycin (OLE), pirlimycin (PRL), primycin (PRM), rokitamycin (ROK), roxithromycin (RXT), solithromycin (SOL), spiramycin (SPI), telithromycin (TLT), tildipirosin (TIP), tilmicosin (TIL), troleandomycin (TRL), tulathromycin (TUL), tylosin (TYL), and tylvalosin (TYL1)
\item \code{\link[=monobactams]{monobactams()}} can select: \cr aztreonam (ATM), aztreonam/avibactam (AZA), aztreonam/nacubactam (ANC), carumonam (CAR), and tigemonam (TMN)
\item \code{\link[=nitrofurans]{nitrofurans()}} can select: \cr furazidin (FUR), furazolidone (FRZ), nifurtoinol (NFR), nitrofurantoin (NIT), and nitrofurazone (NIZ)
\item \code{\link[=oxazolidinones]{oxazolidinones()}} can select: \cr cadazolid (CDZ), cycloserine (CYC), linezolid (LNZ), tedizolid (TZD), and thiacetazone (THA)
\item \code{\link[=penicillins]{penicillins()}} can select: \cr amoxicillin (AMX), amoxicillin/clavulanic acid (AMC), amoxicillin/sulbactam (AXS), ampicillin (AMP), ampicillin/sulbactam (SAM), apalcillin (APL), aspoxicillin (APX), azidocillin (AZD), azlocillin (AZL), bacampicillin (BAM), benzathine benzylpenicillin (BNB), benzathine phenoxymethylpenicillin (BNP), benzylpenicillin (PEN), benzylpenicillin screening test (PEN-S), carbenicillin (CRB), carindacillin (CRN), ciclacillin (CIC), clometocillin (CLM), cloxacillin (CLO), dicloxacillin (DIC), epicillin (EPC), flucloxacillin (FLC), hetacillin (HET), lenampicillin (LEN), mecillinam (MEC), metampicillin (MTM), meticillin (MET), mezlocillin (MEZ), mezlocillin/sulbactam (MSU), nafcillin (NAF), oxacillin (OXA), oxacillin screening test (OXA-S), penamecillin (PNM), penicillin/novobiocin (PNO), penicillin/sulbactam (PSU), pheneticillin (PHE), phenoxymethylpenicillin (PHN), piperacillin (PIP), piperacillin/sulbactam (PIS), piperacillin/tazobactam (TZP), piridicillin (PRC), pivampicillin (PVM), pivmecillinam (PME), procaine benzylpenicillin (PRB), propicillin (PRP), sarmoxicillin (SRX), sulbenicillin (SBC), sultamicillin (SLT6), talampicillin (TAL), temocillin (TEM), ticarcillin (TIC), and ticarcillin/clavulanic acid (TCC)
\item \code{\link[=phenicols]{phenicols()}} can select: \cr chloramphenicol (CHL), florfenicol (FLR), and thiamphenicol (THI)
\item \code{\link[=phosphonics]{phosphonics()}} can select: \cr amikacin/fosfomycin (AKF) and fosfomycin (FOS)
\item \code{\link[=polymyxins]{polymyxins()}} can select: \cr colistin (COL), polymyxin B (PLB), and polymyxin B/polysorbate 80 (POP)
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin (BES), cinoxacin (CIN), ciprofloxacin (CIP), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), flumequine (FLM), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levofloxacin/ornidazole (LEO), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nalidixic acid (NAL), nalidixic acid screening test (NAL-S), nemonoxacin (NEM), nifuroquine (NIF), nitroxoline (NTR), norfloxacin (NOR), norfloxacin screening test (NOR-S), norfloxacin/metronidazole (NME), norfloxacin/tinidazole (NTI), ofloxacin (OFX), ofloxacin/ornidazole (OOR), orbifloxacin (ORB), oxolinic acid (OXO), pazufloxacin (PAZ), pefloxacin (PEF), pefloxacin screening test (PEF-S), pipemidic acid (PPA), piromidic acid (PIR), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rosoxacin (ROS), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin (BES), cinoxacin (CIN), ciprofloxacin (CIP), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), flumequine (FLM), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levofloxacin/ornidazole (LEO), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nalidixic acid (NAL), nalidixic acid screening test (NAL-S), nemonoxacin (NEM), nifuroquine (NIF), nitroxoline (NTR), norfloxacin (NOR), norfloxacin screening test (NOR-S), norfloxacin/metronidazole (NME), norfloxacin/tinidazole (NTI), ofloxacin (OFX), ofloxacin/ornidazole (OOR), orbifloxacin (ORB), oxolinic acid (OXO), ozenoxacin (OZN), pazufloxacin (PAZ), pefloxacin (PEF), pefloxacin screening test (PEF-S), pipemidic acid (PPA), piromidic acid (PIR), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rosoxacin (ROS), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=rifamycins]{rifamycins()}} can select: \cr rifabutin (RIB), rifampicin (RIF), rifampicin/ethambutol/isoniazid (REI), rifampicin/isoniazid (RFI), rifampicin/pyrazinamide/ethambutol/isoniazid (RPEI), rifampicin/pyrazinamide/isoniazid (RPI), rifamycin (RFM), and rifapentine (RFP)
\item \code{\link[=spiropyrimidinetriones]{spiropyrimidinetriones()}} can select: \cr zoliflodacin (ZFD)
\item \code{\link[=streptogramins]{streptogramins()}} can select: \cr pristinamycin (PRI) and quinupristin/dalfopristin (QDA)
\item \code{\link[=sulfonamides]{sulfonamides()}} can select: \cr brodimoprim (BDP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT), sulfadimethoxine (SUD), sulfadimidine (SDM), sulfafurazole (SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO), sulfamerazine (SLF3), sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7), sulfamoxole (SLF8), sulfanilamide (SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12), sulfathiazole (SUT), and sulfathiourea (SLF13)
\item \code{\link[=tetracyclines]{tetracyclines()}} can select: \cr cetocycline (CTO), chlortetracycline (CTE), clomocycline (CLM1), demeclocycline (DEM), doxycycline (DOX), eravacycline (ERV), lymecycline (LYM), metacycline (MTC), minocycline (MNO), omadacycline (OMC), oxytetracycline (OXY), penimepicycline (PNM1), rolitetracycline (RLT), sarecycline (SRC), tetracycline (TCY), tetracycline screening test (TCY-S), and tigecycline (TGC)
\item \code{\link[=trimethoprims]{trimethoprims()}} can select: \cr brodimoprim (BDP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT), sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD), sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole (SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO), sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3), sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7), sulfametrole/trimethoprim (SLT4), sulfamoxole (SLF8), sulfamoxole/trimethoprim (SLT5), sulfanilamide (SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12), sulfathiazole (SUT), sulfathiourea (SLF13), trimethoprim (TMP), and trimethoprim/sulfamethoxazole (SXT)
\item \code{\link[=sulfonamides]{sulfonamides()}} can select: \cr isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST), ormetroprim/sulfamethoxazole (ORS), sulfachlorpyridazine (SUP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT), sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD), sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole (SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO), sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3), sulfamethazine (SUM), sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7), sulfametrole/trimethoprim (SLT4), sulfamoxole (SLF8), sulfamoxole/trimethoprim (SLT5), sulfanilamide (SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12), sulfasuccinamide (SNA), sulfathiazole (SUT), sulfathiourea (SLF13), sulfisoxazole (SOX), sulfonamide (SSS), and trimethoprim/sulfamethoxazole (SXT)
\item \code{\link[=tetracyclines]{tetracyclines()}} can select: \cr cetocycline (CTO), chlortetracycline (CTE), clomocycline (CLM1), demeclocycline (DEM), doxycycline (DOX), eravacycline (ERV), lymecycline (LYM), metacycline (MTC), minocycline (MNO), omadacycline (OMC), oxytetracycline (OXY), penimepicycline (PNM1), rolitetracycline (RLT), sarecycline (SRC), tetracycline (TCY), tetracycline screening test (TCY-S), tetracycline/oleandomycin (TOL), and tigecycline (TGC)
\item \code{\link[=trimethoprims]{trimethoprims()}} can select: \cr brodimoprim (BDP), iclaprim (ICL), isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST), ormetroprim/sulfamethoxazole (ORS), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT), sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD), sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole (SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO), sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3), sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7), sulfametrole/trimethoprim (SLT4), sulfamoxole (SLF8), sulfamoxole/trimethoprim (SLT5), sulfanilamide (SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12), sulfathiazole (SUT), sulfathiourea (SLF13), trimethoprim (TMP), and trimethoprim/sulfamethoxazole (SXT)
\item \code{\link[=ureidopenicillins]{ureidopenicillins()}} can select: \cr azlocillin (AZL), mezlocillin (MEZ), piperacillin (PIP), and piperacillin/tazobactam (TZP)
}
}

