dr. M.S. (Matthijs) Berends
b937662a97
limits for scale_y_percent - Licence update
2018-12-16 22:45:12 +01:00
dr. M.S. (Matthijs) Berends
1ed0cc9bfd
age_groups fix
2018-12-16 11:40:54 +01:00
dr. M.S. (Matthijs) Berends
bd5f46d734
age_groups fix
2018-12-16 09:50:14 +01:00
dr. M.S. (Matthijs) Berends
2018d5b477
age and age_groups
2018-12-15 22:40:07 +01:00
dr. M.S. (Matthijs) Berends
ecebc60bfd
C stack error fix
2018-12-14 11:44:15 +01:00
dr. M.S. (Matthijs) Berends
857f565db0
reorganised notes and warnings
2018-12-14 10:52:20 +01:00
dr. M.S. (Matthijs) Berends
dec4947103
freq header fix for NAs
2018-12-14 10:08:51 +01:00
dr. M.S. (Matthijs) Berends
e4737d3add
date transformation fix for tibbles
2018-12-14 09:31:53 +01:00
dr. M.S. (Matthijs) Berends
7e5fe75a17
small text fixes
2018-12-14 07:48:12 +01:00
dr. M.S. (Matthijs) Berends
81af7be36e
note about portions
2018-12-14 07:23:25 +01:00
dr. M.S. (Matthijs) Berends
01a6d56334
add kingdom to mo_taxonomy
2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends
5ab7eb07bc
keyab automatic
2018-12-10 15:14:29 +01:00
dr. M.S. (Matthijs) Berends
9478ab71be
freq - decimals
2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends
8e8a9cd190
AI improvements
2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends
87ad6da745
gitlab ci
2018-12-06 16:33:06 +01:00
dr. M.S. (Matthijs) Berends
27c60938cd
appveyor update
2018-12-06 16:26:35 +01:00
dr. M.S. (Matthijs) Berends
74a7f4453b
small CI fix
2018-12-06 16:07:06 +01:00
dr. M.S. (Matthijs) Berends
60fe98bbbd
better as.mo handling
2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends
5cfa5bbfe3
v0.5.0
2018-11-30 16:16:04 +01:00
dr. M.S. (Matthijs) Berends
31e977937d
fix for as.mo and freq
2018-11-30 12:05:59 +01:00
dr. M.S. (Matthijs) Berends
9ddf6dc530
support A. species for as.mo, cleanup
2018-11-24 20:25:09 +01:00
dr. M.S. (Matthijs) Berends
63ba4b2980
small error in freq
2018-11-19 13:06:07 +01:00
dr. M.S. (Matthijs) Berends
a8132922af
unit test read.4d, unselecting freq cols
2018-11-19 13:00:22 +01:00
dr. M.S. (Matthijs) Berends
83c7da85ab
unit tests
2018-11-16 22:28:55 +01:00
dr. M.S. (Matthijs) Berends
d22b7f00da
unit tests
2018-11-16 22:22:42 +01:00
dr. M.S. (Matthijs) Berends
373e0cb32f
unit test fail
2018-11-16 21:57:55 +01:00
dr. M.S. (Matthijs) Berends
4fcc2b409a
MDRO update
2018-11-16 20:50:50 +01:00
dr. M.S. (Matthijs) Berends
fab64e6728
read.4D improvements
2018-11-15 12:42:35 +01:00
dr. M.S. (Matthijs) Berends
5cb8f3cf72
get_locale improvement
2018-11-12 15:07:43 +01:00
dr. M.S. (Matthijs) Berends
6b0f4ffbd4
new kingdom
2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends
9be5e0318b
freq: fix na.rm in groups
2018-11-08 16:10:03 +01:00
dr. M.S. (Matthijs) Berends
84e08f516a
grouping var for freq
2018-11-06 16:41:59 +01:00
dr. M.S. (Matthijs) Berends
54368fafef
dont test french
2018-11-05 22:08:54 +01:00
dr. M.S. (Matthijs) Berends
ee664f2a4c
small fix
2018-11-05 15:36:07 +01:00
