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aa_amr-package.R
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v2.1.1
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2023-10-22 15:51:27 +02:00 |
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aa_globals.R
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(v2.1.1.9048) vctrs update for sir
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2024-06-13 20:55:17 +02:00 |
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aa_helper_functions.R
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(v2.1.1.9053) add `verbose` to `as.sir()`, unit test fix
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2024-06-17 10:38:45 +02:00 |
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aa_helper_pm_functions.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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aa_options.R
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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ab.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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ab_from_text.R
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allow column name for `ab` in `as.sir()`
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2024-05-20 21:29:13 +02:00 |
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ab_property.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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ab_selectors.R
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(v2.1.1.9052) unit test fix
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2024-06-16 20:53:50 +02:00 |
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age.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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antibiogram.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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atc_online.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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av.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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av_from_text.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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av_property.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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availability.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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bug_drug_combinations.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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count.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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custom_antimicrobials.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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custom_eucast_rules.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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custom_microorganisms.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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data.R
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(v2.1.1.9057) fix for missing breakpoints
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2024-06-17 16:52:12 +02:00 |
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disk.R
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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eucast_rules.R
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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export_biosample.R
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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first_isolate.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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g.test.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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get_episode.R
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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ggplot_pca.R
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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ggplot_sir.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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guess_ab_col.R
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rename pre-commit hook to pre-commit checks (no-check)
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2024-04-23 10:55:48 +02:00 |
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italicise_taxonomy.R
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Added support for 'html' in italicize_taxonomy() (#134)
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2024-02-13 13:47:07 +01:00 |
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join_microorganisms.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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key_antimicrobials.R
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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kurtosis.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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like.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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mdro.R
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new SDD and N for `as.sir()`
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2024-05-20 15:27:04 +02:00 |
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mean_amr_distance.R
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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mic.R
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(v2.1.1.9041) antibiotics update
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2024-06-08 17:35:25 +02:00 |
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mo.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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mo_matching_score.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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mo_property.R
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new `mo_group_members()`
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2024-04-19 10:18:21 +02:00 |
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mo_source.R
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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pca.R
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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plot.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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proportion.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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random.R
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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resistance_predict.R
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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sir.R
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(v2.1.1.9059) documentation fix
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2024-06-17 22:26:05 +02:00 |
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sir_calc.R
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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sir_df.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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skewness.R
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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sysdata.rda
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(v2.1.1.9058) fix hosts, add translations
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2024-06-17 22:19:38 +02:00 |
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translate.R
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(v2.1.1.9042) update translations and example isolates
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2024-06-09 11:31:04 +02:00 |
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vctrs.R
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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whocc.R
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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zz_deprecated.R
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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zzz.R
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(v2.1.1.9053) add `verbose` to `as.sir()`, unit test fix
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2024-06-17 10:38:45 +02:00 |
dr. M.S. (Matthijs) Berends
0c3d81f32e