View File

@@ -12,7 +12,7 @@
\item \code{ab}\cr antimicrobial ID as used in this package (such as \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available. \emph{\strong{This is a unique identifier.}}
\item \code{cid}\cr Compound ID as found in PubChem. \emph{\strong{This is a unique identifier.}}
\item \code{name}\cr Official name as used by WHONET/EARS-Net or the WHO. \emph{\strong{This is a unique identifier.}}
\item \code{group}\cr A short and concise group name, based on WHONET and WHOCC definitions
\item \code{group}\cr One or more short and concise group names, based on WHONET and WHOCC definitions
\item \code{atc}\cr ATC codes (Anatomical Therapeutic Chemical) as defined by the WHOCC, like \code{J01CR02} (last updated May 4th, 2025):
\item \code{atc_group1}\cr Official pharmacological subgroup (3rd level ATC code) as defined by the WHOCC, like \code{"Macrolides, lincosamides and streptogramins"}
\item \code{atc_group2}\cr Official chemical subgroup (4th level ATC code) as defined by the WHOCC, like \code{"Macrolides"}

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@@ -52,7 +52,7 @@ You can add your own manual codes to be considered by \code{\link[=as.ab]{as.ab(
World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
}
\section{WHOCC}{

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@@ -44,7 +44,7 @@ Note: the \code{\link[=as.av]{as.av()}} and \code{\link[=av_property]{av_*}} fun
World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
}
\section{WHOCC}{

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@@ -12,13 +12,15 @@
\alias{droplevels.mic}
\title{Transform Input to Minimum Inhibitory Concentrations (MIC)}
\usage{
as.mic(x, na.rm = FALSE, keep_operators = "all")
as.mic(x, na.rm = FALSE, keep_operators = "all",
round_to_next_log2 = FALSE)
is.mic(x)
NA_mic_
rescale_mic(x, mic_range, keep_operators = "edges", as.mic = TRUE)
rescale_mic(x, mic_range, keep_operators = "edges", as.mic = TRUE,
round_to_next_log2 = FALSE)
mic_p50(x, na.rm = FALSE, ...)
@@ -33,6 +35,8 @@ mic_p90(x, na.rm = FALSE, ...)
\item{keep_operators}{A \link{character} specifying how to handle operators (such as \code{>} and \code{<=}) in the input. Accepts one of three values: \code{"all"} (or \code{TRUE}) to keep all operators, \code{"none"} (or \code{FALSE}) to remove all operators, or \code{"edges"} to keep operators only at both ends of the range.}
\item{round_to_next_log2}{A \link{logical} to round up all values to the next log2 level, that are not either 0.0001, 0.0002, 0.0005, 0.001, 0.002, 0.004, 0.008, 0.016, 0.032, 0.064, 0.125, 0.25, 0.5, 1, 2, 4, 8, 16, 32, 64, 128, 256, 512, 1024, 2048, or 4096. Values that are already in this list (with or without operators), are left unchanged (including any operators).}
\item{mic_range}{A manual range to rescale the MIC values, e.g., \code{mic_range = c(0.001, 32)}. Use \code{NA} to prevent rescaling on one side, e.g., \code{mic_range = c(NA, 32)}.}
\item{as.mic}{A \link{logical} to indicate whether the \code{mic} class should be kept - the default is \code{TRUE} for \code{\link[=rescale_mic]{rescale_mic()}} and \code{FALSE} for \code{\link[=droplevels]{droplevels()}}. When setting this to \code{FALSE} in \code{\link[=rescale_mic]{rescale_mic()}}, the output will have factor levels that acknowledge \code{mic_range}.}

View File

@@ -19,7 +19,7 @@ For interpretations of minimum inhibitory concentration (MIC) values and disk di
\item \strong{CLSI M39: Analysis and Presentation of Cumulative Antimicrobial Susceptibility Test Data}, 2011-2025, \emph{Clinical and Laboratory Standards Institute} (CLSI). \url{https://clsi.org/standards/products/microbiology/documents/m39/}.
\item \strong{CLSI M100: Performance Standard for Antimicrobial Susceptibility Testing}, 2011-2025, \emph{Clinical and Laboratory Standards Institute} (CLSI). \url{https://clsi.org/standards/products/microbiology/documents/m100/}.
\item \strong{CLSI VET01: Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals}, 2019-2025, \emph{Clinical and Laboratory Standards Institute} (CLSI). \url{https://clsi.org/standards/products/veterinary-medicine/documents/vet01/}.
\item \strong{EUCAST Breakpoint tables for interpretation of MICs and zone diameters}, 2011-2025, \emph{European Committee on Antimicrobial Susceptibility Testing} (EUCAST). \url{https://www.eucast.org/clinical_breakpoints}.
\item \strong{EUCAST Breakpoint tables for interpretation of MICs and zone diameters}, 2011-2025, \emph{European Committee on Antimicrobial Susceptibility Testing} (EUCAST). \url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/clinical-breakpoint-tables/}.
\item \strong{WHONET} as a source for machine-reading the clinical breakpoints (\href{https://amr-for-r.org/reference/clinical_breakpoints.html#imported-from-whonet}{read more here}), 1989-2025, \emph{WHO Collaborating Centre for Surveillance of Antimicrobial Resistance}. \url{https://whonet.org/}.
}
}
@@ -34,11 +34,13 @@ is_sir_eligible(x, threshold = 0.05)
\method{as.sir}{default}(x, S = "^(S|U|1)+$", I = "^(I|2)+$",
R = "^(R|3)+$", NI = "^(N|NI|V|4)+$", SDD = "^(SDD|D|H|5)+$",
WT = "^(WT|6)+$", NWT = "^(NWT|7)+$", NS = "^(NS|8)+$",
info = interactive(), ...)
\method{as.sir}{mic}(x, mo = NULL, ab = deparse(substitute(x)),
guideline = getOption("AMR_guideline", "EUCAST"), uti = NULL,
capped_mic_handling = getOption("AMR_capped_mic_handling", "standard"),
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint",
@@ -50,6 +52,7 @@ is_sir_eligible(x, threshold = 0.05)
\method{as.sir}{disk}(x, mo = NULL, ab = deparse(substitute(x)),
guideline = getOption("AMR_guideline", "EUCAST"), uti = NULL,
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint",
@@ -62,6 +65,7 @@ is_sir_eligible(x, threshold = 0.05)
\method{as.sir}{data.frame}(x, ..., col_mo = NULL,
guideline = getOption("AMR_guideline", "EUCAST"), uti = NULL,
capped_mic_handling = getOption("AMR_capped_mic_handling", "standard"),
as_wt_nwt = identical(breakpoint_type, "ECOFF"),
add_intrinsic_resistance = FALSE,
reference_data = AMR::clinical_breakpoints,
substitute_missing_r_breakpoint = getOption("AMR_substitute_missing_r_breakpoint",
@@ -82,7 +86,7 @@ Otherwise: arguments passed on to methods.}
\item{threshold}{Maximum fraction of invalid antimicrobial interpretations of \code{x}, see \emph{Examples}.}
\item{S, I, R, NI, SDD}{A case-independent \link[base:regex]{regular expression} to translate input to this result. This regular expression will be run \emph{after} all non-letters and whitespaces are removed from the input.}
\item{S, I, R, NI, SDD, WT, NWT, NS}{A case-independent \link[base:regex]{regular expression} to translate input to this result. This regular expression will be run \emph{after} all non-letters and whitespaces are removed from the input.}
\item{info}{A \link{logical} to print information about the process, defaults to \code{TRUE} only in \link[base:interactive]{interactive sessions}.}
@@ -122,7 +126,9 @@ Otherwise: arguments passed on to methods.}
The default \code{"conservative"} setting ensures cautious handling of uncertain values while preserving interpretability. This option can also be set with the package option \code{\link[=AMR-options]{AMR_capped_mic_handling}}.}
\item{add_intrinsic_resistance}{\emph{(only useful when using a EUCAST guideline)} a \link{logical} to indicate whether intrinsic antibiotic resistance must also be considered for applicable bug-drug combinations, meaning that e.g. ampicillin will always return "R" in \emph{Klebsiella} species. Determination is based on the \link{intrinsic_resistant} data set, that itself is based on \href{https://www.eucast.org/expert_rules_and_expected_phenotypes}{'EUCAST Expert Rules' and 'EUCAST Intrinsic Resistance and Unusual Phenotypes' v3.3} (2021).}
\item{as_wt_nwt}{A \link{logical} to return \code{"WT"}/\code{"NWT"} instead of \code{"S"}/\code{"R"}. Defaults to \code{TRUE} when using ECOFFs, i.e., when \code{breakpoint_type} is set to \code{"ECOFF"}.}
\item{add_intrinsic_resistance}{\emph{(only useful when using a EUCAST guideline)} a \link{logical} to indicate whether intrinsic antibiotic resistance must also be considered for applicable bug-drug combinations, meaning that e.g. ampicillin will always return "R" in \emph{Klebsiella} species. Determination is based on the \link{intrinsic_resistant} data set, that itself is based on \href{https://www.eucast.org/bacteria/important-additional-information/expert-rules/}{'EUCAST Expert Rules' and 'EUCAST Intrinsic Resistance and Unusual Phenotypes' v3.3} (2021).}
\item{reference_data}{A \link{data.frame} to be used for interpretation, which defaults to the \link{clinical_breakpoints} data set. Changing this argument allows for using own interpretation guidelines. This argument must contain a data set that is equal in structure to the \link{clinical_breakpoints} data set (same column names and column types). Please note that the \code{guideline} argument will be ignored when \code{reference_data} is manually set.}
@@ -259,7 +265,7 @@ The function \code{\link[=is_sir_eligible]{is_sir_eligible()}} returns \code{TRU
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}

View File

@@ -74,7 +74,7 @@ The function \code{\link[=av_url]{av_url()}} will return the direct URL to the o
World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: \url{https://atcddd.fhi.no/atc_ddd_index/}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://ec.europa.eu/health/documents/community-register/html/reg_hum_atc.htm}
European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: \url{https://health.ec.europa.eu/documents/community-register/html/reg_hum_atc.htm}
}
\section{Download Our Reference Data}{

View File

@@ -45,7 +45,7 @@ bug_drug_combinations(x, col_mo = NULL, FUN = mo_shortname,
decimal point.}
}
\value{
The function \code{\link[=bug_drug_combinations]{bug_drug_combinations()}} returns a \link{data.frame} with columns "mo", "ab", "S", "SDD", "I", "R", and "total".
The function \code{\link[=bug_drug_combinations]{bug_drug_combinations()}} returns a \link{data.frame} with columns "mo", "ab", "S", "SDD", "I", "R", "WT, "NWT", and "total".
}
\description{
Determine antimicrobial resistance (AMR) of all bug-drug combinations in your data set where at least 30 (default) isolates are available per species. Use \code{\link[=format]{format()}} on the result to prettify it to a publishable/printable format, see \emph{Examples}.

