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AMR/data-raw/interpretive_rules.tsv
Matthijs Berends 24f24ecaf8 Generalise interpretive rules for multi-guideline support (#268) (#283) 
* Generalise interpretive rules for multi-guideline support (#268)

- Rename data-raw/eucast_rules.tsv → interpretive_rules.tsv; add rule.provider
  column (value: "EUCAST") to distinguish future CLSI rows
- Rename EUCAST_RULES_DF → INTERPRETIVE_RULES_DF in _pre_commit_checks.R;
  filter by rule.provider == guideline when applying rules in interpretive_rules()
- Rename custom_eucast_rules() → custom_interpretive_rules() with new S3 class
  "custom_interpretive_rules"; old function becomes a deprecated wrapper in
  zz_deprecated.R; backward-compat S3 dispatch shims added for old class
- Remove stop_if(guideline == "CLSI", ...) so clsi_rules() no longer errors
- Add .onLoad shim in zzz.R to create INTERPRETIVE_RULES_DF from EUCAST_RULES_DF
  for transitional compatibility until sysdata.rda is regenerated

https://claude.ai/code/session_01D46BTsfJSPo3HnLWp3PRkP

* Fix namespace load failure: remove assignInNamespace from .onLoad (#268)

assignInNamespace cannot add NEW bindings to a locked package namespace
(R locks namespace bindings before .onLoad runs). Replace the .onLoad
shim with a runtime fallback inside interpretive_rules(): if
INTERPRETIVE_RULES_DF is absent (pre-regeneration sysdata.rda), derive
it from EUCAST_RULES_DF by adding the rule.provider column. This also
fixes the screening_abx line to reuse the already-resolved
interpretive_rules_df_total instead of a bare INTERPRETIVE_RULES_DF
reference.

https://claude.ai/code/session_01D46BTsfJSPo3HnLWp3PRkP

* fixes

* fixes

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-05-01 18:38:51 +01:00

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# -------------------------------------------------------------------------------------------------------------------------------
# For editing this interpretive rules reference file, these values can all be used for targeting antibiotics:
# aminoglycosides, aminopenicillins, antifungals, antimycobacterials, betalactams, betalactams_with_inhibitor, carbapenems, cephalosporins, cephalosporins_1st, cephalosporins_2nd, cephalosporins_3rd, cephalosporins_4th, cephalosporins_5th, cephalosporins_except_CAZ, fluoroquinolones, glycopeptides, glycopeptides_except_lipo, lincosamides, lipoglycopeptides, macrolides, oxazolidinones, penicillins, polymyxins, quinolones, streptogramins, tetracyclines, tetracyclines_except_TGC, trimethoprims, ureidopenicillins
# and all separate EARS-Net letter codes such as AMC. They can be separated by comma: 'AMC, fluoroquinolones'.
# The 'if_mo_property' column can be any column name from the AMR::microorganisms data set, or 'genus_species' or 'gramstain'. If 'this_value' exists in AMR::microorganisms.groups$mo_group_name it will be expanded in interpretive_rules() to all relevant species occuring in microorganisms.groups$mo_name before further processing of the line in this file.
# The like.is.one_of column must be 'like' or 'is' or 'one_of' ('like' will read the 'this_value' column as regular expression)
# The EUCAST guideline contains references to the 'Burkholderia cepacia complex'. All species in this group are noted on the 'B.cepacia' sheet of the EUCAST Clinical Breakpoint v.10.0 Excel file of 2020 and later
# >>>>> IF YOU WANT TO IMPORT THIS FILE INTO YOUR OWN SOFTWARE, HAVE THE FIRST 9 LINES SKIPPED <<<<<
# -------------------------------------------------------------------------------------------------------------------------------
rule.provider reference.rule_group reference.version reference.rule if_mo_property like.is.one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value note
EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S
EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I
EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R
EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP S LVX S
EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP I LVX I
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus sanguinicola CIP R LVX R
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR S fluoroquinolones S
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR I fluoroquinolones I
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR R fluoroquinolones R
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TZP, TIC S
EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TZP, TIC I
EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TZP, TIC R
EUCAST Breakpoints 10 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN S AMP, AMX, PIP, TZP, TIC S
EUCAST Breakpoints 10 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN I AMP, AMX, PIP, TZP, TIC I
EUCAST Breakpoints 10 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN R AMP, AMX, PIP, TZP, TIC R
EUCAST Breakpoints 10 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY S DOX S
EUCAST Breakpoints 10 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY I DOX I
EUCAST Breakpoints 10 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY R DOX R
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli ERY S AZM, CLR S
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli ERY I AZM, CLR I
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli ERY R AZM, CLR R
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli TCY S DOX S
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli TCY I DOX I
EUCAST Breakpoints 10 Campylobacter coli genus_species is Campylobacter coli TCY R DOX R
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 10 Campylobacter jejuni genus_species is Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 10 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 10 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 10 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus NOR S CIP, LVX S
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus NOR I CIP, LVX I
EUCAST Breakpoints 10 Enterococcus genus is Enterococcus NOR R CIP, LVX R
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMP S AMX, PIP S
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMP I AMX, PIP I
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMP R AMX, PIP R
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S TZP S
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I TZP I
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R TZP R
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae NAL S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 10 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae TCY I DOX I
EUCAST Breakpoints 10 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus PEN, FOX S betalactams_with_inhibitor S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus PEN, FOX R, S OXA, FLC S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus FOX R betalactams R
EUCAST Breakpoints 10 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus FOX S carbapenems, cephalosporins_except_CAZ S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus FOX I carbapenems, cephalosporins_except_CAZ I
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus FOX R carbapenems, cephalosporins_except_CAZ R
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus ERY I AZM, CLR, RXT I
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus ERY R AZM, CLR, RXT R
EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus TCY S DOX, MNO S
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC S
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC I
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC R
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S MFX S
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S LVX I
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY I AZM, CLR, RXT I
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 10 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY S DOX, MNO S
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S MFX S
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S LVX I
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY I AZM, CLR, RXT I
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 10 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY S DOX, MNO S
EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S
EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I
EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R
EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP S LVX S
EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP I LVX I
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus sanguinicola CIP R LVX R
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR S fluoroquinolones S
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR I fluoroquinolones I
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR R fluoroquinolones R
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TIC S
EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TIC I
EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TIC R
EUCAST Breakpoints 11 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN S AMP, AMX, PIP, TIC S
EUCAST Breakpoints 11 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN I AMP, AMX, PIP, TIC I
EUCAST Breakpoints 11 Anaerobic Gram-positives genus one_of Actinomyces, Bifidobacterium, Clostridium, Clostridioides, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN R AMP, AMX, PIP, TIC R
EUCAST Breakpoints 11 Bacillus genus is Bacillus NOR S fluoroquinolones S added in 11
EUCAST Breakpoints 11 Bacillus genus is Bacillus NOR I fluoroquinolones I added in 11
EUCAST Breakpoints 11 Bacillus genus is Bacillus NOR R fluoroquinolones R added in 11
EUCAST Breakpoints 11 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY S DOX S
EUCAST Breakpoints 11 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY I DOX I
EUCAST Breakpoints 11 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY R DOX R
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli ERY S AZM, CLR S
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli ERY I AZM, CLR I
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli ERY R AZM, CLR R
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli TCY S DOX S
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli TCY I DOX I
EUCAST Breakpoints 11 Campylobacter coli genus_species is Campylobacter coli TCY R DOX R
