P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-04-19 17:13:55 +02:00
Code Releases Activity
AMR/man
History
dr. M.S. (Matthijs) Berends ff03bb6471 (v2.1.1.9065) unit tests 2
2024-07-16 15:58:18 +02:00
..
figures
website update
2022-12-11 11:44:29 +01:00
ab_from_text.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
ab_property.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
add_custom_antimicrobials.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
add_custom_microorganisms.Rd
unit testing R4.3
2023-05-26 20:37:00 +02:00
age_groups.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
age.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
AMR-options.Rd
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
AMR.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
antibiogram.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
antibiotic_class_selectors.Rd
(v2.1.1.9052) unit test fix
2024-06-16 20:53:50 +02:00
antibiotics.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
as.ab.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
as.av.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
as.disk.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mic.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
as.mo.Rd
(v2.1.1.9065) unit tests 2
2024-07-16 15:58:18 +02:00
as.sir.Rd
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
atc_online.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
av_from_text.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
av_property.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
availability.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
bug_drug_combinations.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
clinical_breakpoints.Rd
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
count.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
custom_eucast_rules.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
dosage.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
eucast_rules.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
example_isolates_unclean.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
example_isolates.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
export_ncbi_biosample.Rd
(v2.1.1.9043) fix sir translation with as.double
2024-06-10 10:34:45 +02:00
first_isolate.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
g.test.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
get_episode.Rd
update NEWS
2023-03-11 14:43:31 +01:00
ggplot_pca.Rd
Remove RSI from package, add extra MIC scale functions
2023-12-03 11:34:48 +01:00
ggplot_sir.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
guess_ab_col.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
intrinsic_resistant.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
italicise_taxonomy.Rd
Added support for 'html' in italicize_taxonomy() (#134)
2024-02-13 13:47:07 +01:00
join.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
kurtosis.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
like.Rd
fix documentation
2023-03-16 08:55:37 +01:00
mdro.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
mean_amr_distance.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
microorganisms.codes.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
microorganisms.groups.Rd
Added C. freundii complex and Y. pseudotuberculosis complex
2023-07-14 10:49:06 +02:00
microorganisms.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mo_matching_score.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mo_property.Rd
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
mo_source.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
pca.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
plot.Rd
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
proportion.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
random.Rd
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
resistance_predict.Rd
breakpoints UTI interpretation fix
2023-07-10 13:41:52 +02:00
skewness.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
translate.Rd
prepare for CRAN
2023-10-20 14:51:48 +02:00
WHOCC.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
WHONET.Rd
fix for antibiogram(), transform WHONET data set to sir
2023-02-22 15:40:05 +01:00