P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-09-15 23:41:53 +02:00
Code Releases Activity
Files
49e440d037dcd8ec05fb749c5a1262941b6e8700
AMR/man
T
History
dr. M.S. (Matthijs) Berends 49e440d037 fix parallel
2026-04-30 00:41:17 +02:00
..
ab_from_text.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
ab_property.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
add_custom_antimicrobials.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
add_custom_microorganisms.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
age_groups.Rd
(v3.0.0.9011) allow names for age_groups()
2025-07-17 19:32:46 +02:00
age.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
amr_course.Rd
(v3.0.1.9034) Add amr_course()
2026-03-11 16:07:31 +01:00
AMR-deprecated.Rd
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
AMR-options.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
amr-tidymodels.Rd
fix parallel
2026-04-30 00:41:17 +02:00
AMR.Rd
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
antibiogram.Rd
fix parallel
2026-04-30 00:41:17 +02:00
antimicrobial_selectors.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
antimicrobials.Rd
(v3.0.1.9033) add ionophores(), clorobiocin, aminocoumarins group
2026-03-09 11:57:36 +01:00
as.ab.Rd
(v3.0.1.9026) fix ab_group(NA)
2026-03-06 12:41:27 +01:00
as.av.Rd
(v3.0.1.9018) fixes #249
2026-01-16 10:57:03 +01:00
as.disk.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
as.mic.Rd
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
as.mo.Rd
(v3.0.1.9027) Fixes #252 and add documentation update regarding #253
2026-03-06 13:10:33 +01:00
as.sir.Rd
fix parallel
2026-04-30 00:41:17 +02:00
atc_online.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
av_from_text.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
av_property.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
availability.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
bug_drug_combinations.Rd
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
2026-02-08 23:15:40 +01:00
clinical_breakpoints.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
count.Rd
(v3.0.1.9021) add guideline to resistance() and susceptibility()
2026-02-12 20:34:06 +01:00
custom_eucast_rules.Rd
fix parallel
2026-04-30 00:41:17 +02:00
custom_mdro_guideline.Rd
fix parallel
2026-04-30 00:41:17 +02:00
dosage.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
esbl_isolates.Rd
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
example_isolates_unclean.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
example_isolates.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
export_ncbi_biosample.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
first_isolate.Rd
(v3.0.0.9034) fix MycoBank synonyms
2025-09-18 13:58:34 +01:00
g.test.Rd
fix parallel
2026-04-30 00:41:17 +02:00
get_episode.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
ggplot_pca.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
ggplot_sir.Rd
(v3.0.0.9015) plotting fix
2025-07-19 14:06:36 +02:00
guess_ab_col.Rd
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
interpretive_rules.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
intrinsic_resistant.Rd
(v3.0.1.9048) fix #275
2026-04-22 08:16:44 +02:00
italicise_taxonomy.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
join.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
key_antimicrobials.Rd
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
kurtosis.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
like.Rd
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
mdro.Rd
(v3.0.1.9048) fix #275
2026-04-22 08:16:44 +02:00
mean_amr_distance.Rd
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
microorganisms.codes.Rd
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
microorganisms.groups.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
microorganisms.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
mo_matching_score.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
mo_property.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
mo_source.Rd
(v3.0.1.9037) improve cli messages
2026-03-22 20:44:37 +01:00
pca.Rd
fix parallel
2026-04-30 00:41:17 +02:00
plot.Rd
(v3.0.1.9047) fix #272
2026-04-21 22:11:40 +02:00
proportion.Rd
(v3.0.1.9021) add guideline to resistance() and susceptibility()
2026-02-12 20:34:06 +01:00
random.Rd
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
resistance_predict.Rd
(v3.0.1.9018) fixes #249
2026-01-16 10:57:03 +01:00
skewness.Rd
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
top_n_microorganisms.Rd
Add add_if_missing parameter to control NA handling in interpretive rules (#264)
2026-04-21 21:53:43 +02:00
translate.Rd
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
WHOCC.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
WHONET.Rd
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00