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AMR/data-raw
History
Dr. Matthijs Berends 496c08d851
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
..
_install_deps.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
_language_update.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
_pre_commit_hook.R
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
ab.md5
fix antibiotics error
2022-10-30 21:05:46 +01:00
AMR_intro.ai
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
antibiotics.dta
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.feather
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.parquet
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.rds
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.sas
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.sav
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.txt
fix antibiotics error
2022-10-30 21:05:46 +01:00
antibiotics.xlsx
fix antibiotics error
2022-10-30 21:05:46 +01:00
antivirals.dta
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.feather
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.parquet
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.rds
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.sas
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.sav
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.txt
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
antivirals.xlsx
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
av.md5
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
create_survey_page.R
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
dosage.dta
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.feather
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.md5
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.parquet
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.rds
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.sas
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.sav
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.txt
fix antibiotics error
2022-10-30 21:05:46 +01:00
dosage.xlsx
fix antibiotics error
2022-10-30 21:05:46 +01:00
Dosages_v_11.0_Breakpoint_Tables.xlsx
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
eucast_rules.tsv
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
2021-11-29 10:38:38 +01:00
extractATCs.R
completely updated antibiotics
2022-10-30 14:31:45 +01:00
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
2021-11-28 23:01:26 +01:00
intrinsic_resistant.dta
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.feather
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.md5
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
intrinsic_resistant.parquet
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.rds
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.sas
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.sav
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.txt
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsic_resistant.xlsx
completely updated antibiotics
2022-10-30 14:31:45 +01:00
intrinsicR.md5
completely updated antibiotics
2022-10-30 14:31:45 +01:00
logo.svg
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
Loinc.csv
completely updated antibiotics
2022-10-30 14:31:45 +01:00
loinc.R
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
microorganisms.dta
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.feather
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.md5
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.parquet
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.rds
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.sas
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.sav
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
microorganisms.txt
fix txt export of microorganisms
2022-10-29 16:08:18 +02:00
microorganisms.xlsx
fix export of lists in antibiotics and antivirals
2022-10-29 16:17:48 +02:00
mo.md5
language updates
2022-08-19 12:33:14 +02:00
poorman_prepend.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
read_EUCAST.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
reproduction_of_antibiotics.R
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
reproduction_of_antivirals.R
Implement extensive support for antiviral agents support (#77)
2022-11-13 08:46:10 +01:00
reproduction_of_dosage.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
reproduction_of_example_isolates_unclean.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
reproduction_of_intrinsic_resistant.R
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
reproduction_of_microorganisms.R
completely updated antibiotics
2022-10-30 14:31:45 +01:00
reproduction_of_poorman.R
styled, unit test fix
2022-08-28 10:31:50 +02:00
reproduction_of_rsi_translation.R
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.dta
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.feather
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.parquet
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.rds
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.sas
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.sav
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.txt
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi_translation.xlsx
completely updated antibiotics
2022-10-30 14:31:45 +01:00
rsi.md5
completely updated antibiotics
2022-10-30 14:31:45 +01:00
SNOMED_PHVS_Microorganism_CDC_V12.txt
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
taxonomy_gbif.rds
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
taxonomy_lpsn.rds
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
taxonomy.rds
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
tinytest_1.3.1.tar.gz
(v1.7.1.9033) dplyr grouping fix on windows?
2021-08-30 15:01:32 +02:00
toxoplasma.R
styled, unit test fix
2022-08-28 10:31:50 +02:00
translations.tsv
fix for mo type translation
2022-10-06 12:11:51 +02:00
v_10.0_Breakpoint_Tables.xlsx
(v0.9.0.9022) inheritance fix
2020-02-10 14:18:15 +01:00
v_11.0_Breakpoint_Tables.xlsx
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
v_12.0_Breakpoint_Tables.xlsx
(v1.8.1.9007) website update
2022-05-11 10:10:31 +02:00
whonet_bugfixes.R
(v1.7.1.9050) fix for as.mo
2021-10-05 14:00:35 +02:00