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a9017a57bd
AMR/reference
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github-actions a9017a57bd Built site for AMR@2.1.1.9094: 9450137
2024-10-10 14:45:12 +00:00
..
figures Built site for AMR: 1.8.2.9061@eed1c14 2022-12-11 10:50:34 +00:00
%like_case%.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
%like%.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
%unlike_case%.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
%unlike%.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
3MRGN.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
4MRGN.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_atc_group1.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_atc_group2.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_atc.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_cid.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_class.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_ddd_units.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_ddd.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_from_text.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
ab_group.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_info.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_loinc.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_name.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_property.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
ab_selector.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_synonyms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_tradenames.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab_url.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ab.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
add_custom_antimicrobials.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
add_custom_microorganisms.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
administrable_iv.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
administrable_per_os.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
age_groups-1.png Built site for AMR@2.1.1.9083: 8907e8e 2024-09-30 17:20:49 +00:00
age_groups.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
age.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
all_antimicrobials.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
aminoglycosides.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
aminopenicillins.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
amr_distance_from_row.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
AMR-options.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
AMR-package.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
AMR.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
anti_join_microorganisms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
antibiogram-1.png Built site for AMR@2.1.1.9078: 1278924 2024-09-22 09:55:27 +00:00
antibiogram-2.png Built site for AMR@2.1.1.9078: 1278924 2024-09-22 09:55:27 +00:00
antibiogram-3.png Built site for AMR@2.1.1.9078: 1278924 2024-09-22 09:55:27 +00:00
antibiogram-4.png Built site for AMR@2.1.1.9078: 1278924 2024-09-22 09:55:27 +00:00
antibiogram.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
antibiotic_class_selectors.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
antibiotics.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
antifungals.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
antimicrobials_equal.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
antimycobacterials.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
antivirals.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
as.ab.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.av.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.disk.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.mic-1.png cli-154-2226 2024-04-19 08:24:46 +00:00
as.mic-2.png Built site for AMR@2.1.1.9086: 50a9f8f 2024-10-02 08:29:15 +00:00
as.mic-3.png Built site for AMR@2.1.1.9086: 50a9f8f 2024-10-02 08:29:15 +00:00
as.mic-4.png Built site for AMR@2.1.1.9086: 50a9f8f 2024-10-02 08:29:15 +00:00
as.mic.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.mo.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.sir-1.png Built site for AMR: 1.8.2.9096@98e62c9 2023-01-21 22:53:21 +00:00
as.sir-2.png Built site for AMR: 1.8.2.9096@98e62c9 2023-01-21 22:53:21 +00:00
as.sir.data.frame.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
as.sir.default.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
as.sir.disk.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
as.sir.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
as.sir.mic.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
atc_online_ddd_units.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
atc_online_ddd.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
atc_online_groups.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
atc_online.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
ATC.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
autoplot.antibiogram.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
autoplot.disk.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
autoplot.mic.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
autoplot.resistance_predict.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
autoplot.sir.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_atc.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_cid.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_ddd_units.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_ddd.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_from_text.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
av_group.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_info.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_loinc.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_name.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_property.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
av_synonyms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_tradenames.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av_url.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
av.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
availability.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
betalactams.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
brmo.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
BRMO.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
bug_drug_combinations.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
carbapenems.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins_1st.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins_2nd.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins_3rd.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins_4th.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins_5th.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
cephalosporins.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
clear_custom_antimicrobials.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
clear_custom_microorganisms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
clinical_breakpoints.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
count_all.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_df.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_I.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_IR.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_R.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_resistant.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_S.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_SI.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count_susceptible.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
count.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
custom_eucast_rules.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
custom_mdro_guideline.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
disk.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
dosage.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
droplevels.mic.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
eucast_dosage.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
eucast_exceptional_phenotypes.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
eucast_rules.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
EUCAST.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
example_isolates_unclean.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
example_isolates.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
export_ncbi_biosample.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
facet_sir.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
filter_first_isolate.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
first_isolate.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
fluoroquinolones.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
format.bug_drug_combinations.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
fortify.disk.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
fortify.mic.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
fortify.sir.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
full_join_microorganisms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
g.test.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
geom_sir.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
get_AMR_locale.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
get_episode.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
get_mo_source.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ggplot_pca-1.png Built site for AMR: 2.1.1.9002@c746176 2023-12-03 10:41:04 +00:00
ggplot_pca-2.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_pca.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
ggplot_sir_predict.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
ggplot_sir-1.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-2.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-3.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-4.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-5.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-6.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-7.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-8.png Built site for AMR@2.1.1.9083: 8907e8e 2024-09-30 17:20:49 +00:00
ggplot_sir-9.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir-10.png Built site for AMR@2.1.1.9073: 2975697 2024-09-19 12:05:20 +00:00
ggplot_sir.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
glycopeptides.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
guess_ab_col.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
index.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
inner_join_microorganisms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
inner_join.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
intrinsic_resistant.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
is_new_episode.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is_sir_eligible.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.ab.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.av.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.disk.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.mic.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.mo.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
is.sir.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
italicise_taxonomy.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
italicize_taxonomy.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
join.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
key_antimicrobials.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
knit_print.antibiogram.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
kurtosis.data.frame.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
kurtosis.default.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
kurtosis.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
kurtosis.matrix.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
labels_sir_count.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
left_join_microorganisms.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
like.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
lincosamides.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
lipoglycopeptides.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
macrolides.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
mdr_cmi2012.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
mdr_tb.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
MDR.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
mdro.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
mean_amr_distance.data.frame.html Built site for AMR@2.1.1.9063: 640888f 2024-07-16 13:00:55 +00:00
mean_amr_distance.html Built site for AMR@2.1.1.9094: 9450137 2024-10-10 14:45:12 +00:00
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