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 11 Campylobacter jejuni genus_species is Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 11 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 11 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 11 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus NOR S CIP, LVX S
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus NOR I CIP, LVX I
EUCAST Breakpoints 11 Enterococcus genus is Enterococcus NOR R CIP, LVX R
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMP S AMX, PIP S
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMP I AMX, PIP I
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMP R AMX, PIP R
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S TZP S
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I TZP I
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R TZP R
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae NAL S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 11 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae TCY I DOX I
EUCAST Breakpoints 11 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus PEN, FOX S betalactams_with_inhibitor S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus PEN, FOX R, S OXA, FLC S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus FOX R betalactams R
EUCAST Breakpoints 11 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus FOX S carbapenems, cephalosporins_except_CAZ S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus FOX I carbapenems, cephalosporins_except_CAZ I
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus FOX R carbapenems, cephalosporins_except_CAZ R
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus ERY I AZM, CLR, RXT I
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus ERY R AZM, CLR, RXT R
EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus TCY S DOX, MNO S
EUCAST Breakpoints 11 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CTX, CRO I
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC S
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC I
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC R
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S MFX S
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S LVX I
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY I AZM, CLR, RXT I
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 11 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY S DOX, MNO S
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S MFX S
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S LVX I
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY I AZM, CLR, RXT I
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 11 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY S DOX, MNO S
EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ PEN S AMP, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP S AMX, AMC, PIP, TZP S
EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP I AMX, AMC, PIP, TZP I
EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP R AMX, AMC, PIP, TZP R
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I
EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R
EUCAST Breakpoints 12 Bacillus genus is Bacillus NOR-S S CIP, LVX I
EUCAST Breakpoints 12 Bacillus genus is Bacillus NOR-S R CIP, LVX R
EUCAST Breakpoints 12 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I
EUCAST Breakpoints 12 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S R DOX R
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 12 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 12 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 12 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 12 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 12 Enterobacterales (Order) order is Enterobacterales LEX S CZO I
EUCAST Breakpoints 12 Enterobacterales (Order) order is Enterobacterales CFR S CZO I
EUCAST Breakpoints 12 Enterobacterales (Order) genus is Salmonella PEF-S S CIP S
EUCAST Breakpoints 12 Enterobacterales (Order) genus is Salmonella PEF-S I CIP I
EUCAST Breakpoints 12 Enterobacterales (Order) genus is Salmonella PEF-S R CIP R
EUCAST Breakpoints 12 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY S DOX S
EUCAST Breakpoints 12 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY I DOX I
EUCAST Breakpoints 12 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY R DOX R
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus AMP I AMP, SAM, AMX, AMC, PIP, TZP I
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus AMP R AMP, SAM, AMX, AMC, PIP, TZP R
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus NOR-S S CIP, LVX S
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus NOR-S I CIP, LVX I
EUCAST Breakpoints 12 Enterococcus genus is Enterococcus NOR-S R CIP, LVX R
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S SAM S
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I SAM I
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R SAM R
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S I CIP, LVX, MFX, OFX I
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 12 Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 12 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 12 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY R DOX, MNO R
EUCAST Breakpoints 12 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R
EUCAST Breakpoints 12 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S
EUCAST Breakpoints 12 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I
EUCAST Breakpoints 12 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I
EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R
EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S
EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CPT S
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S S BPR S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S S carbapenems S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S I carbapenems I
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus FOX-S R carbapenems R
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 12 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus NOR-S S MFX S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus NOR-S S CIP, LVX I
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus VAN S DAL, ORI S
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S, VAN R, S TLV S MRSA isolates are in this file safely denoted as FOX resistant
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 12 Staphylococcus genus is Staphylococcus TCY-S S DOX, MNO S
EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CTX, CRO I
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S
EUCAST Breakpoints 12 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S CEC I
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S CEC I
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN R PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S
EUCAST Breakpoints 12 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio PEF-S S CIP, LVX S
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio PEF-S I CIP, LVX I
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio PEF-S R CIP, LVX R
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio ERY S AZM S
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio ERY I AZM I
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio ERY R AZM R
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio TCY-S S DOX S
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio TCY-S I DOX I
EUCAST Breakpoints 12 Vibrio spp. genus is Vibrio TCY-S R DOX R
EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
EUCAST Breakpoints 13 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CTX, CRO I
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I
EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R
EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella AMP S AMX S
EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella AMP I AMX I
EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella AMP R AMX R
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP S AMX S
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP I AMX I
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP R AMX R
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Clostridium perfringens AMP S AMX S
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Clostridium perfringens AMP I AMX I
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Clostridium perfringens AMP R AMX R
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes AMP S AMX S
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes AMP I AMX I
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes AMP R AMX R
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes CTX S CRO S
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes CTX I CRO I
EUCAST Breakpoints 14 Anaerobic bacteria genus_species is Cutibacterium acnes CTX R CRO R
EUCAST Breakpoints 14 Bacillus genus is Bacillus NOR-S S CIP, LVX I
EUCAST Breakpoints 14 Bacillus genus is Bacillus NOR-S R CIP, LVX R
EUCAST Breakpoints 14 Bacillus anthracis genus_species is Bacillus anthracis PEN I AMX S
EUCAST Breakpoints 14 Bacillus anthracis genus_species is Bacillus anthracis PEN R AMX R
EUCAST Breakpoints 14 Bacillus anthracis genus_species is Bacillus anthracis TCY-S S DOX S
EUCAST Breakpoints 14 Bacillus anthracis genus_species is Bacillus anthracis TCY-S R DOX R
EUCAST Breakpoints 14 Brucella melitensis genus_species is Brucella melitensis TCY-S S DOX S
EUCAST Breakpoints 14 Brucella melitensis genus_species is Brucella melitensis TCY-S R DOX R
EUCAST Breakpoints 14 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I
EUCAST Breakpoints 14 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S R DOX R
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 14 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S
EUCAST Breakpoints 14 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R
EUCAST Breakpoints 14 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 14 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 14 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 14 Enterobacterales (Order) order is Enterobacterales LEX S CZO I
EUCAST Breakpoints 14 Enterobacterales (Order) order is Enterobacterales CFR S CZO I
EUCAST Breakpoints 14 Enterobacterales (Order) genus is Salmonella PEF-S S CIP S
EUCAST Breakpoints 14 Enterobacterales (Order) genus is Salmonella PEF-S I CIP I
EUCAST Breakpoints 14 Enterobacterales (Order) genus is Salmonella PEF-S R CIP R
EUCAST Breakpoints 14 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY S DOX S
