mirror of
https://github.com/msberends/AMR.git
synced 2025-09-05 08:09:43 +02:00
76 lines
3.2 KiB
YAML
76 lines
3.2 KiB
YAML
# ==================================================================== #
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# TITLE: #
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# AMR: An R Package for Working with Antimicrobial Resistance Data #
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# #
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# SOURCE CODE: #
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# https://github.com/msberends/AMR #
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# #
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# PLEASE CITE THIS SOFTWARE AS: #
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# Berends MS, Luz CF, Friedrich AW, et al. (2022). #
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# AMR: An R Package for Working with Antimicrobial Resistance Data. #
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# Journal of Statistical Software, 104(3), 1-31. #
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# https://doi.org/10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen and the University Medical #
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# Center Groningen in The Netherlands, in collaboration with many #
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# colleagues from around the world, see our website. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://amr-for-r.org #
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# ==================================================================== #
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on:
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push:
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# only on main
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branches: "main"
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name: Update TODO Tracker
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jobs:
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update-todo:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Generate TODO list from R/
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run: |
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echo "## TODO Report" > todo.md
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echo "" >> todo.md
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echo "_This issue is automatically updated on each push to `main`._" >> todo.md
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echo "" >> todo.md
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todos=$(find R/ -type f ! -name "sysdata.rda" -exec grep -nH "TODO" {} + || true)
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if [ -z "$todos" ]; then
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echo "✅ No TODOs found." >> todo.md
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else
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echo "$todos" | awk -F: '
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{
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file = $1
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line = $2
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text = substr($0, index($0,$3))
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if (file != last_file) {
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if (last_file != "") print ""
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print "### " file
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last_file = file
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}
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printf "L%s: %s\n", line, text
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}
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' >> todo.md
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fi
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- name: Update GitHub issue
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uses: peter-evans/create-or-update-comment@v4
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with:
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token: ${{ secrets.GH_REPO_SCOPE }}
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issue-number: 231
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body-file: todo.md
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edit-mode: replace
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