Go to file
dr. M.S. (Matthijs) Berends 04cd0d25db (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
R (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
data (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
data-raw (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
docs (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
inst (v0.7.1.9078) unit tests 2019-09-20 14:50:02 +02:00
man (v0.7.1.9082) CI fix 2019-09-23 14:37:24 +02:00
pkgdown (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
tests (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
vignettes (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
.Rbuildignore (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
.gitignore (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
.gitlab-ci.R new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
.gitlab-ci.yml (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
DESCRIPTION (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
LICENSE (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
NAMESPACE (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
NEWS.md (v0.7.1.9087) small fix 2019-09-23 23:09:50 +02:00
README.md (v0.7.1.9068) gramstain to freq() 2019-08-30 14:50:56 +02:00
_pkgdown.yml (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
appveyor.yml (v0.7.1.9020) CI fix 2 2019-08-03 21:51:08 +02:00
codecov.yml (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
cran-comments.md (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
git_commit.sh new git flow to repository 2019-05-20 14:16:53 +02:00
git_merge.sh (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
git_premaster.sh (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
git_release.sh (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
git_siteonly.sh (v0.7.1.9003) website update 2019-06-23 21:35:17 +02:00
index.md (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00

README.md

% AMR (for R)

AMR (for R)

Not a developer? Then please visit our website https://msberends.gitlab.io/AMR to read about this package.

It contains documentation about all of the included functions and also a comprehensive tutorial about how to conduct AMR analysis.

Development source

NOTE: the original source code is on GitLab (https://gitlab.com/msberends/AMR). There is a mirror repository on GitHub (https://github.com/msberends/AMR). As the mirror process is automated by GitLab, both repositories always contain the latest changes.

This is the development source of AMR, a free and open-source R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial properties by using evidence-based methods.

Authors

Matthijs S. Berends1,2, Christian F. Luz1, Alex W. Friedrich1, Bhanu N.M. Sinha1, Casper J. Albers3, Corinna Glasner1

1 Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands - rug.nl umcg.nl
2 Certe Medical Diagnostics & Advice, Groningen, the Netherlands - certe.nl
3 Heymans Institute for Psychological Research, University of Groningen, Groningen, the Netherlands - rug.nl

How to get this package

Please see our website.

This R package is licensed under the GNU General Public License (GPL) v2.0. In a nutshell, this means that this package:

  • May be used for commercial purposes

  • May be used for private purposes

  • May not be used for patent purposes

  • May be modified, although:

    • Modifications must be released under the same license when distributing the package
    • Changes made to the code must be documented
  • May be distributed, although:

    • Source code must be made available when the package is distributed
    • A copy of the license and copyright notice must be included with the package.
  • Comes with a LIMITATION of liability

  • Comes with NO warranty