EUCAST Breakpoints 14 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY I DOX I
EUCAST Breakpoints 14 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY R DOX R
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus AMP I AMP, SAM, AMX, AMC, PIP, TZP I
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus AMP R AMP, SAM, AMX, AMC, PIP, TZP R
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus NOR-S S CIP, LVX S
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus NOR-S I CIP, LVX I
EUCAST Breakpoints 14 Enterococcus genus is Enterococcus NOR-S R CIP, LVX R
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S SAM S
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I SAM I
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R SAM R
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S I CIP, LVX, MFX, OFX I
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 14 Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 14 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 14 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY R DOX, MNO R
EUCAST Breakpoints 14 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R
EUCAST Breakpoints 14 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S
EUCAST Breakpoints 14 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I
EUCAST Breakpoints 14 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I
EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R
EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S
EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CPT S
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S S BPR S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S S carbapenems S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S I carbapenems I
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus FOX-S R carbapenems R
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 14 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus NOR-S S MFX S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus NOR-S S CIP, LVX I
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus coagulase-negative VAN, TEC S, S DAL S
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus VAN S DAL, ORI S
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S, VAN R, S TLV S MRSA isolates are in this file safely denoted as FOX resistant
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 14 Staphylococcus genus is Staphylococcus TCY-S S DOX, MNO S
EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CTX, CRO I
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S
EUCAST Breakpoints 14 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S CEC I
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S CEC I
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN R PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S
EUCAST Breakpoints 14 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio PEF-S S CIP, LVX S
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio PEF-S I CIP, LVX I
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio PEF-S R CIP, LVX R
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio ERY S AZM S
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio ERY I AZM I
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio ERY R AZM R
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio TCY-S S DOX S
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio TCY-S I DOX I
EUCAST Breakpoints 14 Vibrio spp. genus is Vibrio TCY-S R DOX R
EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S will be expanded in eucast_rules()
EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R will be expanded in eucast_rules()
EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S will be expanded in eucast_rules()
EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I will be expanded in eucast_rules()
EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R will be expanded in eucast_rules()
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I
EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R
EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella AMP S AMX S
EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella AMP I AMX I
EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella AMP R AMX R
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP S AMX S
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP I AMX I
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP R AMX R
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Clostridium perfringens AMP S AMX S
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Clostridium perfringens AMP I AMX I
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Clostridium perfringens AMP R AMX R
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes AMP S AMX S
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes AMP I AMX I
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes AMP R AMX R
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes CTX S CRO S
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes CTX I CRO I
EUCAST Breakpoints 15 Anaerobic bacteria genus_species is Cutibacterium acnes CTX R CRO R
EUCAST Breakpoints 15 Bacillus genus is Bacillus NOR-S S CIP, LVX I
EUCAST Breakpoints 15 Bacillus genus is Bacillus NOR-S R CIP, LVX R
EUCAST Breakpoints 15 Bacillus anthracis genus_species is Bacillus anthracis PEN I AMX S
EUCAST Breakpoints 15 Bacillus anthracis genus_species is Bacillus anthracis PEN R AMX R
EUCAST Breakpoints 15 Bacillus anthracis genus_species is Bacillus anthracis TCY-S S DOX S
EUCAST Breakpoints 15 Bacillus anthracis genus_species is Bacillus anthracis TCY-S R DOX R
EUCAST Breakpoints 15 Brucella melitensis genus_species is Brucella melitensis TCY-S S DOX S
EUCAST Breakpoints 15 Brucella melitensis genus_species is Brucella melitensis TCY-S R DOX R
EUCAST Breakpoints 15 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I
EUCAST Breakpoints 15 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S R DOX R
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 15 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S
EUCAST Breakpoints 15 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R
EUCAST Breakpoints 15 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 15 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 15 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 15 Enterobacterales (Order) order is Enterobacterales LEX S CZO I
EUCAST Breakpoints 15 Enterobacterales (Order) order is Enterobacterales CFR S CZO I
EUCAST Breakpoints 15 Enterobacterales (Order) genus is Salmonella PEF-S S CIP S
EUCAST Breakpoints 15 Enterobacterales (Order) genus is Salmonella PEF-S I CIP I
EUCAST Breakpoints 15 Enterobacterales (Order) genus is Salmonella PEF-S R CIP R
EUCAST Breakpoints 15 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY S DOX S
EUCAST Breakpoints 15 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY I DOX I
EUCAST Breakpoints 15 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY R DOX R
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus AMP S AMP, SAM, AMX S
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus AMP I AMP, SAM, AMX I
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus AMP R AMP, SAM, AMX R
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus AMP R AMX, AMC R
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus NOR-S S CIP, LVX S
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus NOR-S I CIP, LVX I
EUCAST Breakpoints 15 Enterococcus genus is Enterococcus NOR-S R CIP, LVX R
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S SAM S
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I SAM I
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R SAM R
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 15 Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 15 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 15 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY R DOX, MNO R
EUCAST Breakpoints 15 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R
EUCAST Breakpoints 15 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S
EUCAST Breakpoints 15 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I
EUCAST Breakpoints 15 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I
EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R
EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S
EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CPT S
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus FOX-S S BPR S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S S carbapenems S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S I carbapenems I
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus FOX-S R carbapenems R
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 15 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus NOR-S S MFX S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus NOR-S S CIP, LVX I
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 15 Staphylococcus genus is Staphylococcus TCY-S S DOX, MNO S
EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CTX, CRO I
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S
EUCAST Breakpoints 15 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S CEC I
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S CEC I
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN R PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S
EUCAST Breakpoints 15 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio PEF-S S CIP, LVX S
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio PEF-S I CIP, LVX I
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio PEF-S R CIP, LVX R
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio ERY S AZM S
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio ERY I AZM I
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio ERY R AZM R
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio TCY-S S DOX S
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio TCY-S I DOX I
EUCAST Breakpoints 15 Vibrio spp. genus is Vibrio TCY-S R DOX R
EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I
EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R
EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella AMP S AMX S
EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella AMP I AMX I
EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella AMP R AMX R
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP S AMX S
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP I AMX I
