AMR/R
dr. M.S. (Matthijs) Berends 6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
..
aa_globals.R updated taxonomy 2022-12-12 00:14:56 +01:00
aa_helper_functions.R revised `as.rsi()`, fix for `mdro()` 2022-11-24 20:29:00 +01:00
aa_helper_pm_functions.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
ab.R expert rules 12.0 2022-11-14 15:20:39 +01:00
ab_from_text.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
ab_property.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
ab_selectors.R expert rules 12.0 2022-11-14 15:20:39 +01:00
add_custom_antimicrobials.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
age.R documentation fix 2022-11-05 08:18:06 +01:00
amr.R Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
atc_online.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
av.R expert rules 12.0 2022-11-14 15:20:39 +01:00
av_from_text.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
av_property.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
availability.R Fixes for Salmonella 2022-12-17 14:31:33 +01:00
bug_drug_combinations.R new rsi_translation 2022-10-22 22:00:15 +02:00
count.R add confidence intervals (fixed #70), remove `combine_IR` 2022-10-20 16:08:01 +02:00
custom_eucast_rules.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
data.R incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
deprecated.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
disk.R add column to `as.mic()` and `as.disk()` warnings 2022-11-28 19:39:52 +01:00
episode.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
eucast_rules.R Fixes for Salmonella 2022-12-17 14:31:33 +01:00
first_isolate.R expert rules 12.0 2022-11-14 15:20:39 +01:00
g.test.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
ggplot_pca.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
ggplot_rsi.R add confidence intervals (fixed #70), remove `combine_IR` 2022-10-20 16:08:01 +02:00
guess_ab_col.R expert rules 12.0 2022-11-14 15:20:39 +01:00
italicise_taxonomy.R move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
join_microorganisms.R updated taxonomy 2022-12-12 00:14:56 +01:00
key_antimicrobials.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
kurtosis.R expert rules 12.0 2022-11-14 15:20:39 +01:00
like.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mdro.R incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
mean_amr_distance.R mean AMR distance 2022-10-21 16:02:14 +02:00
mic.R add column to `as.mic()` and `as.disk()` warnings 2022-11-28 19:39:52 +01:00
mo.R unit tests 2022-12-20 22:18:50 +01:00
mo_matching_score.R update mo algorithm 2022-12-20 16:14:04 +01:00
mo_property.R unit tests 2022-12-20 22:18:50 +01:00
mo_source.R remove warnings from unit tests 2022-10-19 11:47:57 +02:00
pca.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
plot.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
proportion.R completely updated `antibiotics` 2022-10-30 14:31:45 +01:00
random.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
resistance_predict.R expert rules 12.0 2022-11-14 15:20:39 +01:00
rsi.R revised `as.rsi()`, fix for `mdro()` 2022-11-24 20:29:00 +01:00
rsi_calc.R revised `as.rsi()`, fix for `mdro()` 2022-11-24 20:29:00 +01:00
rsi_df.R add confidence intervals (fixed #70), remove `combine_IR` 2022-10-20 16:08:01 +02:00
skewness.R expert rules 12.0 2022-11-14 15:20:39 +01:00
sysdata.rda unit tests 2022-12-20 22:18:50 +01:00
translate.R website update 2022-12-11 11:44:29 +01:00
vctrs.R cleanup and new intro logo 2022-11-13 13:44:25 +01:00
whocc.R website update 2022-12-11 11:44:29 +01:00
zzz.R Fixes for Salmonella 2022-12-17 14:31:33 +01:00