View File

@@ -67,7 +67,7 @@ The function \code{\link[=count_df]{count_df()}} takes any variable from \code{d
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}

View File

@@ -19,7 +19,7 @@ Define custom EUCAST rules for your organisation or specific analysis and use th
Some organisations have their own adoption of EUCAST rules. This function can be used to define custom EUCAST rules to be used in the \code{\link[=eucast_rules]{eucast_rules()}} function.
\subsection{Basics}{
If you are familiar with the \code{\link[dplyr:case_when]{case_when()}} function of the \code{dplyr} package, you will recognise the input method to set your own rules. Rules must be set using what \R considers to be the 'formula notation'. The rule itself is written \emph{before} the tilde (\code{~}) and the consequence of the rule is written \emph{after} the tilde:
If you are familiar with the \code{\link[dplyr:case-and-replace-when]{case_when()}} function of the \code{dplyr} package, you will recognise the input method to set your own rules. Rules must be set using what \R considers to be the 'formula notation'. The rule itself is written \emph{before} the tilde (\code{~}) and the consequence of the rule is written \emph{after} the tilde:
\if{html}{\out{<div class="sourceCode r">}}\preformatted{x <- custom_eucast_rules(TZP == "S" ~ aminopenicillins == "S",
TZP == "R" ~ aminopenicillins == "R")
@@ -98,12 +98,13 @@ x
#> amoxicillin (AMX), ampicillin (AMP), azlocillin (AZL), mezlocillin (MEZ), piperacillin (PIP), piperacillin/tazobactam (TZP)
}\if{html}{\out{</div>}}
These 35 antimicrobial groups are allowed in the rules (case-insensitive) and can be used in any combination:
These 38 antimicrobial groups are allowed in the rules (case-insensitive) and can be used in any combination:
\itemize{
\item aminoglycosides\cr(amikacin, amikacin/fosfomycin, apramycin, arbekacin, astromicin, bekanamycin, dibekacin, framycetin, gentamicin, gentamicin-high, habekacin, hygromycin, isepamicin, kanamycin, kanamycin-high, kanamycin/cephalexin, micronomicin, neomycin, netilmicin, pentisomicin, plazomicin, propikacin, ribostamycin, sisomicin, streptoduocin, streptomycin, streptomycin-high, tobramycin, and tobramycin-high)
\item aminopenicillins\cr(amoxicillin and ampicillin)
\item aminopenicillins\cr(amoxicillin, amoxicillin/clavulanic acid, and ampicillin)
\item antifungals\cr(amorolfine, amphotericin B, amphotericin B-high, anidulafungin, butoconazole, caspofungin, ciclopirox, clotrimazole, econazole, fluconazole, flucytosine, fosfluconazole, griseofulvin, hachimycin, ibrexafungerp, isavuconazole, isoconazole, itraconazole, ketoconazole, manogepix, micafungin, miconazole, nystatin, oteseconazole, pimaricin, posaconazole, rezafungin, ribociclib, sulconazole, terbinafine, terconazole, and voriconazole)
\item antimycobacterials\cr(4-aminosalicylic acid, calcium aminosalicylate, capreomycin, clofazimine, delamanid, enviomycin, ethambutol, ethambutol/isoniazid, ethionamide, isoniazid, isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, morinamide, p-aminosalicylic acid, pretomanid, protionamide, pyrazinamide, rifabutin, rifampicin, rifampicin/ethambutol/isoniazid, rifampicin/isoniazid, rifampicin/pyrazinamide/ethambutol/isoniazid, rifampicin/pyrazinamide/isoniazid, rifamycin, rifapentine, sodium aminosalicylate, streptomycin/isoniazid, terizidone, thioacetazone, thioacetazone/isoniazid, tiocarlide, and viomycin)
\item betalactamase_inhibitors\cr(amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin/sulbactam, avibactam, aztreonam/avibactam, aztreonam/nacubactam, cefepime/enmetazobactam, cefepime/nacubactam, cefepime/taniborbactam, cefepime/tazobactam, cefepime/zidebactam, cefoperazone/sulbactam, cefotaxime/sulbactam, ceftaroline/avibactam, ceftazidime/avibactam, ceftolozane/tazobactam, imipenem/relebactam, meropenem/nacubactam, meropenem/vaborbactam, mezlocillin/sulbactam, nacubactam, penicillin/sulbactam, piperacillin/sulbactam, piperacillin/tazobactam, sulbactam, sultamicillin, taniborbactam, tazobactam, ticarcillin/clavulanic acid, and zidebactam)
\item betalactams\cr(amoxicillin, amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin, ampicillin/sulbactam, apalcillin, aspoxicillin, azidocillin, azlocillin, aztreonam, aztreonam/avibactam, aztreonam/nacubactam, bacampicillin, benzathine benzylpenicillin, benzathine phenoxymethylpenicillin, benzylpenicillin, benzylpenicillin screening test, biapenem, carbenicillin, carindacillin, carumonam, cefacetrile, cefaclor, cefadroxil, cefalexin, cefaloridine, cefalotin, cefamandole, cefapirin, cefatrizine, cefazedone, cefazolin, cefcapene, cefcapene pivoxil, cefdinir, cefditoren, cefditoren pivoxil, cefepime, cefepime/amikacin, cefepime/clavulanic acid, cefepime/enmetazobactam, cefepime/nacubactam, cefepime/taniborbactam, cefepime/tazobactam, cefepime/zidebactam, cefetamet, cefetamet pivoxil, cefetecol, cefetrizole, cefiderocol, cefixime, cefmenoxime, cefmetazole, cefodizime, cefonicid, cefoperazone, cefoperazone/sulbactam, ceforanide, cefoselis, cefotaxime, cefotaxime screening test, cefotaxime/clavulanic acid, cefotaxime/sulbactam, cefotetan, cefotiam, cefotiam hexetil, cefovecin, cefoxitin, cefoxitin screening test, cefozopran, cefpimizole, cefpiramide, cefpirome, cefpodoxime, cefpodoxime proxetil, cefpodoxime/clavulanic acid, cefprozil, cefquinome, cefroxadine, cefsulodin, cefsumide, ceftaroline, ceftaroline/avibactam, ceftazidime, ceftazidime/avibactam, ceftazidime/clavulanic acid, cefteram, cefteram pivoxil, ceftezole, ceftibuten, ceftiofur, ceftizoxime, ceftizoxime alapivoxil, ceftobiprole, ceftobiprole medocaril, ceftolozane/tazobactam, ceftriaxone, ceftriaxone/beta-lactamase inhibitor, cefuroxime, cefuroxime axetil, cephradine, ciclacillin, clometocillin, cloxacillin, dicloxacillin, doripenem, epicillin, ertapenem, flucloxacillin, hetacillin, imipenem, imipenem/EDTA, imipenem/relebactam, latamoxef, lenampicillin, loracarbef, mecillinam, meropenem, meropenem/nacubactam, meropenem/vaborbactam, metampicillin, meticillin, mezlocillin, mezlocillin/sulbactam, nafcillin, oxacillin, oxacillin screening test, panipenem, penamecillin, penicillin/novobiocin, penicillin/sulbactam, pheneticillin, phenoxymethylpenicillin, piperacillin, piperacillin/sulbactam, piperacillin/tazobactam, piridicillin, pivampicillin, pivmecillinam, procaine benzylpenicillin, propicillin, razupenem, ritipenem, ritipenem acoxil, sarmoxicillin, sulbenicillin, sultamicillin, talampicillin, taniborbactam, tebipenem, temocillin, ticarcillin, ticarcillin/clavulanic acid, and tigemonam)