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP R AMX R
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Clostridium perfringens AMP S AMX S
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Clostridium perfringens AMP I AMX I
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Clostridium perfringens AMP R AMX R
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes AMP S AMX S
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes AMP I AMX I
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes AMP R AMX R
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes CTX S CRO S
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes CTX I CRO I
EUCAST Breakpoints 16 Anaerobic bacteria genus_species is Cutibacterium acnes CTX R CRO R
EUCAST Breakpoints 16 Bacillus genus is Bacillus NOR-S S CIP, LVX I
EUCAST Breakpoints 16 Bacillus genus is Bacillus NOR-S R CIP, LVX R
EUCAST Breakpoints 16 Bacillus anthracis genus_species is Bacillus anthracis PEN I AMX S
EUCAST Breakpoints 16 Bacillus anthracis genus_species is Bacillus anthracis PEN R AMX R
EUCAST Breakpoints 16 Bacillus anthracis genus_species is Bacillus anthracis TCY-S S DOX S
EUCAST Breakpoints 16 Bacillus anthracis genus_species is Bacillus anthracis TCY-S R DOX R
EUCAST Breakpoints 16 Brucella melitensis genus_species is Brucella melitensis TCY-S S DOX S
EUCAST Breakpoints 16 Brucella melitensis genus_species is Brucella melitensis TCY-S R DOX R
EUCAST Breakpoints 16 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I
EUCAST Breakpoints 16 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S R DOX R
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 16 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S
EUCAST Breakpoints 16 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R
EUCAST Breakpoints 16 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 16 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 16 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 16 Enterobacterales (Order) order is Enterobacterales LEX S CZO I
EUCAST Breakpoints 16 Enterobacterales (Order) order is Enterobacterales CFR S CZO I
EUCAST Breakpoints 16 Enterobacterales (Order) genus is Salmonella PEF-S S CIP S
EUCAST Breakpoints 16 Enterobacterales (Order) genus is Salmonella PEF-S I CIP I
EUCAST Breakpoints 16 Enterobacterales (Order) genus is Salmonella PEF-S R CIP R
EUCAST Breakpoints 16 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY S DOX S
EUCAST Breakpoints 16 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY I DOX I
EUCAST Breakpoints 16 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY R DOX R
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus AMP S AMP, SAM, AMX S
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus AMP I AMP, SAM, AMX I
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus AMP R AMP, SAM, AMX R
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus AMP R AMX, AMC R
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus NOR-S S CIP, LVX S
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus NOR-S I CIP, LVX I
EUCAST Breakpoints 16 Enterococcus genus is Enterococcus NOR-S R CIP, LVX R
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S SAM S
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I SAM I
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R SAM R
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 16 Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 16 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 16 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY R DOX, MNO R
EUCAST Breakpoints 16 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R
EUCAST Breakpoints 16 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S
EUCAST Breakpoints 16 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I
EUCAST Breakpoints 16 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I
EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R
EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S
EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S S CZO, FEP, CTX, CRO, CXM I
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("CZO", "FEP", "CTX", "CRO", "CXM", "cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus OXA-S S CZO, FEP, CTX, CRO, CXM I
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("CZO", "FEP", "CTX", "CRO", "CXM", "cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTA, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FEP, FOV, FOX, FPE, FPT, FPZ, FTA, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "cefiderocol", "ceftolozan/tazobactam"))])) |> toString()
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CPT S
EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus FOX-S S BPR S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S S carbapenems S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S I carbapenems I
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus FOX-S R carbapenems R
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 16 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus NOR-S S MFX S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus NOR-S S CIP, LVX I
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 16 Staphylococcus genus is Staphylococcus TCY-S S DOX, MNO S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S
EUCAST Breakpoints 16 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S CEC I
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S CEC I
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN R PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S
EUCAST Breakpoints 16 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio PEF-S S CIP, LVX S
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio PEF-S I CIP, LVX I
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio PEF-S R CIP, LVX R
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio ERY S AZM S
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio ERY I AZM I
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio ERY R AZM R
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio TCY-S S DOX S
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio TCY-S I DOX I
EUCAST Breakpoints 16 Vibrio spp. genus is Vibrio TCY-S R DOX R
EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R MO group name will be expanded in eucast_rules()
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I
EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R
EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella AMP S AMX S
EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella AMP I AMX I
EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella AMP R AMX R
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP S AMX S
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP I AMX I
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP R AMX R
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Clostridium perfringens AMP S AMX S
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Clostridium perfringens AMP I AMX I
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Clostridium perfringens AMP R AMX R
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes AMP S AMX S
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes AMP I AMX I
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes AMP R AMX R
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes CTX S CRO S
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes CTX I CRO I
EUCAST Breakpoints 13.1 Anaerobic bacteria genus_species is Cutibacterium acnes CTX R CRO R
EUCAST Breakpoints 13.1 Bacillus genus is Bacillus NOR-S S CIP, LVX I
EUCAST Breakpoints 13.1 Bacillus genus is Bacillus NOR-S R CIP, LVX R
EUCAST Breakpoints 13.1 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I
EUCAST Breakpoints 13.1 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S R DOX R
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I
EUCAST Breakpoints 13.1 Campylobacter coli/jejuni genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN S CTX S
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY I DOX I
EUCAST Breakpoints 13.1 Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R
EUCAST Breakpoints 13.1 Enterobacterales (Order) order is Enterobacterales AMP S AMX S
EUCAST Breakpoints 13.1 Enterobacterales (Order) order is Enterobacterales AMP I AMX I
EUCAST Breakpoints 13.1 Enterobacterales (Order) order is Enterobacterales AMP R AMX R
EUCAST Breakpoints 13.1 Enterobacterales (Order) order is Enterobacterales LEX S CZO I
EUCAST Breakpoints 13.1 Enterobacterales (Order) order is Enterobacterales CFR S CZO I
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus is Salmonella PEF-S S CIP S
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus is Salmonella PEF-S I CIP I
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus is Salmonella PEF-S R CIP R
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY S DOX S
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY I DOX I
EUCAST Breakpoints 13.1 Enterobacterales (Order) genus_species is Yersinia enterocolitica TCY R DOX R
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus AMP I AMP, SAM, AMX, AMC, PIP, TZP I
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus AMP R AMP, SAM, AMX, AMC, PIP, TZP R
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus NOR-S S CIP, LVX S
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus NOR-S I CIP, LVX I
EUCAST Breakpoints 13.1 Enterococcus genus is Enterococcus NOR-S R CIP, LVX R
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae AMC S SAM S
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae AMC I SAM I
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae AMC R SAM R
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S I CIP, LVX, MFX, OFX I
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Breakpoints 13.1 Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae PEN S AMP, AMX S
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae PEN I AMP, AMX I
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae PEN R AMP, AMX R
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae ERY S AZM, CLR S
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae ERY I AZM, CLR I
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae ERY R AZM, CLR R
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae TCY S DOX S
EUCAST Breakpoints 13.1 Kingella kingae genus_species is Kingella kingae TCY R DOX R
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC S TZP S
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC I TZP I
