mirror of https://github.com/msberends/AMR.git
45 lines
2.1 KiB
R
45 lines
2.1 KiB
R
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This package is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This R package is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License version 2.0 for more details. #
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# ==================================================================== #
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context("deprecated.R")
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test_that("deprecated functions work", {
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expect_identical(is.mo(as.mo("esco")), suppressWarnings(is.bactid(as.bactid("esco"))))
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expect_warning(identical(is.mo(as.mo("esco")), is.bactid(as.bactid("esco"))))
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expect_identical(as.mo("esco"), suppressWarnings(guess_bactid("esco")))
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expect_error(suppressWarnings(ratio("A")))
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expect_error(suppressWarnings(ratio(1, ratio = "abc")))
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expect_error(suppressWarnings(ratio(c(1, 2), ratio = c(1, 2, 3))))
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expect_warning(ratio(c(772, 1611, 737), ratio = "1:2:1"))
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expect_identical(suppressWarnings(ratio(c(772, 1611, 737), ratio = "1:2:1")), c(780, 1560, 780))
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expect_identical(suppressWarnings(ratio(c(1752, 1895), ratio = c(1, 1))), c(1823.5, 1823.5))
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old_mo <- "ESCCOL"
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class(old_mo) <- "bactid"
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df_oldmo <- data.frame(test = old_mo)
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# print
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expect_output(print(old_mo))
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# test pull
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library(dplyr)
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expect_identical(df_oldmo %>% pull(test), old_mo)
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})
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