\item betalactams_with_inhibitor\cr(amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin/sulbactam, aztreonam/avibactam, aztreonam/nacubactam, cefepime/amikacin, cefepime/clavulanic acid, cefepime/enmetazobactam, cefepime/nacubactam, cefepime/taniborbactam, cefepime/tazobactam, cefepime/zidebactam, cefoperazone/sulbactam, cefotaxime/clavulanic acid, cefotaxime/sulbactam, cefpodoxime/clavulanic acid, ceftaroline/avibactam, ceftazidime/avibactam, ceftazidime/clavulanic acid, ceftolozane/tazobactam, ceftriaxone/beta-lactamase inhibitor, imipenem/relebactam, meropenem/nacubactam, meropenem/vaborbactam, mezlocillin/sulbactam, penicillin/novobiocin, penicillin/sulbactam, piperacillin/sulbactam, piperacillin/tazobactam, and ticarcillin/clavulanic acid)
\item carbapenems\cr(biapenem, doripenem, ertapenem, imipenem, imipenem/EDTA, imipenem/relebactam, meropenem, meropenem/nacubactam, meropenem/vaborbactam, panipenem, razupenem, ritipenem, ritipenem acoxil, taniborbactam, and tebipenem)
@@ -118,22 +119,24 @@ These 35 antimicrobial groups are allowed in the rules (case-insensitive) and ca
\item glycopeptides\cr(avoparcin, bleomycin, dalbavancin, norvancomycin, oritavancin, ramoplanin, teicoplanin, teicoplanin-macromethod, telavancin, vancomycin, and vancomycin-macromethod)
\item glycopeptides_except_lipo\cr(avoparcin, bleomycin, norvancomycin, ramoplanin, teicoplanin, teicoplanin-macromethod, vancomycin, and vancomycin-macromethod)
\item isoxazolylpenicillins\cr(cloxacillin, dicloxacillin, flucloxacillin, meticillin, oxacillin, and oxacillin screening test)
\item lincosamides\cr(clindamycin, lincomycin, and pirlimycin)
\item lincosamides\cr(clindamycin, clindamycin inducible screening test, lincomycin, and pirlimycin)
\item lipoglycopeptides\cr(dalbavancin, oritavancin, and telavancin)
\item macrolides\cr(acetylmidecamycin, acetylspiramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, flurithromycin, gamithromycin, josamycin, kitasamycin, meleumycin, midecamycin, miocamycin, nafithromycin, oleandomycin, rokitamycin, roxithromycin, solithromycin, spiramycin, telithromycin, tildipirosin, tilmicosin, troleandomycin, tulathromycin, tylosin, and tylvalosin)
\item macrolides\cr(acetylmidecamycin, acetylspiramycin, azithromycin, clarithromycin, clindamycin inducible screening test, dirithromycin, erythromycin, flurithromycin, gamithromycin, josamycin, kitasamycin, meleumycin, midecamycin, miocamycin, nafithromycin, oleandomycin, pirlimycin, primycin, rokitamycin, roxithromycin, solithromycin, spiramycin, telithromycin, tildipirosin, tilmicosin, troleandomycin, tulathromycin, tylosin, and tylvalosin)
\item monobactams\cr(aztreonam, aztreonam/avibactam, aztreonam/nacubactam, carumonam, and tigemonam)
\item nitrofurans\cr(furazidin, furazolidone, nifurtoinol, nitrofurantoin, and nitrofurazone)
\item oxazolidinones\cr(cadazolid, cycloserine, linezolid, tedizolid, and thiacetazone)
\item penicillins\cr(amoxicillin, amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin, ampicillin/sulbactam, apalcillin, aspoxicillin, azidocillin, azlocillin, bacampicillin, benzathine benzylpenicillin, benzathine phenoxymethylpenicillin, benzylpenicillin, benzylpenicillin screening test, carbenicillin, carindacillin, ciclacillin, clometocillin, cloxacillin, dicloxacillin, epicillin, flucloxacillin, hetacillin, lenampicillin, mecillinam, metampicillin, meticillin, mezlocillin, mezlocillin/sulbactam, nafcillin, oxacillin, oxacillin screening test, penamecillin, penicillin/novobiocin, penicillin/sulbactam, pheneticillin, phenoxymethylpenicillin, piperacillin, piperacillin/sulbactam, piperacillin/tazobactam, piridicillin, pivampicillin, pivmecillinam, procaine benzylpenicillin, propicillin, sarmoxicillin, sulbenicillin, sultamicillin, talampicillin, temocillin, ticarcillin, and ticarcillin/clavulanic acid)
\item phenicols\cr(chloramphenicol, florfenicol, and thiamphenicol)
\item phosphonics\cr(amikacin/fosfomycin and fosfomycin)
\item polymyxins\cr(colistin, polymyxin B, and polymyxin B/polysorbate 80)
\item quinolones\cr(besifloxacin, cinoxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levofloxacin/ornidazole, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nalidixic acid screening test, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, norfloxacin screening test, norfloxacin/metronidazole, norfloxacin/tinidazole, ofloxacin, ofloxacin/ornidazole, orbifloxacin, oxolinic acid, pazufloxacin, pefloxacin, pefloxacin screening test, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin)
\item quinolones\cr(besifloxacin, cinoxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levofloxacin/ornidazole, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nalidixic acid screening test, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, norfloxacin screening test, norfloxacin/metronidazole, norfloxacin/tinidazole, ofloxacin, ofloxacin/ornidazole, orbifloxacin, oxolinic acid, ozenoxacin, pazufloxacin, pefloxacin, pefloxacin screening test, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin)
\item rifamycins\cr(rifabutin, rifampicin, rifampicin/ethambutol/isoniazid, rifampicin/isoniazid, rifampicin/pyrazinamide/ethambutol/isoniazid, rifampicin/pyrazinamide/isoniazid, rifamycin, and rifapentine)
\item spiropyrimidinetriones\cr(zoliflodacin)
\item streptogramins\cr(pristinamycin and quinupristin/dalfopristin)
\item sulfonamides\cr(brodimoprim, sulfadiazine, sulfadiazine/tetroxoprim, sulfadimethoxine, sulfadimidine, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfamoxole, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, and sulfathiourea)
\item tetracyclines\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, tetracycline screening test, and tigecycline)
\item tetracyclines_except_tgc\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, and tetracycline screening test)
\item trimethoprims\cr(brodimoprim, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, sulfathiourea, trimethoprim, and trimethoprim/sulfamethoxazole)
\item sulfonamides\cr(isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, ormetroprim/sulfamethoxazole, sulfachlorpyridazine, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethazine, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfasuccinamide, sulfathiazole, sulfathiourea, sulfisoxazole, sulfonamide, and trimethoprim/sulfamethoxazole)
\item tetracyclines\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, tetracycline screening test, tetracycline/oleandomycin, and tigecycline)
\item tetracyclines_except_tgc\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, tetracycline screening test, and tetracycline/oleandomycin)
\item trimethoprims\cr(brodimoprim, iclaprim, isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, ormetroprim/sulfamethoxazole, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, sulfathiourea, trimethoprim, and trimethoprim/sulfamethoxazole)
\item ureidopenicillins\cr(azlocillin, mezlocillin, piperacillin, and piperacillin/tazobactam)
}
}

