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AMR/man
History
dr. M.S. (Matthijs) Berends 45a9697c84 unit tests
2023-02-12 17:10:48 +01:00
..
figures
website update
2022-12-11 11:44:29 +01:00
ab_from_text.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
ab_property.Rd
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
add_custom_antimicrobials.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
add_custom_microorganisms.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
age_groups.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
age.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
AMR-deprecated.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
AMR-options.Rd
add include_screening to as.sir()
2023-02-12 15:09:54 +01:00
AMR.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
antibiogram.Rd
unit tests
2023-02-12 17:10:48 +01:00
antibiotic_class_selectors.Rd
fix first isolate
2023-02-10 13:13:17 +01:00
antibiotics.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.ab.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.av.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.disk.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mic.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mo.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.sir.Rd
add include_screening to as.sir()
2023-02-12 15:09:54 +01:00
atc_online.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
av_from_text.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
av_property.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
availability.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
bug_drug_combinations.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
clinical_breakpoints.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
count.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
custom_eucast_rules.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
dosage.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
eucast_rules.Rd
fix first isolate
2023-02-10 13:13:17 +01:00
example_isolates_unclean.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
example_isolates.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
first_isolate.Rd
fix first isolate
2023-02-10 13:13:17 +01:00
g.test.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
get_episode.Rd
unit tests
2023-02-12 17:10:48 +01:00
ggplot_pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
ggplot_sir.Rd
add all options to documentation
2023-01-23 20:07:57 +01:00
guess_ab_col.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
intrinsic_resistant.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
italicise_taxonomy.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
join.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd
fix first isolate
2023-02-10 13:13:17 +01:00
kurtosis.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
like.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
mdro.Rd
fix first isolate
2023-02-10 13:13:17 +01:00
mean_amr_distance.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
microorganisms.codes.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
microorganisms.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
mo_matching_score.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
mo_property.Rd
fix for Salmonella group A, unit tests
2023-02-10 16:47:25 +01:00
mo_source.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
plot.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
proportion.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
random.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
resistance_predict.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
skewness.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
translate.Rd
fix for bind_rows2, added 4 langs
2023-02-11 21:57:12 +01:00
WHOCC.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
WHONET.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00