mirror of https://github.com/msberends/AMR.git
2.3 KiB
2.3 KiB
0.2.0
New
- Full support for Windows, Linux and macOS
- Function
guess_bactid
to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA - Functions
clipboard_import
andclipboard_export
as helper functions to quickly copy and paste from/to software like Excel and SPSS - Function
MDRO
to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via this link. FunctionsBRMO
andMRGN
are wrappers for Dutch and German guidelines, respectively - Function
freq
to create frequency tables, with additional info in a header - New algorithm to determine weighted isolates, can now be
"points"
or"keyantibiotics"
, see?first_isolate
- New print format for tibbles and data.tables
Changed
- Support for old R versions, only R-3.0.0 (April 2013) or later is needed
- Renamed dataset
ablist
toantibiotics
- Renamed dataset
bactlist
tomicroorganisms
- Added more microorganisms to
bactlist
- Added analysis examples on help page of dataset
septic_patients
- Added support for character vector in
join
functions - Added warnings when a join results in more rows after than before the join
- Altered
%like%
to make it case insensitive - For parameters of functions
first_isolate
andEUCAST_rules
the column names are now case-insensitive - Functions
as.rsi
andas.mic
now add the package name and version as attribute
Other
- Expanded README.md with more examples
- Added ORC IDs of authors to DESCRIPTION file
- Added unit testing with the
testthat
package - Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
- Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
0.1.1
EUCAST_rules
applies for amoxicillin even if ampicillin is missing- Edited column names to comply with GLIMS, the laboratory information system
- Added more valid MIC values
- Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
- Added barplots for
rsi
andmic
classes
0.1.0
- First submission to CRAN.