mirror of
https://github.com/msberends/AMR.git
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79 lines
4.0 KiB
Bash
Executable File
79 lines
4.0 KiB
Bash
Executable File
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis for R #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# LICENCE #
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# (c) 2018-2020 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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########################################################################
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# `git_premaster.sh` takes 3 parameters: #
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# 1. Commit message (character) [mandatory] #
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# 2. Lazy website generation (logical), with TRUE only changed #
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# files will be processed [defaults to TRUE] #
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# 3. Version number to be used in DESCRIPTION and NEWS.md #
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# [defaults to current tag and last commit number + 9000] #
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# #
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# To push new commits to the premaster branch, run: #
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# bash git_premaster.sh "commit message" #
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# This creates auto version numbering in DESCRIPTION and NEWS.md. #
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# #
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# After successful test checks, merge it to the master branch with: #
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# bash git_merge.sh #
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# #
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# To prerelease a new version number, run: #
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# bash git_premaster.sh "v1.x.x" FALSE "1.x.x" #
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# #
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# To only update the website, run: #
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# bash git_siteonly.sh #
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# (which is short for 'bash git_premaster.sh "website update" FALSE') #
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########################################################################
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# stash current changes
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# git stash --quiet
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# go to master
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git checkout master --quiet
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echo "• changed branch to master"
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# import everything from premaster
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git merge premaster --quiet
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# and send it to git
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git push --quiet
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echo "• pushed changes to master"
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# return to premaster
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git checkout premaster --quiet
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echo "• changed branch back to premaster"
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git status --short
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echo
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read -p "Use R-hub to simulate all CRAN checks (y/N)? " choice
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case "$choice" in
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y|Y|j|J ) ;;
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* ) exit 1;;
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esac
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Rscript -e "rhub::check(devtools::build(), platform = rhub::platforms()[!is.na(rhub::platforms()$`cran-name`), 'name'])"
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echo
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# and get stashed changes back
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# git stash apply --quiet
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