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis AMC R TZP R
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S
EUCAST Breakpoints 13.1 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY R DOX, MNO R
EUCAST Breakpoints 13.1 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R
EUCAST Breakpoints 13.1 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S
EUCAST Breakpoints 13.1 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I
EUCAST Breakpoints 13.1 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I
EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R
EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S
EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I
EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R
EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S
EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus FOX-S S CPT S
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus FOX-S S BPR S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S S carbapenems S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S I carbapenems I
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus FOX-S R carbapenems R
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 13.1 Staphylococcus genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus NOR-S S MFX S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus NOR-S S CIP, LVX I
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus VAN S DAL, ORI S
EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus FOX-S, VAN R, S TLV S MRSA isolates are in this file safely denoted as FOX resistant
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus ERY S AZM, CLR, RXT S
EUCAST Breakpoints 13.1 Staphylococcus genus is Staphylococcus TCY-S S DOX, MNO S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S
EUCAST Breakpoints 13.1 Streptococcus groups A, B, C, G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S S CEC I
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN S CEC I
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae PEN R PHN R from flowchart: when OXA < 20 or PEN > 0.06
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S MFX S does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S S LVX I does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R does not explicitly state that it is for other fluoroquinolones
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S
EUCAST Breakpoints 13.1 Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio PEF-S S CIP, LVX S
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio PEF-S I CIP, LVX I
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio PEF-S R CIP, LVX R
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio ERY S AZM S
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio ERY I AZM I
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio ERY R AZM R
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio TCY-S S DOX S
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio TCY-S I DOX I
EUCAST Breakpoints 13.1 Vibrio spp. genus is Vibrio TCY-S R DOX R
EUCAST Breakpoints 13.1 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S will be expanded in eucast_rules()
EUCAST Breakpoints 13.1 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R will be expanded in eucast_rules()
EUCAST Breakpoints 13.1 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S will be expanded in eucast_rules()
EUCAST Breakpoints 13.1 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I will be expanded in eucast_rules()
EUCAST Breakpoints 13.1 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R will be expanded in eucast_rules()
EUCAST Breakpoints Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints Anaerobic bacteria genus is Prevotella AMP S AMX S
EUCAST Breakpoints Anaerobic bacteria genus is Prevotella AMP I AMX I
EUCAST Breakpoints Anaerobic bacteria genus is Prevotella AMP R AMX R
EUCAST Breakpoints Anaerobic bacteria genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP S AMX S
EUCAST Breakpoints Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP I AMX I
EUCAST Breakpoints Anaerobic bacteria genus_species is Fusobacterium necrophorum AMP R AMX R
EUCAST Breakpoints Anaerobic bacteria genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
EUCAST Breakpoints Anaerobic bacteria genus_species is Clostridium perfringens AMP S AMX S
EUCAST Breakpoints Anaerobic bacteria genus_species is Clostridium perfringens AMP I AMX I
EUCAST Breakpoints Anaerobic bacteria genus_species is Clostridium perfringens AMP R AMX R
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes AMP S AMX S
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes AMP I AMX I
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes AMP R AMX R
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes CTX S CRO S
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes CTX I CRO I
EUCAST Breakpoints Anaerobic bacteria genus_species is Cutibacterium acnes CTX R CRO R
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN S CTX S
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY I DOX I
EUCAST Breakpoints Corynebacterium diphtheriae/ulcerans genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. order is Enterobacterales PEN, glycopeptides, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species one_of Citrobacter koseri, Citrobacter amalonaticus AMP, AMX, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Citrobacter freundii AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species one_of Enterobacter cloacae complex AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Escherichia hermannii AMP, AMX, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Hafnia alvei AMP, AMX, PLB, COL R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Klebsiella aerogenes AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species one_of Klebsiella pneumoniae complex AMX, AMP, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Klebsiella oxytoca AMX, AMP, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Leclercia adecarboxylata FOS R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Morganella morganii AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Plesiomonas shigelloides AMX, AMP, SAM R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Proteus mirabilis tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Proteus penneri AMP, AMX, CZO, CEP, LEX, CFR, CXM, tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Proteus vulgaris AMP, AMX, CZO, CEP, LEX, CFR, CXM, tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Providencia rettgeri AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Providencia stuartii AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, tetracyclines, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus is Raoultella AMP, AMX, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Serratia marcescens AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX, CXM, PLB, COL, NIT R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Yersinia enterocolitica AMP, AMX, AMC, SAM, TIC, CZO, CEP, LEX, CFR, FOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Yersinia pseudotuberculosis PLB, COL R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Aeromonas hydrophila AMP, AMX, SAM R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Aeromonas veronii AMP, AMX, SAM, TIC R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Aeromonas dhakensis AMP, AMX, SAM, FOX R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Aeromonas caviae AMP, AMX, SAM R
EUCAST Expected phenotypes 1.2 Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. genus_species is Aeromonas jandaei AMP, AMX, SAM, TIC R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus one_of Acinetobacter, Achromobacter, Burkholderia, Elizabethkingia, Elizabethkingia, Ochrobactrum, Pseudomonas, Stenotrophomonas, Chryseobacterium PEN, cephalosporins_1st, cephalosporins_2nd, glycopeptides, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species one_of Acinetobacter baumannii, Acinetobacter pittii, Acinetobacter nosocomialis AMP, AMX, AMC, CTX, CRO, ATM, ETP, TMP, FOS, TCY, DOX R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Achromobacter xylosoxidans AMP, AMX, CTX, CRO, ATM, ETP R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species one_of Burkholderia cepacia complex AMP, AMX, AMC, SAM, TIC, TCC, PIP, TZP, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, PLB, COL R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Elizabethkingia meningoseptica AMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, PLB, COL R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Elizabethkingia anophelis AMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Ochrobactrum anthropi AMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Pseudomonas aeruginosa AMP, AMX, AMC, SAM, CTX, CRO, ETP, CHL, TMP, KAN, NEO, tetracyclines, TGC R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus_species is Stenotrophomonas maltophilia AMP, AMX, AMC, SAM, TIC, PIP, TZP, CTX, CRO, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R
EUCAST Expected phenotypes 1.2 Table 2: Expected resistant phenotype in non-fermentative gram-negative bacteria genus is Chryseobacterium AMP, AMX, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, PLB, COL R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus_species is Haemophilus influenzae FUS, streptogramins R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus_species is Moraxella catarrhalis TMP R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus is Neisseria TMP R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL R
EUCAST Expected phenotypes 1.2 Table 3: Expected resistant phenotype in other gram-negative bacteria genus_species one_of Campylobacter jejuni, Campylobacter coli FUS, streptogramins, TMP R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria gramstain is Gram-positive ATM, TEM, PLB, COL, NAL R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Staphylococcus cohnii CAZ, NOV R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Staphylococcus xylosus CAZ, NOV R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Staphylococcus capitis CAZ, FOS R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species one_of Coagulase-negative Staphylococcus (CoNS), Staphylococcus aureus CAZ R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus is Streptococcus FUS, CAZ, aminoglycosides R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, sulfonamides R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species one_of Enterococcus gallinarum, Enterococcus casseliflavus FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, sulfonamides R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, sulfonamides R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus is Corynebacterium FOS R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Listeria monocytogenes CAZ, cephalosporins_except_CAZ R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus one_of Leuconostoc, Pediococcus VAN, FOS R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria genus_species is Lactobacillus casei VAN, FOS R
