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86 lines
3.0 KiB
Markdown
86 lines
3.0 KiB
Markdown
# Data Set with Treatment Dosages as Defined by EUCAST
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EUCAST breakpoints used in this package are based on the dosages in this
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data set. They can be retrieved with
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[`eucast_dosage()`](https://amr-for-r.org/reference/eucast_rules.md).
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## Usage
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``` r
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dosage
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```
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## Format
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A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 759
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observations and 9 variables:
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- `ab`
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Antimicrobial ID as used in this package (such as `AMC`), using the
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official EARS-Net (European Antimicrobial Resistance Surveillance
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Network) codes where available
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- `name`
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Official name of the antimicrobial drug as used by WHONET/EARS-Net or
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the WHO
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- `type`
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Type of the dosage, either "high_dosage", "standard_dosage", or
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"uncomplicated_uti"
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- `dose`
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Dose, such as "2 g" or "25 mg/kg"
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- `dose_times`
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Number of times a dose must be administered
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- `administration`
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Route of administration, either "", "im", "iv", or "oral"
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- `notes`
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Additional dosage notes
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- `original_txt`
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Original text in the PDF file of EUCAST
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- `eucast_version`
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Version number of the EUCAST Clinical Breakpoints guideline to which
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these dosages apply, either 15, 14, 13.1, 12, or 11
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## Download Our Reference Data
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All reference data sets in the AMR package - including information on
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microorganisms, antimicrobials, and clinical breakpoints - are freely
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available for download in multiple formats: R, MS Excel, Apache Feather,
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Apache Parquet, SPSS, and Stata.
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For maximum compatibility, we also provide machine-readable,
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tab-separated plain text files suitable for use in any software,
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including laboratory information systems.
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Visit [our website for direct download
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links](https://amr-for-r.org/articles/datasets.html), or explore the
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actual files in [our GitHub
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repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
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## Examples
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``` r
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dosage
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#> # A tibble: 759 × 9
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#> ab name type dose dose_times administration notes original_txt
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#> <ab> <chr> <chr> <chr> <int> <chr> <chr> <chr>
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#> 1 AMK Amikacin stan… 25-3… 1 iv "" "25-30 mg/k…
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#> 2 AMX Amoxicillin high… 2 g 6 iv "" "2 g x 6 iv"
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#> 3 AMX Amoxicillin stan… 1 g 3 iv "" "1 g x 3-4 …
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#> 4 AMX Amoxicillin high… 0.75… 3 oral "" "0.75-1 g x…
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#> 5 AMX Amoxicillin stan… 0.5 g 3 oral "" "0.5 g x 3 …
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#> 6 AMX Amoxicillin unco… 0.5 g 3 oral "" "0.5 g x 3 …
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#> 7 AMC Amoxicillin/cl… high… 2 g … 3 iv "" "(2 g amoxi…
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#> 8 AMC Amoxicillin/cl… stan… 1 g … 3 iv "" "(1 g amoxi…
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#> 9 AMC Amoxicillin/cl… high… 0.87… 3 oral "" "(0.875 g a…
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#> 10 AMC Amoxicillin/cl… stan… 0.5 … 3 oral "" "(0.5 g amo…
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#> # ℹ 749 more rows
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#> # ℹ 1 more variable: eucast_version <dbl>
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```
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