View File

@@ -26,7 +26,7 @@ Define custom a MDRO guideline for your organisation or specific analysis and us
Using a custom MDRO guideline is of importance if you have custom rules to determine MDROs in your hospital, e.g., rules that are dependent on ward, state of contact isolation or other variables in your data.
\subsection{Basics}{
If you are familiar with the \code{\link[dplyr:case_when]{case_when()}} function of the \code{dplyr} package, you will recognise the input method to set your own rules. Rules must be set using what \R considers to be the 'formula notation'. The rule itself is written \emph{before} the tilde (\code{~}) and the consequence of the rule is written \emph{after} the tilde:
If you are familiar with the \code{\link[dplyr:case-and-replace-when]{case_when()}} function of the \code{dplyr} package, you will recognise the input method to set your own rules. Rules must be set using what \R considers to be the 'formula notation'. The rule itself is written \emph{before} the tilde (\code{~}) and the consequence of the rule is written \emph{after} the tilde:
\if{html}{\out{<div class="sourceCode r">}}\preformatted{custom <- custom_mdro_guideline(CIP == "R" & age > 60 ~ "Elderly Type A",
ERY == "R" & age > 60 ~ "Elderly Type B")
@@ -94,10 +94,10 @@ You can define antimicrobial groups instead of single antimicrobials for the rul
)
}\if{html}{\out{</div>}}
All 35 antimicrobial selectors are supported for use in the rules:
All 38 antimicrobial selectors are supported for use in the rules:
\itemize{
\item \code{\link[=aminoglycosides]{aminoglycosides()}} can select: \cr amikacin, amikacin/fosfomycin, apramycin, arbekacin, astromicin, bekanamycin, dibekacin, framycetin, gentamicin, gentamicin-high, habekacin, hygromycin, isepamicin, kanamycin, kanamycin-high, kanamycin/cephalexin, micronomicin, neomycin, netilmicin, pentisomicin, plazomicin, propikacin, ribostamycin, sisomicin, streptoduocin, streptomycin, streptomycin-high, tobramycin, and tobramycin-high
\item \code{\link[=aminopenicillins]{aminopenicillins()}} can select: \cr amoxicillin and ampicillin
\item \code{\link[=aminopenicillins]{aminopenicillins()}} can select: \cr amoxicillin, amoxicillin/clavulanic acid, and ampicillin
\item \code{\link[=antifungals]{antifungals()}} can select: \cr amorolfine, amphotericin B, amphotericin B-high, anidulafungin, butoconazole, caspofungin, ciclopirox, clotrimazole, econazole, fluconazole, flucytosine, fosfluconazole, griseofulvin, hachimycin, ibrexafungerp, isavuconazole, isoconazole, itraconazole, ketoconazole, manogepix, micafungin, miconazole, nystatin, oteseconazole, pimaricin, posaconazole, rezafungin, ribociclib, sulconazole, terbinafine, terconazole, and voriconazole
\item \code{\link[=antimycobacterials]{antimycobacterials()}} can select: \cr 4-aminosalicylic acid, calcium aminosalicylate, capreomycin, clofazimine, delamanid, enviomycin, ethambutol, ethambutol/isoniazid, ethionamide, isoniazid, isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, morinamide, p-aminosalicylic acid, pretomanid, protionamide, pyrazinamide, rifabutin, rifampicin, rifampicin/ethambutol/isoniazid, rifampicin/isoniazid, rifampicin/pyrazinamide/ethambutol/isoniazid, rifampicin/pyrazinamide/isoniazid, rifamycin, rifapentine, sodium aminosalicylate, streptomycin/isoniazid, terizidone, thioacetazone, thioacetazone/isoniazid, tiocarlide, and viomycin
\item \code{\link[=betalactams]{betalactams()}} can select: \cr amoxicillin, amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin, ampicillin/sulbactam, apalcillin, aspoxicillin, azidocillin, azlocillin, aztreonam, aztreonam/avibactam, aztreonam/nacubactam, bacampicillin, benzathine benzylpenicillin, benzathine phenoxymethylpenicillin, benzylpenicillin, benzylpenicillin screening test, biapenem, carbenicillin, carindacillin, carumonam, cefacetrile, cefaclor, cefadroxil, cefalexin, cefaloridine, cefalotin, cefamandole, cefapirin, cefatrizine, cefazedone, cefazolin, cefcapene, cefcapene pivoxil, cefdinir, cefditoren, cefditoren pivoxil, cefepime, cefepime/amikacin, cefepime/clavulanic acid, cefepime/enmetazobactam, cefepime/nacubactam, cefepime/taniborbactam, cefepime/tazobactam, cefepime/zidebactam, cefetamet, cefetamet pivoxil, cefetecol, cefetrizole, cefiderocol, cefixime, cefmenoxime, cefmetazole, cefodizime, cefonicid, cefoperazone, cefoperazone/sulbactam, ceforanide, cefoselis, cefotaxime, cefotaxime screening test, cefotaxime/clavulanic acid, cefotaxime/sulbactam, cefotetan, cefotiam, cefotiam hexetil, cefovecin, cefoxitin, cefoxitin screening test, cefozopran, cefpimizole, cefpiramide, cefpirome, cefpodoxime, cefpodoxime proxetil, cefpodoxime/clavulanic acid, cefprozil, cefquinome, cefroxadine, cefsulodin, cefsumide, ceftaroline, ceftaroline/avibactam, ceftazidime, ceftazidime/avibactam, ceftazidime/clavulanic acid, cefteram, cefteram pivoxil, ceftezole, ceftibuten, ceftiofur, ceftizoxime, ceftizoxime alapivoxil, ceftobiprole, ceftobiprole medocaril, ceftolozane/tazobactam, ceftriaxone, ceftriaxone/beta-lactamase inhibitor, cefuroxime, cefuroxime axetil, cephradine, ciclacillin, clometocillin, cloxacillin, dicloxacillin, doripenem, epicillin, ertapenem, flucloxacillin, hetacillin, imipenem, imipenem/EDTA, imipenem/relebactam, latamoxef, lenampicillin, loracarbef, mecillinam, meropenem, meropenem/nacubactam, meropenem/vaborbactam, metampicillin, meticillin, mezlocillin, mezlocillin/sulbactam, nafcillin, oxacillin, oxacillin screening test, panipenem, penamecillin, penicillin/novobiocin, penicillin/sulbactam, pheneticillin, phenoxymethylpenicillin, piperacillin, piperacillin/sulbactam, piperacillin/tazobactam, piridicillin, pivampicillin, pivmecillinam, procaine benzylpenicillin, propicillin, razupenem, ritipenem, ritipenem acoxil, sarmoxicillin, sulbenicillin, sultamicillin, talampicillin, taniborbactam, tebipenem, temocillin, ticarcillin, ticarcillin/clavulanic acid, and tigemonam
@@ -112,21 +112,23 @@ All 35 antimicrobial selectors are supported for use in the rules:
\item \code{\link[=fluoroquinolones]{fluoroquinolones()}} can select: \cr besifloxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levofloxacin/ornidazole, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, norfloxacin screening test, norfloxacin/metronidazole, norfloxacin/tinidazole, ofloxacin, ofloxacin/ornidazole, orbifloxacin, pazufloxacin, pefloxacin, pefloxacin screening test, pradofloxacin, premafloxacin, prulifloxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin
\item \code{\link[=glycopeptides]{glycopeptides()}} can select: \cr avoparcin, bleomycin, dalbavancin, norvancomycin, oritavancin, ramoplanin, teicoplanin, teicoplanin-macromethod, telavancin, vancomycin, and vancomycin-macromethod
\item \code{\link[=isoxazolylpenicillins]{isoxazolylpenicillins()}} can select: \cr cloxacillin, dicloxacillin, flucloxacillin, meticillin, oxacillin, and oxacillin screening test
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr clindamycin, lincomycin, and pirlimycin
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr clindamycin, clindamycin inducible screening test, lincomycin, and pirlimycin
\item \code{\link[=lipoglycopeptides]{lipoglycopeptides()}} can select: \cr dalbavancin, oritavancin, and telavancin
\item \code{\link[=macrolides]{macrolides()}} can select: \cr acetylmidecamycin, acetylspiramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, flurithromycin, gamithromycin, josamycin, kitasamycin, meleumycin, midecamycin, miocamycin, nafithromycin, oleandomycin, rokitamycin, roxithromycin, solithromycin, spiramycin, telithromycin, tildipirosin, tilmicosin, troleandomycin, tulathromycin, tylosin, and tylvalosin
\item \code{\link[=macrolides]{macrolides()}} can select: \cr acetylmidecamycin, acetylspiramycin, azithromycin, clarithromycin, clindamycin inducible screening test, dirithromycin, erythromycin, flurithromycin, gamithromycin, josamycin, kitasamycin, meleumycin, midecamycin, miocamycin, nafithromycin, oleandomycin, pirlimycin, primycin, rokitamycin, roxithromycin, solithromycin, spiramycin, telithromycin, tildipirosin, tilmicosin, troleandomycin, tulathromycin, tylosin, and tylvalosin
\item \code{\link[=monobactams]{monobactams()}} can select: \cr aztreonam, aztreonam/avibactam, aztreonam/nacubactam, carumonam, and tigemonam
\item \code{\link[=nitrofurans]{nitrofurans()}} can select: \cr furazidin, furazolidone, nifurtoinol, nitrofurantoin, and nitrofurazone
\item \code{\link[=oxazolidinones]{oxazolidinones()}} can select: \cr cadazolid, cycloserine, linezolid, tedizolid, and thiacetazone
\item \code{\link[=penicillins]{penicillins()}} can select: \cr amoxicillin, amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin, ampicillin/sulbactam, apalcillin, aspoxicillin, azidocillin, azlocillin, bacampicillin, benzathine benzylpenicillin, benzathine phenoxymethylpenicillin, benzylpenicillin, benzylpenicillin screening test, carbenicillin, carindacillin, ciclacillin, clometocillin, cloxacillin, dicloxacillin, epicillin, flucloxacillin, hetacillin, lenampicillin, mecillinam, metampicillin, meticillin, mezlocillin, mezlocillin/sulbactam, nafcillin, oxacillin, oxacillin screening test, penamecillin, penicillin/novobiocin, penicillin/sulbactam, pheneticillin, phenoxymethylpenicillin, piperacillin, piperacillin/sulbactam, piperacillin/tazobactam, piridicillin, pivampicillin, pivmecillinam, procaine benzylpenicillin, propicillin, sarmoxicillin, sulbenicillin, sultamicillin, talampicillin, temocillin, ticarcillin, and ticarcillin/clavulanic acid
\item \code{\link[=phenicols]{phenicols()}} can select: \cr chloramphenicol, florfenicol, and thiamphenicol
\item \code{\link[=phosphonics]{phosphonics()}} can select: \cr amikacin/fosfomycin and fosfomycin
\item \code{\link[=polymyxins]{polymyxins()}} can select: \cr colistin, polymyxin B, and polymyxin B/polysorbate 80
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin, cinoxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levofloxacin/ornidazole, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nalidixic acid screening test, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, norfloxacin screening test, norfloxacin/metronidazole, norfloxacin/tinidazole, ofloxacin, ofloxacin/ornidazole, orbifloxacin, oxolinic acid, pazufloxacin, pefloxacin, pefloxacin screening test, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin, cinoxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levofloxacin/ornidazole, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nalidixic acid screening test, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, norfloxacin screening test, norfloxacin/metronidazole, norfloxacin/tinidazole, ofloxacin, ofloxacin/ornidazole, orbifloxacin, oxolinic acid, ozenoxacin, pazufloxacin, pefloxacin, pefloxacin screening test, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin
\item \code{\link[=rifamycins]{rifamycins()}} can select: \cr rifabutin, rifampicin, rifampicin/ethambutol/isoniazid, rifampicin/isoniazid, rifampicin/pyrazinamide/ethambutol/isoniazid, rifampicin/pyrazinamide/isoniazid, rifamycin, and rifapentine
\item \code{\link[=spiropyrimidinetriones]{spiropyrimidinetriones()}} can select: \cr zoliflodacin
\item \code{\link[=streptogramins]{streptogramins()}} can select: \cr pristinamycin and quinupristin/dalfopristin
\item \code{\link[=sulfonamides]{sulfonamides()}} can select: \cr brodimoprim, sulfadiazine, sulfadiazine/tetroxoprim, sulfadimethoxine, sulfadimidine, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfamoxole, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, and sulfathiourea
\item \code{\link[=tetracyclines]{tetracyclines()}} can select: \cr cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, tetracycline screening test, and tigecycline
\item \code{\link[=trimethoprims]{trimethoprims()}} can select: \cr brodimoprim, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, sulfathiourea, trimethoprim, and trimethoprim/sulfamethoxazole
\item \code{\link[=sulfonamides]{sulfonamides()}} can select: \cr isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, ormetroprim/sulfamethoxazole, sulfachlorpyridazine, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethazine, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfasuccinamide, sulfathiazole, sulfathiourea, sulfisoxazole, sulfonamide, and trimethoprim/sulfamethoxazole
\item \code{\link[=tetracyclines]{tetracyclines()}} can select: \cr cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, tetracycline screening test, tetracycline/oleandomycin, and tigecycline
\item \code{\link[=trimethoprims]{trimethoprims()}} can select: \cr brodimoprim, iclaprim, isoniazid/sulfamethoxazole/trimethoprim/pyridoxine, ormetroprim/sulfamethoxazole, sulfadiazine, sulfadiazine/tetroxoprim, sulfadiazine/trimethoprim, sulfadimethoxine, sulfadimidine, sulfadimidine/trimethoprim, sulfafurazole, sulfaisodimidine, sulfalene, sulfamazone, sulfamerazine, sulfamerazine/trimethoprim, sulfamethizole, sulfamethoxazole, sulfamethoxypyridazine, sulfametomidine, sulfametoxydiazine, sulfametrole/trimethoprim, sulfamoxole, sulfamoxole/trimethoprim, sulfanilamide, sulfaperin, sulfaphenazole, sulfapyridine, sulfathiazole, sulfathiourea, trimethoprim, and trimethoprim/sulfamethoxazole
\item \code{\link[=ureidopenicillins]{ureidopenicillins()}} can select: \cr azlocillin, mezlocillin, piperacillin, and piperacillin/tazobactam
}
}

