Matthijs Berends 3f9f931777 (v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

..

ab_from_text.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

ab_property.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

add_custom_antimicrobials.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

add_custom_microorganisms.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

age_groups.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

age.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

amr_course.Rd

(v3.0.1.9034) Add amr_course()

2026-03-11 16:07:31 +01:00

AMR-deprecated.Rd

Generalise interpretive rules for multi-guideline support (#268) (#283)

2026-05-01 18:38:51 +01:00

AMR-options.Rd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

amr-tidymodels.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

AMR.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

antibiogram.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

antimicrobial_selectors.Rd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

antimicrobials.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

as.ab.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

as.av.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

as.disk.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

as.mic.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

as.mo.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

as.sir.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

atc_online.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

av_from_text.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

av_property.Rd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

availability.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

bug_drug_combinations.Rd

(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()

2026-02-08 23:15:40 +01:00

clinical_breakpoints.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

count.Rd

(v3.0.1.9021) add guideline to resistance() and susceptibility()

2026-02-12 20:34:06 +01:00

custom_interpretive_rules.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

custom_mdro_guideline.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

dosage.Rd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

esbl_isolates.Rd

(v3.0.1.9007) fix #246

2026-01-06 23:08:50 +01:00

example_isolates_unclean.Rd

(v2.1.1.9260) fix antibiogram

2025-04-29 16:15:18 +02:00

example_isolates.Rd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

export_ncbi_biosample.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

first_isolate.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

g.test.Rd

(v3.0.1.9057) website fix

2026-05-02 14:56:26 +02:00

get_episode.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

ggplot_pca.Rd

(v3.0.1.9057) website fix

2026-05-02 14:56:26 +02:00

ggplot_sir.Rd

(v3.0.0.9015) plotting fix

2025-07-19 14:06:36 +02:00

guess_ab_col.Rd

(v2.1.1.9276) mdro() fix

2025-05-15 10:39:48 +02:00

interpretive_rules.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

intrinsic_resistant.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

italicise_taxonomy.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

join.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

key_antimicrobials.Rd

(v2.1.1.9276) mdro() fix

2025-05-15 10:39:48 +02:00

kurtosis.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

like.Rd

(v2.1.1.9232) is.mic() iteration, documentation cleanup

2025-03-31 10:51:31 +02:00

mdro.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

mean_amr_distance.Rd

(v3.0.0.9007) allow any tidyselect language in as.sir()

2025-07-17 14:29:35 +02:00

microorganisms.codes.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

microorganisms.groups.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

microorganisms.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

mo_matching_score.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

mo_property.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

mo_source.Rd

(v3.0.1.9037) improve cli messages

2026-03-22 20:44:37 +01:00

pca.Rd

Generalise interpretive rules for multi-guideline support (#268) (#283)

2026-05-01 18:38:51 +01:00

plot.Rd

(v3.0.1.9047) fix #272

2026-04-21 22:11:40 +02:00

proportion.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

random.Rd

(v3.0.0.9003) eucast_rules fix, new tidymodels integration

2025-06-13 14:03:21 +02:00

resistance_predict.Rd

(v3.0.1.9018) fixes #249

2026-01-16 10:57:03 +01:00

skewness.Rd

(v2.1.1.9233) chore: make all argument texts full sentences

2025-03-31 14:53:24 +02:00

top_n_microorganisms.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

translate.Rd

(v2.1.1.9270) Add support for Korean, fix ATCs

2025-05-04 14:24:43 +02:00

WHOCC.Rd

(v3.0.1.9059) Update taxonomy of microorganisms

2026-06-23 01:38:13 +02:00

WHONET.Rd

(v2.1.1.9260) fix antibiogram

2025-04-29 16:15:18 +02:00