1
0
mirror of https://github.com/msberends/AMR.git synced 2025-01-29 00:24:42 +01:00
AMR/data-raw
2025-01-28 15:16:55 +01:00
..
_generate_GPT_knowledge_input.sh (v2.1.1.9131) implement testthat 2025-01-27 21:43:10 +01:00
_generate_python_wrapper.sh (v2.1.1.9133) update math formulae 2025-01-27 22:43:35 +01:00
_language_update.R
_pre_commit_checks.R (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
ab.md5 (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
AMR intro.jpg (v2.1.1.9112) unit test 2024-12-06 18:01:54 +01:00
AMR new logo.txt
AMR_intro.ai
AMR_vet.html
AMR_vet.qmd
AMRforRGPT_python.pdf
AMRforRGPT_python.pptx
AMRforRGPT.pdf
AMRforRGPT.pptx
AMRforRGPT.svg
antibiotics.dta (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.feather (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.parquet (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.rds (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.sav (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.txt (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antibiotics.xlsx (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
antivirals.dta
antivirals.feather
antivirals.parquet
antivirals.rds
antivirals.sav
antivirals.txt
antivirals.xlsx
av.md5
bacdive.csv
bartlett_et_al_2022_human_pathogens.xlsx
clin_break.md5
clinical_breakpoints.dta
clinical_breakpoints.feather
clinical_breakpoints.parquet
clinical_breakpoints.rds
clinical_breakpoints.sav
clinical_breakpoints.txt
clinical_breakpoints.xlsx
create_survey_page.R
dosage.dta
dosage.feather
dosage.md5
dosage.parquet
dosage.rds
dosage.sav
dosage.txt
dosage.xlsx
Dosages_v_11.0_Breakpoint_Tables.xlsx
Dosages_v_12.0_Breakpoint_Tables.pdf
Dosages_v_12.0_Breakpoint_Tables.xlsx
Dosages_v_13.0_Breakpoint_Tables.pdf
Dosages_v_13.0_Breakpoint_Tables.xlsx
eucast_rules.tsv (v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175 2024-12-06 15:44:20 +01:00
extractATCs.R
gpt_training_text_v2.1.1.9135.txt (v2.1.1.9135) documentation fix 2025-01-28 15:16:55 +01:00
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf
intrinsic_resistant.dta
intrinsic_resistant.feather
intrinsic_resistant.md5
intrinsic_resistant.parquet
intrinsic_resistant.rds
intrinsic_resistant.sav
intrinsic_resistant.txt
intrinsic_resistant.xlsx
intrinsicR.md5
logo.old.svg
logo.svg
Loinc.csv
loinc.R
microorganisms.codes.dta
microorganisms.codes.feather
microorganisms.codes.md5
microorganisms.codes.parquet
microorganisms.codes.rds
microorganisms.codes.sav
microorganisms.codes.txt
microorganisms.codes.xlsx
microorganisms.dta
microorganisms.feather
microorganisms.groups.dta
microorganisms.groups.feather
microorganisms.groups.md5
microorganisms.groups.parquet
microorganisms.groups.rds
microorganisms.groups.sav
microorganisms.groups.txt
microorganisms.groups.xlsx
microorganisms.md5
microorganisms.parquet
microorganisms.rds
microorganisms.sav
microorganisms.txt (v2.1.1.9089) website update 2024-10-04 15:44:05 +02:00
microorganisms.xlsx
mo.md5
organisms.rds
poorman_prepend.R
Preference animal species groups.xlsx
read_EUCAST.R
reproduction_of_antibiotics.R (v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
reproduction_of_antivirals.R
reproduction_of_clinical_breakpoints.R
reproduction_of_dosage.R
reproduction_of_example_isolates_unclean.R
reproduction_of_intrinsic_resistant.R
reproduction_of_microorganisms.groups.R
reproduction_of_microorganisms.R (v2.1.1.9131) implement testthat 2025-01-27 21:43:10 +01:00
reproduction_of_poorman.R
salmonellae.R
salmonellae.rds
salonella_fix.R
SNOMED_PHVS_Microorganism_CDC_V12.txt
species groups.R
Species groups.xlsx
taxonomy0.rds
taxonomy1.rds
taxonomy1b.rds
taxonomy1c.rds
taxonomy2.rds
taxonomy2b.rds
taxonomy2c.rds
taxonomy3.rds
taxonomy3b.rds
taxonomy_gbif.rds
taxonomy_lpsn_missing.rds
taxonomy_lpsn.rds
taxonomy_mycobank.rds
toxoplasma.R
translations.tsv
v_10.0_Breakpoint_Tables.xlsx
v_11.0_Breakpoint_Tables.xlsx
v_12.0_Breakpoint_Tables.xlsx
v_13.0_Breakpoint_Tables.xlsx
whonet_bugfixes.R