EUCAST Expected phenotypes 1.2 Table 4: Expected resistant phenotype in gram-positive bacteria fullname is Lactobacillus casei rhamnosus VAN, FOS R
EUCAST Expected phenotypes 1.2 Table 5: Expected resistant phenotype in anaerobes genus_species one_of Clostridium ramosum, Clostridium innocuum VAN R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) order is Enterobacterales PEN, glycopeptides_except_lipo, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, CZO, FOX R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Enterobacter cloacae aminopenicillins, AMC, CZO, FOX R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Klebsiella aerogenes aminopenicillins, AMC, CZO, FOX R originally Enterobacter aerogenes, but was renamed to Klebsiella aerogenes
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Escherichia hermannii aminopenicillins, TIC R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Hafnia alvei aminopenicillins, AMC, CZO, FOX R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus is Klebsiella aminopenicillins, TIC R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Morganella morganii aminopenicillins, AMC, CZO, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Proteus mirabilis DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Proteus penneri aminopenicillins, CZO, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Proteus vulgaris aminopenicillins, CZO, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Providencia rettgeri aminopenicillins, AMC, CZO, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Providencia stuartii aminopenicillins, AMC, CZO, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus is Raoultella aminopenicillins, TIC R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Serratia marcescens aminopenicillins, AMC, CZO, FOX, CXM, DOX, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Yersinia enterocolitica aminopenicillins, AMC, TIC, CZO, FOX R
EUCAST Expert Rules 3.1 Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) genus_species is Yersinia pseudotuberculosis PLB, COL R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordetella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas PEN, FOX, CXM, glycopeptides_except_lipo, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Acinetobacter baumannii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Acinetobacter pittii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Acinetobacter nosocomialis aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Acinetobacter calcoaceticus aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Achromobacter xylosoxidans aminopenicillins, CZO, CTX, CRO, ETP R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria fullname like ^Burkholderia (ambifaria|anthina|arboris|cepacia|cenocepacia|contaminans|diffusa|dolosa|lata|latens|metallica|multivorans|paludis|pseudomultivorans|pyrrocinia|pseudomultivorans|seminalis|stabilis|stagnalis|territorii|ubonensis|vietnamiensis) aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Elizabethkingia meningoseptica aminopenicillins, AMC, TIC, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Brucella anthropi aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Pseudomonas aeruginosa aminopenicillins, AMC, CZO, CTX, CRO, ETP, CHL, KAN, NEO, TMP, SXT, DOX, MNO, TCY, TGC R
EUCAST Expert Rules 3.1 Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria genus_species is Stenotrophomonas maltophilia aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides_except_lipo, LIN, DAP, LNZ R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus_species is Haemophilus influenzae FUS, streptogramins R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus_species is Moraxella catarrhalis TMP R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus is Neisseria TMP R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus_species is Campylobacter jejuni FUS, streptogramins, TMP R
EUCAST Expert Rules 3.1 Table 03: Intrinsic resistance in other Gram-negative bacteria genus_species is Campylobacter coli FUS, streptogramins, TMP R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria gramstain is Gram-positive ATM, polymyxins, NAL R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus cohnii CAZ, NOV R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus xylosus CAZ, NOV R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus capitis CAZ, FOS R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus aureus CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus epidermidis CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus coagulase-negative CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus hominis CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus haemolyticus CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus intermedius CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Staphylococcus pseudintermedius CAZ R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus is Streptococcus FUS, CAZ, aminoglycosides R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, TMP, SXT R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Enterococcus gallinarum FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Enterococcus casseliflavus FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, TMP, SXT R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus is Corynebacterium FOS R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Listeria monocytogenes cephalosporins R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus one_of Leuconostoc, Pediococcus glycopeptides_except_lipo R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus is Lactobacillus glycopeptides_except_lipo R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Clostridium ramosum VAN R
EUCAST Expert Rules 3.1 Table 04: Intrinsic resistance in Gram-positive bacteria genus_species is Clostridium innocuum VAN R
EUCAST Expert Rules 3.1 Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, cephalosporins_except_CAZ, carbapenems S
EUCAST Expert Rules 3.1 Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci genus is Enterococcus AMP R ureidopenicillins, carbapenems R
EUCAST Expert Rules 3.1 Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci genus is Enterococcus AMX R ureidopenicillins, carbapenems R
EUCAST Expert Rules 3.1 Table 09: Interpretive rules for B-lactam agents and Gram-negative rods (at the time: Enterobacteriaceae) order is Enterobacterales TIC, PIP R, S PIP R
EUCAST Expert Rules 3.1 Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins genus like .* ERY S AZM, CLR S
EUCAST Expert Rules 3.1 Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins genus like .* ERY I AZM, CLR I
EUCAST Expert Rules 3.1 Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins genus like .* ERY R AZM, CLR R
EUCAST Expert Rules 3.1 Table 12: Interpretive rules for aminoglycosides genus is Staphylococcus TOB R KAN, AMK R
EUCAST Expert Rules 3.1 Table 12: Interpretive rules for aminoglycosides genus is Staphylococcus GEN R aminoglycosides R
EUCAST Expert Rules 3.1 Table 12: Interpretive rules for aminoglycosides order is Enterobacterales GEN, TOB I, S GEN R
EUCAST Expert Rules 3.1 Table 12: Interpretive rules for aminoglycosides order is Enterobacterales GEN, TOB R, I TOB R
EUCAST Expert Rules 3.1 Table 13: Interpretive rules for quinolones genus is Staphylococcus MFX R fluoroquinolones R
EUCAST Expert Rules 3.1 Table 13: Interpretive rules for quinolones genus_species is Streptococcus pneumoniae MFX R fluoroquinolones R
EUCAST Expert Rules 3.1 Table 13: Interpretive rules for quinolones order is Enterobacterales CIP R fluoroquinolones R
EUCAST Expert Rules 3.1 Table 13: Interpretive rules for quinolones genus_species is Neisseria gonorrhoeae CIP R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Campylobacter genus is Campylobacter ERY S CLR, AZM S
EUCAST Expert Rules 3.2 Expert Rules on Campylobacter genus_species is Campylobacter ERY R CLR, AZM R
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales genus_species one_of Escherichia coli, Proteus mirabilis AMP R PIP R
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales genus_species one_of Escherichia coli, Proteus mirabilis AMP S PIP S
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales fullname like ^(Klebsiella(?! aerogenes)|Raoultella) PIP R
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter freundii|Serratia|Morganella morganii|Hafnia alvei|Providencia) CXM S CXM, cephalosporins_2nd R
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales genus one_of Arsenophonus, Biostraticola, Brenneria, Buchnera, Budvicia, Buttiauxella, Cedecea, Citrobacter, Cosenzaea, Cronobacter, Dickeya, Edwardsiella, Enterobacillus, Enterobacter, Erwinia, Escherichia, Ewingella, Franconibacter, Gibbsiella, Hafnia, Izhakiella, Klebsiella, Kluyvera, Kosakonia, Leclercia, Lelliottia, Leminorella, Lonsdalea, Mangrovibacter, Mixta, Moellerella, Morganella, Obesumbacterium, Pantoea, Pectobacterium, Phaseolibacter, Photorhabdus, Phytobacter, Plesiomonas, Pluralibacter, Pragia, Proteus, Providencia, Pseudescherichia, Pseudocitrobacter, Rahnella, Raoultella, Rosenbergiella, Rouxiella, Saccharobacter, Samsonia, Serratia, Shigella, Shimwellia, Siccibacter, Sodalis, Tatumella, Thorsellia, Trabulsiella, Wigglesworthia, Xenorhabdus, Yersinia, Yokenella CIP R fluoroquinolones R This is Enterobacterales except Salmonella spp.
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales fullname like ^(Serratia|Providencia|Morganella morganii) TGC R
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CTX S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CRO S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CAZ S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CTX I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CRO I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CAZ I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.2 Expert Rules on Enterococcus fullname like ^Enterococcus (faecalis|faecium) AMP R ureidopenicillins, IPM R