View File

@@ -12,7 +12,7 @@ A \link[tibble:tibble]{tibble} with 759 observations and 9 variables:
\item \code{type}\cr Type of the dosage, either "high_dosage", "standard_dosage", or "uncomplicated_uti"
\item \code{dose}\cr Dose, such as "2 g" or "25 mg/kg"
\item \code{dose_times}\cr Number of times a dose must be administered
\item \code{administration}\cr Route of administration, either "", "im", "iv", or "oral"
\item \code{administration}\cr Route of administration, either "", "im", "iv", "oral", or NA
\item \code{notes}\cr Additional dosage notes
\item \code{original_txt}\cr Original text in the PDF file of EUCAST
\item \code{eucast_version}\cr Version number of the EUCAST Clinical Breakpoints guideline to which these dosages apply, either 15, 14, 13.1, 12, or 11

View File

@@ -9,7 +9,7 @@ A \link[tibble:tibble]{tibble} with 500 observations and 19 variables:
\itemize{
\item \code{esbl}\cr Logical indicator if the isolate is ESBL-producing
\item \code{genus}\cr Genus of the microorganism
\item \code{AMC:COL}\cr MIC values for 17 antimicrobial agents, transformed to class \code{\link{mic}} (see \code{\link[=as.mic]{as.mic()}})
\item \code{AMC:COL}\cr MIC values for 17 antimicrobial drugs, transformed to class \code{\link{mic}} (see \code{\link[=as.mic]{as.mic()}})
}
}
\usage{

View File

@@ -1,10 +1,12 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/eucast_rules.R
\name{eucast_rules}
\alias{eucast_rules}
% Please edit documentation in R/interpretive_rules.R
\name{interpretive_rules}
\alias{interpretive_rules}
\alias{EUCAST}
\alias{eucast_rules}
\alias{clsi_rules}
\alias{eucast_dosage}
\title{Apply EUCAST Rules}
\title{Apply Interpretive Rules}
\source{
\itemize{
\item EUCAST Expert Rules. Version 2.0, 2012.\cr
@@ -19,13 +21,22 @@ Leclercq et al. \strong{EUCAST expert rules in antimicrobial susceptibility test
}
}
\usage{
eucast_rules(x, col_mo = NULL, info = interactive(),
rules = getOption("AMR_eucastrules", default = c("breakpoints",
"expected_phenotypes")), verbose = FALSE, version_breakpoints = 15,
interpretive_rules(x, col_mo = NULL, info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints",
"expected_phenotypes")), guideline = getOption("AMR_guideline", "EUCAST"),
verbose = FALSE, version_breakpoints = 15,
version_expected_phenotypes = 1.2, version_expertrules = 3.3,
ampc_cephalosporin_resistance = NA, only_sir_columns = any(is.sir(x)),
custom_rules = NULL, overwrite = FALSE, ...)
eucast_rules(x, col_mo = NULL, info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints",
"expected_phenotypes")), ...)
clsi_rules(x, col_mo = NULL, info = interactive(),
rules = getOption("AMR_interpretive_rules", default = c("breakpoints",
"expected_phenotypes")), ...)
eucast_dosage(ab, administration = "iv", version_breakpoints = 15)
}
\arguments{
@@ -35,7 +46,9 @@ eucast_dosage(ab, administration = "iv", version_breakpoints = 15)
\item{info}{A \link{logical} to indicate whether progress should be printed to the console - the default is only print while in interactive sessions.}
\item{rules}{A \link{character} vector that specifies which rules should be applied. Must be one or more of \code{"breakpoints"}, \code{"expected_phenotypes"}, \code{"expert"}, \code{"other"}, \code{"custom"}, \code{"all"}, and defaults to \code{c("breakpoints", "expected_phenotypes")}. The default value can be set to another value using the package option \code{\link[=AMR-options]{AMR_eucastrules}}: \code{options(AMR_eucastrules = "all")}. If using \code{"custom"}, be sure to fill in argument \code{custom_rules} too. Custom rules can be created with \code{\link[=custom_eucast_rules]{custom_eucast_rules()}}.}
\item{rules}{A \link{character} vector that specifies which rules should be applied. Must be one or more of \code{"breakpoints"}, \code{"expected_phenotypes"}, \code{"expert"}, \code{"other"}, \code{"custom"}, \code{"all"}, and defaults to \code{c("breakpoints", "expected_phenotypes")}. The default value can be set to another value using the package option \code{\link[=AMR-options]{AMR_interpretive_rules}}: \code{options(AMR_interpretive_rules = "all")}. If using \code{"custom"}, be sure to fill in argument \code{custom_rules} too. Custom rules can be created with \code{\link[=custom_eucast_rules]{custom_eucast_rules()}}.}
\item{guideline}{A guideline name, either "EUCAST" (default) or "CLSI". This can be set with the package option \code{\link[=AMR-options]{AMR_guideline}}.}
\item{verbose}{A \link{logical} to turn Verbose mode on and off (default is off). In Verbose mode, the function does not apply rules to the data, but instead returns a data set in logbook form with extensive info about which rows and columns would be effected and in which way. Using Verbose mode takes a lot more time.}
@@ -57,15 +70,19 @@ eucast_dosage(ab, administration = "iv", version_breakpoints = 15)
\item{ab}{Any (vector of) text that can be coerced to a valid antimicrobial drug code with \code{\link[=as.ab]{as.ab()}}.}
\item{administration}{Route of administration, either "", "im", "iv", or "oral".}
\item{administration}{Route of administration, either "", "im", "iv", "oral", or NA.}
}
\value{
The input of \code{x}, possibly with edited values of antimicrobials. Or, if \code{verbose = TRUE}, a \link{data.frame} with all original and new values of the affected bug-drug combinations.
}
\description{
Apply rules from clinical breakpoints notes and expected resistant phenotypes as defined by the European Committee on Antimicrobial Susceptibility Testing (EUCAST, \url{https://www.eucast.org}), see \emph{Source}. Use \code{\link[=eucast_dosage]{eucast_dosage()}} to get a \link{data.frame} with advised dosages of a certain bug-drug combination, which is based on the \link{dosage} data set.
\strong{WORK IN PROGRESS}
To improve the interpretation of the antibiogram before EUCAST rules are applied, some non-EUCAST rules can applied at default, see \emph{Details}.
\strong{The \code{interpretive_rules()} function is new, to allow CLSI 'rules' too. The old \code{eucast_rules()} function will stay as a wrapper, but we need to generalise more parts of the underlying code to allow more than just EUCAST.}
Apply rules from clinical breakpoints notes and expected resistant phenotypes as defined by e.g. the European Committee on Antimicrobial Susceptibility Testing (EUCAST, \url{https://www.eucast.org}), see \emph{Source}. Use \code{\link[=eucast_dosage]{eucast_dosage()}} to get a \link{data.frame} with advised dosages of a certain bug-drug combination, which is based on the \link{dosage} data set.
To improve the interpretation of the antibiogram before CLSI/EUCAST interpretive rules are applied, some AMR-specific rules can be applied at default, see \emph{Details}.
}
\details{
\strong{Note:} This function does not translate MIC values to SIR values. Use \code{\link[=as.sir]{as.sir()}} for that. \cr
@@ -93,7 +110,7 @@ Before further processing, two non-EUCAST rules about drug combinations can be a
Important examples include amoxicillin and amoxicillin/clavulanic acid, and trimethoprim and trimethoprim/sulfamethoxazole. Needless to say, for these rules to work, both drugs must be available in the data set.
Since these rules are not officially approved by EUCAST, they are not applied at default. To use these rules, include \code{"other"} to the \code{rules} argument, or use \code{eucast_rules(..., rules = "all")}. You can also set the package option \code{\link[=AMR-options]{AMR_eucastrules}}, i.e. run \code{options(AMR_eucastrules = "all")}.
Since these rules are not officially approved by EUCAST, they are not applied at default. To use these rules, include \code{"other"} to the \code{rules} argument, or use \code{eucast_rules(..., rules = "all")}. You can also set the package option \code{\link[=AMR-options]{AMR_interpretive_rules}}, i.e. run \code{options(AMR_interpretive_rules = "all")}.
}
}
\section{Download Our Reference Data}{

