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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 18:46:11 +01:00
AMR/man
2024-09-22 11:45:51 +02:00
..
figures website update 2022-12-11 11:44:29 +01:00
ab_from_text.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ab_property.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
add_custom_antimicrobials.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
add_custom_microorganisms.Rd unit testing R4.3 2023-05-26 20:37:00 +02:00
age_groups.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
age.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
AMR-options.Rd (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
AMR.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
antibiogram.Rd (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
antibiotic_class_selectors.Rd (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
antibiotics.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
as.ab.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
as.av.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
as.disk.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.mic.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
as.mo.Rd (v2.1.1.9072) 2024-09-19 11:46:17 +02:00
as.sir.Rd (v2.1.1.9072) 2024-09-19 11:46:17 +02:00
atc_online.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
av_from_text.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
av_property.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
availability.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
bug_drug_combinations.Rd new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
clinical_breakpoints.Rd (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
count.Rd new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
custom_eucast_rules.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
dosage.Rd Update clinical breakpoints and fix some as.mo() bugs (#117) 2023-06-22 15:10:59 +02:00
eucast_rules.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
example_isolates_unclean.Rd bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
example_isolates.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
export_ncbi_biosample.Rd (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
first_isolate.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
g.test.Rd new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
get_episode.Rd update NEWS 2023-03-11 14:43:31 +01:00
ggplot_pca.Rd Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
ggplot_sir.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
guess_ab_col.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
intrinsic_resistant.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
italicise_taxonomy.Rd Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
join.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
kurtosis.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
like.Rd fix documentation 2023-03-16 08:55:37 +01:00
mdro.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
mean_amr_distance.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
microorganisms.codes.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
microorganisms.groups.Rd Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
microorganisms.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
mo_matching_score.Rd (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
mo_property.Rd (v2.1.1.9072) 2024-09-19 11:46:17 +02:00
mo_source.Rd make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
pca.Rd new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
plot.Rd (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
proportion.Rd new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
random.Rd (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
resistance_predict.Rd breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
skewness.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
translate.Rd prepare for CRAN 2023-10-20 14:51:48 +02:00
WHOCC.Rd new Norwegian link 2024-03-03 23:24:57 +01:00
WHONET.Rd fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00