EUCAST Expert Rules 3.2 Expert Rules on Enterococcus fullname like ^Enterococcus (faecalis|faecium) AMX R ureidopenicillins, IPM R
EUCAST Expert Rules 3.2 Expert Rules on Enterococcus genus is Enterococcus NOR S CIP, LVX S
EUCAST Expert Rules 3.2 Expert Rules on Enterococcus genus is Enterococcus VAN S lipoglycopeptides S
EUCAST Expert Rules 3.2 Expert Rules on Enterococcus genus_species is Enterococcus faecium CLI R
EUCAST Expert Rules 3.2 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae PEN S betalactams S
EUCAST Expert Rules 3.2 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae NAL S fluoroquinolones S
EUCAST Expert Rules 3.2 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae NAL R CIP, LVX, MFX R
EUCAST Expert Rules 3.2 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Expert Rules 3.2 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Expert Rules 3.2 Expert Rules on Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL S fluoroquinolones S
EUCAST Expert Rules 3.2 Expert Rules on Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Salmonella genus is Salmonella cephalosporins_2nd R
EUCAST Expert Rules 3.2 Expert Rules on Salmonella genus is Salmonella aminoglycosides R
EUCAST Expert Rules 3.2 Expert Rules on Salmonella genus is Salmonella PEF R CIP R
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus_species is Staphylococcus aureus FOX R betalactams R
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus_species is Staphylococcus aureus FOX S betalactams_with_inhibitor S
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus_species one_of Staphylococcus aureus, Staphylococcus lugdunensis PEN R AMP, AMX, AZL, BAM, CRB, CRN, EPC, HET, MEC, MEZ, MTM, PIP, PME, PVM, SBC, TAL, TEM, TIC R all penicillins without beta-lactamse inhibitor
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus ERY, CLI S macrolides, lincosamides S
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus LVX R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus MFX R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus TCY S DOX, MNO, TGC S
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus TCY R DOX, MNO R
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus VAN S lipoglycopeptides S
EUCAST Expert Rules 3.2 Expert Rules on Staphylococcus genus is Staphylococcus LNZ S TZD S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, cephalosporins, carbapenems S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S LVX, MFX S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR R LVX, MFX R
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA S PHN, PEN, aminopenicillins, cephalosporins_except_CAZ, carbapenems S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S LVX, MFX S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR R LVX, MFX R
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae LVX R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae MFX R fluoroquinolones R
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY S DOX, MNO S
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY R DOX, MNO R
EUCAST Expert Rules 3.2 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae VAN S lipoglycopeptides S
EUCAST Expert Rules 3.2 Expert Rules on Viridans Group Streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN S aminopenicillins, CTX, CRO S
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. order is Enterobacterales PEN, glycopeptides_except_lipo, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Enterobacter cloacae aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Escherichia hermannii aminopenicillins, TIC R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Hafnia alvei aminopenicillins, AMC, SAM, CXM, CZO, CEP, LEX, CFR, FOX, polymyxins R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Klebsiella aerogenes aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Klebsiella oxytoca aminopenicillins, TIC R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Klebsiella( pneumoniae| quasipneumoniae| variicola)? aminopenicillins, TIC R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Leclercia adecarboxylata FOS R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Morganella morganii aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Plesiomonas shigelloides aminopenicillins, AMC, SAM R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus mirabilis DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus penneri aminopenicillins, CZO, CEP, LEX, CFR, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus vulgaris aminopenicillins, CZO, CEP, LEX, CFR, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Providencia rettgeri aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Providencia stuartii aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus is Raoultella aminopenicillins, TIC R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Serratia marcescens aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX, CXM, DOX, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Yersinia enterocolitica aminopenicillins, AMC, SAM, TIC, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Yersinia pseudotuberculosis polymyxins R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas hydrophila aminopenicillins, AMC, SAM, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas veronii aminopenicillins, AMC, SAM, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas dhakensis aminopenicillins, AMC, SAM, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas caviae aminopenicillins, AMC, SAM, FOX R
EUCAST Expert Rules 3.2 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas jandaei aminopenicillins, AMC, SAM, TIC, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordetella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas PEN, cephalosporins_1st, cephalosporins_2nd, glycopeptides_except_lipo, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria fullname like ^Acinetobacter (baumannii|pittii|nosocomialis) aminopenicillins, AMC, CRO, CTX, ATM, ETP, TMP, FOS, DOX, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus is Acinetobacter DOX, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Achromobacter xylosoxidans aminopenicillins, CRO, CTX, ETP R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria fullname like ^Burkholderia (ambifaria|anthina|arboris|cepacia|cenocepacia|contaminans|diffusa|dolosa|lata|latens|metallica|multivorans|paludis|pseudomultivorans|pyrrocinia|pseudomultivorans|seminalis|stabilis|stagnalis|territorii|ubonensis|vietnamiensis) aminopenicillins, AMC, SAM, TIC, TCC, PIP, TZP, CRO, CTX, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Elizabethkingia meningoseptica aminopenicillins, AMC, SAM, TIC, TCC, PIP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Brucella anthropi aminopenicillins, AMC, SAM, TIC, TCC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Pseudomonas aeruginosa aminopenicillins, AMC, SAM, CTX, CRO, ETP, CHL, KAN, NEO, TMP, DOX, MNO, TCY, TGC R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Stenotrophomonas maltophilia aminopenicillins, AMC, SAM, TIC, PIP, TZP, CRO, CTX, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.2 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Haemophilus influenzae FUS, streptogramins, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.2 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Moraxella catarrhalis TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.2 Table 3: Intrinsic resistance in other gram-negative bacteria genus is Neisseria TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.2 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.2 Table 3: Intrinsic resistance in other gram-negative bacteria fullname like ^Campylobacter (jejuni|coli) FUS, streptogramins, TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria gramstain is Gram-positive ATM, TEM, polymyxins, NAL R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus cohnii CAZ, NOV R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus xylosus CAZ, NOV R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus capitis CAZ, FOS R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus aureus CAZ R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus coagulase-negative CAZ R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus is Streptococcus FUS, CAZ, aminoglycosides R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus is Corynebacterium FOS R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Listeria monocytogenes CAZ, cephalosporins_except_CAZ R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus one_of Leuconostoc, Pediococcus VAN, TEC R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria genus is Lactobacillus VAN, TEC R
EUCAST Expert Rules 3.2 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Clostridium (ramosum|innocuum) VAN R
EUCAST Expert Rules 3.3 Expert Rules on Campylobacter genus is Campylobacter ERY S CLR, AZM S
EUCAST Expert Rules 3.3 Expert Rules on Campylobacter genus_species is Campylobacter ERY R CLR, AZM R
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales genus_species one_of Escherichia coli, Proteus mirabilis AMP R PIP R
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales genus_species one_of Escherichia coli, Proteus mirabilis AMP S PIP S
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales fullname like ^(Klebsiella(?! aerogenes)|Raoultella) PIP R
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter freundii|Serratia|Morganella morganii|Hafnia alvei|Providencia) CXM S CXM, cephalosporins_2nd R
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales genus one_of Arsenophonus, Biostraticola, Brenneria, Buchnera, Budvicia, Buttiauxella, Cedecea, Citrobacter, Cosenzaea, Cronobacter, Dickeya, Edwardsiella, Enterobacillus, Enterobacter, Erwinia, Escherichia, Ewingella, Franconibacter, Gibbsiella, Hafnia, Izhakiella, Klebsiella, Kluyvera, Kosakonia, Leclercia, Lelliottia, Leminorella, Lonsdalea, Mangrovibacter, Mixta, Moellerella, Morganella, Obesumbacterium, Pantoea, Pectobacterium, Phaseolibacter, Photorhabdus, Phytobacter, Plesiomonas, Pluralibacter, Pragia, Proteus, Providencia, Pseudescherichia, Pseudocitrobacter, Rahnella, Raoultella, Rosenbergiella, Rouxiella, Saccharobacter, Samsonia, Serratia, Shigella, Shimwellia, Siccibacter, Sodalis, Tatumella, Thorsellia, Trabulsiella, Wigglesworthia, Xenorhabdus, Yersinia, Yokenella CIP R fluoroquinolones R This is Enterobacterales except Salmonella spp.