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@@ -18,7 +18,7 @@ intrinsic_resistant
Data set containing 'EUCAST Expected Resistant Phenotypes' of \emph{all} bug-drug combinations between the \link{microorganisms} and \link{antimicrobials} data sets.
}
\details{
This data set is currently based on \href{https://www.eucast.org/expert_rules_and_expected_phenotypes}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023).
This data set is currently based on \href{https://www.eucast.org/bacteria/important-additional-information/expert-rules/}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023).
This data set is internally used by:
\itemize{

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@@ -136,7 +136,7 @@ Custom guidelines can be set with the \code{\link[=custom_mdro_guideline]{custom
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}

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@@ -13,7 +13,7 @@ A \link[tibble:tibble]{tibble} with 78 679 observations and 26 variables:
\item \code{kingdom}, \code{phylum}, \code{class}, \code{order}, \code{family}, \code{genus}, \code{species}, \code{subspecies}\cr Taxonomic rank of the microorganism. Note that for fungi, \emph{phylum} is equal to their taxonomic \emph{division}. Also, for fungi, \emph{subkingdom} and \emph{subdivision} were left out since they do not occur in the bacterial taxonomy.
\item \code{rank}\cr Text of the taxonomic rank of the microorganism, such as \code{"species"} or \code{"genus"}
\item \code{ref}\cr Author(s) and year of related scientific publication. This contains only the \emph{first surname} and year of the \emph{latest} authors, e.g. "Wallis \emph{et al.} 2006 \emph{emend.} Smith and Jones 2018" becomes "Smith \emph{et al.}, 2018". This field is directly retrieved from the source specified in the column \code{source}. Moreover, accents were removed to comply with CRAN that only allows ASCII characters.
\item \code{oxygen_tolerance} \cr Oxygen tolerance, either "aerobe", "anaerobe", "anaerobe/microaerophile", "facultative anaerobe", "likely facultative anaerobe", or "microaerophile". These data were retrieved from BacDive (see \emph{Source}). Items that contain "likely" are missing from BacDive and were extrapolated from other species within the same genus to guess the oxygen tolerance. Currently 68.3\% of all ~39 000 bacteria in the data set contain an oxygen tolerance.
\item \code{oxygen_tolerance} \cr Oxygen tolerance, either "aerobe", "anaerobe", "anaerobe/microaerophile", "facultative anaerobe", "likely facultative anaerobe", "microaerophile", or NA. These data were retrieved from BacDive (see \emph{Source}). Items that contain "likely" are missing from BacDive and were extrapolated from other species within the same genus to guess the oxygen tolerance. Currently 68.3\% of all ~39 000 bacteria in the data set contain an oxygen tolerance.
\item \code{source}\cr Either "GBIF", "LPSN", "Manually added", "MycoBank", or "manually added" (see \emph{Source})
\item \code{lpsn}\cr Identifier ('Record number') of List of Prokaryotic names with Standing in Nomenclature (LPSN). This will be the first/highest LPSN identifier to keep one identifier per row. For example, \emph{Acetobacter ascendens} has LPSN Record number 7864 and 11011. Only the first is available in the \code{microorganisms} data set. \emph{\strong{This is a unique identifier}}, though available for only ~33 000 records.
\item \code{lpsn_parent}\cr LPSN identifier of the parent taxon

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@@ -197,7 +197,7 @@ Determination of the Gram stain (\code{\link[=mo_gramstain]{mo_gramstain()}}) wi
Determination of yeasts (\code{\link[=mo_is_yeast]{mo_is_yeast()}}) will be based on the taxonomic kingdom and class. \emph{Budding yeasts} are yeasts that reproduce asexually through a process called budding, where a new cell develops from a small protrusion on the parent cell. Taxonomically, these are members of the phylum Ascomycota, class Saccharomycetes (also called Hemiascomycetes) or Pichiomycetes. \emph{True yeasts} quite specifically refers to yeasts in the underlying order Saccharomycetales (such as \emph{Saccharomyces cerevisiae}). Thus, for all microorganisms that are member of the taxonomic class Saccharomycetes or Pichiomycetes, the function will return \code{TRUE}. It returns \code{FALSE} otherwise (or \code{NA} when the input is \code{NA} or the MO code is \code{UNKNOWN}).
Determination of intrinsic resistance (\code{\link[=mo_is_intrinsic_resistant]{mo_is_intrinsic_resistant()}}) will be based on the \link{intrinsic_resistant} data set, which is based on \href{https://www.eucast.org/expert_rules_and_expected_phenotypes}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023). The \code{\link[=mo_is_intrinsic_resistant]{mo_is_intrinsic_resistant()}} function can be vectorised over both argument \code{x} (input for microorganisms) and \code{ab} (input for antimicrobials).
Determination of intrinsic resistance (\code{\link[=mo_is_intrinsic_resistant]{mo_is_intrinsic_resistant()}}) will be based on the \link{intrinsic_resistant} data set, which is based on \href{https://www.eucast.org/bacteria/important-additional-information/expert-rules/}{'EUCAST Expected Resistant Phenotypes' v1.2} (2023). The \code{\link[=mo_is_intrinsic_resistant]{mo_is_intrinsic_resistant()}} function can be vectorised over both argument \code{x} (input for microorganisms) and \code{ab} (input for antimicrobials).
Determination of bacterial oxygen tolerance (\code{\link[=mo_oxygen_tolerance]{mo_oxygen_tolerance()}}) will be based on BacDive, see \emph{Source}. The function \code{\link[=mo_is_anaerobic]{mo_is_anaerobic()}} only returns \code{TRUE} if the oxygen tolerance is \code{"anaerobe"}, indicting an obligate anaerobic species or genus. It always returns \code{FALSE} for species outside the taxonomic kingdom of Bacteria.

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@@ -181,7 +181,7 @@ When manually added though, they allow to rescale the MIC range with an 'inside'
\subsection{The \verb{scale_*_sir()} Functions}{
The functions \code{\link[=scale_x_sir]{scale_x_sir()}}, \code{\link[=scale_colour_sir]{scale_colour_sir()}}, and \code{\link[=scale_fill_sir]{scale_fill_sir()}} functions allow to plot the \link[=as.sir]{sir} class in the right order (S < SDD < I < R < NI).
The functions \code{\link[=scale_x_sir]{scale_x_sir()}}, \code{\link[=scale_colour_sir]{scale_colour_sir()}}, and \code{\link[=scale_fill_sir]{scale_fill_sir()}} functions allow to plot the \link[=as.sir]{sir} class in the right order (S < SDD < I < R < NI < WT < NWT < NS).
There is normally no need to add these scale functions to your plot, as they are applied automatically when plotting values of class \link[=as.sir]{sir}.

