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2.3 KiB
2.3 KiB
0.2.0
New
- Full support for Windows, Linux and macOS
- Function
guess_bactidto determine the ID of a microorganism based on genus/species or known abbreviations like MRSA - Functions
clipboard_importandclipboard_exportas helper functions to quickly copy and paste from/to software like Excel and SPSS - Function
MDROto determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via this link. FunctionsBRMOandMRGNare wrappers for Dutch and German guidelines, respectively - Function
freqto create frequency tables, with additional info in a header - New algorithm to determine weighted isolates, can now be
"points"or"keyantibiotics", see?first_isolate - New print format for tibbles and data.tables
Changed
- Support for older R versions, only R 3.1.0 and later is needed
- Renamed dataset
ablisttoantibiotics - Renamed dataset
bactlisttomicroorganisms - Added more microorganisms to
bactlist - Added analysis examples on help page of dataset
septic_patients - Added support for character vector in
joinfunctions - Added warnings when a join results in more rows after than before the join
- Altered
%like%to make it case insensitive - For parameters of functions
first_isolateandEUCAST_rulesthe column names are now case-insensitive - Functions
as.rsiandas.micnow add the package name and version as attribute
Other
- Expanded README.md with more examples
- Added ORC IDs of authors to DESCRIPTION file
- Added unit testing with the
testthatpackage - Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
- Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
0.1.1
EUCAST_rulesapplies for amoxicillin even if ampicillin is missing- Edited column names to comply with GLIMS, the laboratory information system
- Added more valid MIC values
- Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
- Added barplots for
rsiandmicclasses
0.1.0
- First submission to CRAN.