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales fullname like ^(Serratia|Providencia|Morganella morganii) TGC R
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CTX S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CRO S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CAZ S CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CTX I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CRO I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterobacterales (AmpC de-repressed cephalosporins) fullname like ^(Enterobacter|Klebsiella aerogenes|Citrobacter braakii|Citrobacter freundii|Citrobacter gillenii|Citrobacter murliniae|Citrobacter rodenticum|Citrobacter sedlakii|Citrobacter werkmanii|Citrobacter youngae|Hafnia alvei|Serratia|Morganella morganii|Providencia) CAZ I CTX, CRO, CAZ This is rule 3 and 4 of EUCAST Expert Rules v3.2 on Enterobacterales, result will be set with the 'ampc_derepressed_cephalosporins' argument
EUCAST Expert Rules 3.3 Expert Rules on Enterococcus fullname like ^Enterococcus (faecalis|faecium) AMP R ureidopenicillins, IPM R
EUCAST Expert Rules 3.3 Expert Rules on Enterococcus fullname like ^Enterococcus (faecalis|faecium) AMX R ureidopenicillins, IPM R
EUCAST Expert Rules 3.3 Expert Rules on Enterococcus genus is Enterococcus NOR S CIP, LVX S
EUCAST Expert Rules 3.3 Expert Rules on Enterococcus genus is Enterococcus VAN S lipoglycopeptides S
EUCAST Expert Rules 3.3 Expert Rules on Enterococcus genus_species is Enterococcus faecium CLI R
EUCAST Expert Rules 3.3 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae PEN S betalactams S
EUCAST Expert Rules 3.3 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae NAL S fluoroquinolones S
EUCAST Expert Rules 3.3 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae NAL R CIP, LVX, MFX R
EUCAST Expert Rules 3.3 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae TCY S DOX, MNO S
EUCAST Expert Rules 3.3 Expert Rules on Haemophilus influenzae genus_species is Haemophilus influenzae TCY R DOX, MNO R
EUCAST Expert Rules 3.3 Expert Rules on Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL S fluoroquinolones S
EUCAST Expert Rules 3.3 Expert Rules on Moraxella catarrhalis genus_species is Moraxella catarrhalis NAL R fluoroquinolones R
EUCAST Expert Rules 3.3 Expert Rules on Salmonella genus is Salmonella cephalosporins_2nd R
EUCAST Expert Rules 3.3 Expert Rules on Salmonella genus is Salmonella aminoglycosides R
EUCAST Expert Rules 3.3 Expert Rules on Salmonella genus is Salmonella PEF R CIP R
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus_species is Staphylococcus aureus FOX R betalactams R
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus_species is Staphylococcus aureus FOX S betalactams_with_inhibitor S
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus_species one_of Staphylococcus aureus, Staphylococcus lugdunensis PEN R AMP, AMX, AZL, BAM, CRB, CRN, EPC, HET, MEC, MEZ, MTM, PIP, PME, PVM, SBC, TAL, TEM, TIC R all penicillins without beta-lactamse inhibitor
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus ERY, CLI S macrolides, lincosamides S
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus LVX R fluoroquinolones R
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus MFX R fluoroquinolones R
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus TCY S DOX, MNO, TGC S
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus TCY R DOX, MNO R
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus VAN S lipoglycopeptides S
EUCAST Expert Rules 3.3 Expert Rules on Staphylococcus genus is Staphylococcus LNZ S TZD S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, cephalosporins, carbapenems S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S LVX, MFX S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus A, B, C and G genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR R LVX, MFX R
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae OXA S PHN, PEN, aminopenicillins, cephalosporins_except_CAZ, carbapenems S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR S LVX, MFX S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae NOR R LVX, MFX R
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae LVX R fluoroquinolones R
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae MFX R fluoroquinolones R
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY S DOX, MNO S
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae TCY R DOX, MNO R
EUCAST Expert Rules 3.3 Expert Rules on Streptococcus pneumoniae genus_species is Streptococcus pneumoniae VAN S lipoglycopeptides S
EUCAST Expert Rules 3.3 Expert Rules on Viridans Group Streptococci genus_species one_of Viridans Group Streptococcus (VGS) PEN S aminopenicillins, CTX, CRO S
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. order is Enterobacterales PEN, glycopeptides_except_lipo, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Enterobacter cloacae aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Escherichia hermannii aminopenicillins, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Hafnia alvei aminopenicillins, AMC, polymyxins R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Klebsiella aerogenes aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Klebsiella oxytoca aminopenicillins, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. fullname like ^Klebsiella( pneumoniae| quasipneumoniae| variicola)? aminopenicillins, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Leclercia adecarboxylata FOS R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Morganella morganii aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Plesiomonas shigelloides aminopenicillins, AMC, SAM R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus mirabilis DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus penneri aminopenicillins, CZO, CEP, LEX, CFR, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Proteus vulgaris aminopenicillins, CZO, CEP, LEX, CFR, CXM, DOX, MNO, TCY, TGC, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Providencia rettgeri aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Providencia stuartii aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, DOX, MNO, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus is Raoultella aminopenicillins, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Serratia marcescens aminopenicillins, AMC, SAM, CZO, CEP, LEX, CFR, FOX, CXM, DOX, TCY, polymyxins, NIT R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Yersinia enterocolitica aminopenicillins, AMC, SAM, TIC, CZO, CEP, LEX, CFR, FOX R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Yersinia pseudotuberculosis polymyxins R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas hydrophila aminopenicillins, SAM R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas veronii aminopenicillins, SAM, TIC R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas dhakensis aminopenicillins, SAM, FOX R
EUCAST Expert Rules 3.3 Table 1: Intrinsic resistance in Enterobacterales and Aeromonas spp. genus_species is Aeromonas caviae aminopenicillins, SAM R
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordetella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas PEN, cephalosporins_1st, cephalosporins_2nd, glycopeptides_except_lipo, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria fullname like ^Acinetobacter (baumannii|pittii|nosocomialis) aminopenicillins, AMC, CRO, CTX, ATM, ETP, TMP, FOS, DOX, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus is Acinetobacter DOX, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Achromobacter xylosoxidans aminopenicillins, CRO, CTX, ETP, ATM R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria fullname like ^Burkholderia (ambifaria|anthina|arboris|cepacia|cenocepacia|contaminans|diffusa|dolosa|lata|latens|metallica|multivorans|paludis|pseudomultivorans|pyrrocinia|pseudomultivorans|seminalis|stabilis|stagnalis|territorii|ubonensis|vietnamiensis) aminopenicillins, AMC, SAM, TIC, TCC, PIP, TZP, CRO, CTX, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Elizabethkingia meningoseptica aminopenicillins, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Elizabethkingia anophelis aminopenicillins, AMC, SAM, TIC, TCC, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Brucella anthropi aminopenicillins, AMC, SAM, TIC, TCC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Pseudomonas aeruginosa aminopenicillins, AMC, SAM, CTX, CRO, ETP, CHL, KAN, NEO, TMP, DOX, MNO, TCY, TGC R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus_species is Stenotrophomonas maltophilia aminopenicillins, AMC, SAM, TIC, PIP, TZP, CRO, CTX, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 2: Intrinsic resistance in non-fermentative gram-negative bacteria genus is Chryseobacterium aminopenicillins, AMC, SAM, TIC, TCC, CRO, CTX, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, polymyxins R Additional rules from header added in separate rule (genus is one of…)
EUCAST Expert Rules 3.3 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Haemophilus influenzae FUS, streptogramins, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.3 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Moraxella catarrhalis TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.3 Table 3: Intrinsic resistance in other gram-negative bacteria genus is Neisseria TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.3 Table 3: Intrinsic resistance in other gram-negative bacteria genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.3 Table 3: Intrinsic resistance in other gram-negative bacteria fullname like ^Campylobacter (jejuni|coli) FUS, streptogramins, TMP, glycopeptides_except_lipo, lipoglycopeptides, lincosamides, oxazolidinones R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria gramstain is Gram-positive ATM, TEM, polymyxins, NAL R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus cohnii CAZ, NOV R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus xylosus CAZ, NOV R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus capitis CAZ, FOS R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus aureus CAZ R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Staphylococcus coagulase-negative CAZ R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus is Streptococcus FUS, CAZ, aminoglycosides R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecalis TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Enterococcus (gallinarum|casseliflavus) TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_except_CAZ, aminoglycosides, macrolides, SDI, SUD, SDM, SLF, SLF1, SLF2, SZO, SLF3, SLF4, SMX, SLF5, SLF6, SLF7, SLF8, SLF9, SLF10, SLF11, SLF12, SUT, SLF13 R These last ones are all true sulfonamides
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP S SXT, SLT1, SLT2, SLT3, SLT4, SLT5 S Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP I SXT, SLT1, SLT2, SLT3, SLT4, SLT5 I Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Enterococcus faecium TMP R SXT, SLT1, SLT2, SLT3, SLT4, SLT5 R Since R to sulfonamides - TMP result is equal with combinations
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus is Corynebacterium FOS R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus_species is Listeria monocytogenes CAZ, cephalosporins_except_CAZ R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus one_of Leuconostoc, Pediococcus VAN, TEC R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria genus is Lactobacillus VAN, TEC R
EUCAST Expert Rules 3.3 Table 4: Intrinsic resistance in gram-positive bacteria fullname like ^Clostridium (ramosum|innocuum) VAN R
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