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45a9697c84
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unit tests
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2023-02-12 17:10:48 +01:00 |
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68abb00c59
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add include_screening to as.sir()
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2023-02-12 15:09:54 +01:00 |
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b146de6d7f
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fix for bind_rows2, added 4 langs
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2023-02-11 21:57:12 +01:00 |
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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aa48c6bf53
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pm fixes
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2023-02-08 16:51:41 +01:00 |
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f7dd890b79
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fixes
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2023-02-06 12:38:52 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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593d740b84
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documentation, file permissions
|
2023-01-19 12:54:53 +01:00 |
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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ca79068604
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Fix for adding MO's
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2023-01-14 17:10:10 +01:00 |
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33f269e2f4
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contrib update
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2023-01-12 23:16:05 +01:00 |
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1029aa2fdc
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algorithm improvement
|
2023-01-07 14:53:14 +01:00 |
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08fe5a88c0
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documentation
|
2023-01-07 01:54:46 +01:00 |
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2375bfdcb5
|
documentation
|
2023-01-07 01:51:19 +01:00 |
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84ed8c32bb
|
documentation
|
2023-01-06 19:21:04 +01:00 |
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86e28bafce
|
add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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268ec31d92
|
unit tests
|
2023-01-05 18:21:48 +01:00 |
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a98d0d75ea
|
styler dep
|
2023-01-05 14:46:44 +01:00 |
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77d9cf1936
|
documentation
|
2022-12-30 13:02:37 +01:00 |
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61c0bdb7af
|
documentation
|
2022-12-28 15:04:59 +01:00 |
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ba3b237bdf
|
custom mo update
|
2022-12-28 14:20:10 +01:00 |
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f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
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f0a2cdbf5e
|
update mo algorithm
|
2022-12-20 16:14:04 +01:00 |
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b1b7534c78
|
incorporate Bartlett et al (2022)
|
2022-12-19 15:32:41 +01:00 |
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23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
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8da2467209
|
updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
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eed1c14b96
|
website update
|
2022-12-11 11:44:29 +01:00 |
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b1ead9c0fe
|
doc update
|
2022-12-10 10:09:57 +01:00 |
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56dad34e68
|
update prevalence with new phyla
|
2022-12-09 13:37:08 +01:00 |
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510140fc55
|
Updated mo_gramstain() to reflect current taxonomy, fixes #83
|
2022-12-09 10:30:25 +01:00 |
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31fb81c382
|
revised as.rsi(), fix for mdro()
|
2022-11-24 20:29:00 +01:00 |
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f6862a139d
|
expert rules 12.0
|
2022-11-14 15:20:39 +01:00 |
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7ca44fb756
|
cleanup and new intro logo
|
2022-11-13 13:44:25 +01:00 |
|
Dr. Matthijs Berends
|
496c08d851
|
Implement extensive support for antiviral agents support (#77)
|
2022-11-13 08:46:10 +01:00 |
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2d90218305
|
documentation fix
|
2022-11-05 12:06:40 +01:00 |
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8dc94a9eda
|
documentation fix
|
2022-11-05 09:31:19 +01:00 |
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3b652983b7
|
documentation fix
|
2022-11-05 08:18:06 +01:00 |
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9444ed6d1d
|
fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
|
completely updated antibiotics
|
2022-10-30 14:31:45 +01:00 |
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3d9faf89cf
|
ATC and DDD update
|
2022-10-29 19:01:23 +02:00 |
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6ad7857d39
|
fix missing R breakpoints
|
2022-10-29 14:15:23 +02:00 |
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