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@@ -136,7 +136,7 @@ Using \code{only_all_tested} has no impact when only using one antibiotic as inp
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}

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@@ -85,7 +85,7 @@ Valid options for the statistical model (argument \code{model}) are:
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}

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@@ -39,7 +39,8 @@ test_that("test-ab_property.R", {
expect_inherits(ab_tradenames("AMX"), "character")
expect_inherits(ab_tradenames(c("AMX", "AMX")), "list")
expect_identical(ab_group("AMX", language = NULL), "Beta-lactams/penicillins")
expect_identical(ab_group("AMX", language = NULL), "Aminopenicillins")
expect_identical(ab_group("AMX", language = NULL, all_groups = TRUE), c("Aminopenicillins", "Penicillins", "Beta-lactams"))
expect_identical(ab_atc_group1("AMX", language = NULL), "Beta-lactam antibacterials, penicillins")
expect_identical(ab_atc_group2("AMX", language = NULL), "Penicillins with extended spectrum")

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@@ -52,9 +52,11 @@ test_that("test-amr selectors.R", {
expect_equal(ncol(example_isolates[, oxazolidinones(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, penicillins(), drop = FALSE]), 7, tolerance = 0.5)
expect_equal(ncol(example_isolates[, phenicols(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, phosphonics(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, polymyxins(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, quinolones(), drop = FALSE]), 2, tolerance = 0.5)
expect_equal(ncol(example_isolates[, rifamycins(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, spiropyrimidinetriones(), drop = FALSE]), 0, tolerance = 0.5)
expect_equal(ncol(example_isolates[, streptogramins(), drop = FALSE]), 0, tolerance = 0.5)
expect_equal(ncol(example_isolates[, tetracyclines(), drop = FALSE]), 3, tolerance = 0.5)
expect_equal(ncol(example_isolates[, trimethoprims(), drop = FALSE]), 2, tolerance = 0.5)

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@@ -354,11 +354,11 @@ test_that("test-sir.R", {
mo = mo_name(rep(c("B_ESCHR_COLI", "B_PSTRL_MLTC", "B_MNNHM_HMLY"), 4)[-1])
)
out_vet <- as.sir(vet, host = vet$animal, guideline = "CLSI 2023")
out_vet <- suppressWarnings(as.sir(vet, host = vet$animal, guideline = "CLSI 2023"))
# give host column name instead of values
expect_identical(
out_vet,
as.sir(vet, host = "animal", guideline = "CLSI 2023")
suppressWarnings(as.sir(vet, host = "animal", guideline = "CLSI 2023"))
)
# check outcomes
@@ -384,8 +384,12 @@ test_that("test-sir.R", {
# ECOFF -----------------------------------------------------------------
expect_equal(
suppressMessages(as.sir(as.mic(2), "E. coli", "ampicillin", guideline = "EUCAST 2020", breakpoint_type = "ECOFF")),
as.sir("S")
suppressMessages(as.sir(as.mic(c(2, 32)), "E. coli", "ampicillin", guideline = "EUCAST 2020", breakpoint_type = "ECOFF")),
as.sir(c("WT", "NWT")) # since ECOFF returns WT/NWT at default
)
expect_equal(
suppressMessages(as.sir(as.mic(c(2, 32)), "E. coli", "ampicillin", guideline = "EUCAST 2020", breakpoint_type = "ECOFF", as_wt_nwt = FALSE)),
as.sir(c("S", "R"))
)
# old method
expect_warning(as.sir(as.mic(2), "E. coli", "ampicillin", guideline = "EUCAST 2020", ecoff = TRUE))
@@ -397,10 +401,10 @@ test_that("test-sir.R", {
out2 <- as.sir(as.mic(c("0.125", "<0.125", ">0.125")), mo = "E. coli", ab = "Cipro", guideline = "EUCAST 2025", breakpoint_type = "ECOFF", capped_mic_handling = "conservative")
out3 <- as.sir(as.mic(c("0.125", "<0.125", ">0.125")), mo = "E. coli", ab = "Cipro", guideline = "EUCAST 2025", breakpoint_type = "ECOFF", capped_mic_handling = "standard")
out4 <- as.sir(as.mic(c("0.125", "<0.125", ">0.125")), mo = "E. coli", ab = "Cipro", guideline = "EUCAST 2025", breakpoint_type = "ECOFF", capped_mic_handling = "lenient")
expect_equal(out1, as.sir(c("R", "R", "R")))
expect_equal(out2, as.sir(c("R", "NI", "R")))
expect_equal(out3, as.sir(c("R", "S", "R")))
expect_equal(out4, as.sir(c("R", "S", "R")))
expect_equal(out1, as.sir(c("NWT", "NWT", "NWT")))
expect_equal(out2, as.sir(c("NWT", "NI", "NWT")))
expect_equal(out3, as.sir(c("NWT", "WT", "NWT")))
expect_equal(out4, as.sir(c("NWT", "WT", "NWT")))
# Parallel computing ----------------------------------------------------

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@@ -40,7 +40,7 @@ test_that("test-translate.R", {
expect_identical(mo_fullname("CoNS", "es"), "Staphylococcus coagulasa negativo (SCN)")
expect_identical(mo_fullname("CoNS", "fi"), "Koagulaasinegatiivinen stafylokokki (KNS)")
expect_identical(mo_fullname("CoNS", "fr"), "Staphylococcus à coagulase négative (CoNS)")
expect_identical(mo_fullname("CoNS", "it"), "Staphylococcus negativo coagulasi (CoNS)")
expect_identical(mo_fullname("CoNS", "it"), "Stafilococco coagulasi-negativo (CoNS)")
expect_identical(mo_fullname("CoNS", "ja"), "コアグラーゼ陰性ブドウ球菌 (グラム陰性)")
expect_identical(mo_fullname("CoNS", "nl"), "Coagulase-negatieve Staphylococcus (CNS)")
expect_identical(mo_fullname("CoNS", "no"), "Koagulase-negative stafylokokker (KNS)")

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@@ -37,7 +37,7 @@ Conducting AMR data analysis unfortunately requires in-depth knowledge from diff
Of course, we cannot instantly provide you with knowledge and experience. But with this `AMR` package, we aimed at providing (1) tools to simplify antimicrobial resistance data cleaning, transformation and analysis, (2) methods to easily incorporate international guidelines and (3) scientifically reliable reference data, including the requirements mentioned above.
The `AMR` package enables standardised and reproducible AMR data analysis, with the application of evidence-based rules, determination of first isolates, translation of various codes for microorganisms and antimicrobial agents, determination of (multi-drug) resistant microorganisms, and calculation of antimicrobial resistance, prevalence and future trends.
The `AMR` package enables standardised and reproducible AMR data analysis, with the application of evidence-based rules, determination of first isolates, translation of various codes for microorganisms and antimicrobial drugs, determination of (multi-drug) resistant microorganisms, and calculation of antimicrobial resistance, prevalence and future trends.
# Preparation

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@@ -208,7 +208,7 @@ predictions %>%
### **Conclusion**
In this post, we demonstrated how to build a machine learning pipeline with the `tidymodels` framework and the `AMR` package. By combining selector functions like `aminoglycosides()` and `betalactams()` with `tidymodels`, we efficiently prepared data, trained a model, and evaluated its performance.
In this example, we demonstrated how to build a machine learning pipeline with the `tidymodels` framework and the `AMR` package. By combining selector functions like `aminoglycosides()` and `betalactams()` with `tidymodels`, we efficiently prepared data, trained a model, and evaluated its performance.
This workflow is extensible to other antimicrobial classes and resistance patterns, empowering users to analyse AMR data systematically and reproducibly.
@@ -267,10 +267,9 @@ testing_data <- testing(split)
# Define the recipe
mic_recipe <- recipe(esbl ~ ., data = training_data) %>%
remove_role(genus, old_role = "predictor") %>% # Remove non-informative variable
step_mic_log2(all_mic_predictors()) #%>% # Log2 transform all MIC predictors
# prep()
step_mic_log2(all_mic_predictors()) # Log2 transform all MIC predictors
mic_recipe
prep(mic_recipe)
```
**Explanation:**
@@ -315,7 +314,7 @@ fitted <- fit(workflow_model, training_data)
# Generate predictions
predictions <- predict(fitted, testing_data) %>%
bind_cols(predict(fitted, out_testing, type = "prob")) %>% # add probabilities
bind_cols(predict(fitted, testing_data, type = "prob")) %>% # add probabilities
bind_cols(testing_data)
# Evaluate model performance
@@ -331,7 +330,7 @@ metrics
- `predict()`: Produces predictions for unseen test data.
- `metric_set()`: Allows evaluating multiple classification metrics. This will make `our_metrics` to become a function that we can use to check the predictions with.
It appears we can predict ESBL gene presence with a positive predictive value (PPV) of `r round(metrics[metrics$.metric == "ppv", ]$.estimate, 3) * 100`% and a negative predictive value (NPV) of `r round(metrics[metrics$.metric == "npv", ]$.estimate, 3) * 100` using a simplistic logistic regression model.
It appears we can predict ESBL gene presence with a positive predictive value (PPV) of `r round(metrics[metrics$.metric == "ppv", ]$.estimate, 3) * 100`% and a negative predictive value (NPV) of `r round(metrics[metrics$.metric == "npv", ]$.estimate, 3) * 100`% using a simplistic logistic regression model.
### **Visualising Predictions**
@@ -366,9 +365,10 @@ predictions %>%
limits = c(0.5, 1)) +
theme_minimal()
```
### **Conclusion**
In this example, we showcased how the new `AMR`-specific recipe steps simplify working with `<mic>` columns in `tidymodels`. The `step_mic_log2()` transformation converts ordered MICs to log2-transformed numerics, improving compatibility with classification models.
In this example, we showcased how the new `AMR`-specific recipe steps simplify working with `<mic>` columns in `tidymodels`. The `step_mic_log2()` transformation converts MICs (with or without operators) to log2-transformed numerics, improving compatibility with classification models.
This pipeline enables realistic, reproducible, and interpretable modelling of antimicrobial resistance data.