dr. M.S. (Matthijs) Berends
d15bb2ab3f
read_4D
2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends
d07e9b904e
new function get_locale
2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends
e548a7ad11
equal != identical
2018-11-02 15:04:48 +01:00
dr. M.S. (Matthijs) Berends
d0bc05e5b1
speed improvement is.rsi.eligible
2018-11-02 14:55:29 +01:00
dr. M.S. (Matthijs) Berends
40a159e78d
more unit tests
2018-11-02 10:27:57 +01:00
dr. M.S. (Matthijs) Berends
e601fd259a
test syntax fix
2018-11-01 20:50:10 +01:00
dr. M.S. (Matthijs) Berends
5476fecc73
eucast update
2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends
f7687557c9
eucast updates
2018-11-01 17:06:08 +01:00
dr. M.S. (Matthijs) Berends
d3f5236690
simplify gitlab ci
2018-10-31 13:42:35 +01:00
dr. M.S. (Matthijs) Berends
84825b33b1
small fix in gitlab CI
2018-10-31 12:57:24 +01:00
dr. M.S. (Matthijs) Berends
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends
3d4c4c678b
Merge branch 'master' of https://gitlab.com/msberends/AMR
2018-10-29 17:26:32 +01:00
dr. M.S. (Matthijs) Berends
1bf8dc2983
as.mo speedup: assigned to namespace
2018-10-29 17:26:17 +01:00
dr. M.S. (Matthijs) Berends
b4e71cdc4f
gitlab ci
2018-10-23 23:17:53 +02:00
dr. M.S. (Matthijs) Berends
d681236791
gitlab ci
2018-10-23 22:55:21 +02:00
dr. M.S. (Matthijs) Berends
19f056a6d7
xml2 dep for gitlab ci
2018-10-23 22:25:53 +02:00
dr. M.S. (Matthijs) Berends
60747e56f0
gitlab fix
2018-10-23 21:37:49 +02:00
dr. M.S. (Matthijs) Berends
9fd38afeb1
CI fix gitlab
2018-10-23 21:26:57 +02:00
dr. M.S. (Matthijs) Berends
f4d6e1dafe
CI fixes
2018-10-23 21:17:05 +02:00
dr. M.S. (Matthijs) Berends
99323e704d
linux deps
2018-10-23 20:38:18 +02:00
dr. M.S. (Matthijs) Berends
0834bdfabc
fix for gitlab pipeline, add covr to appveyor
2018-10-23 20:04:11 +02:00
dr. M.S. (Matthijs) Berends
160e025609
try to fix gitlab pipelines
2018-10-23 19:49:31 +02:00
dr. M.S. (Matthijs) Berends
87757748bd
switch to gitlab
2018-10-23 16:49:40 +02:00
dr. M.S. (Matthijs) Berends
707aa20a37
fixes
2018-10-23 14:59:36 +02:00
dr. M.S. (Matthijs) Berends
7997de6a6d
mdro and 1st isolate improvements
2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends
299c5bea43
na freq, removed factors
2018-10-23 09:42:26 +02:00
dr. M.S. (Matthijs) Berends
9c56257da1
freq - print title bold in markdown
2018-10-22 13:06:54 +02:00
dr. M.S. (Matthijs) Berends
c2a93b46db
breaks param, tidyr dep change, freq markdown
2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends
ec15b82fd6
param header for freq
2018-10-19 21:52:08 +02:00
dr. M.S. (Matthijs) Berends
86b03577a7
fix for as.mo, added also_single_tested
2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends
032c0d51ef
better verbose in EUCAST
2018-10-19 00:57:10 +02:00
dr. M.S. (Matthijs) Berends
b464dd524a
new verbose
2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends
5727800b9a
readme fix
2018-10-18 21:43:12 +02:00
dr. M.S. (Matthijs) Berends
0ef91be3ac
param rules for EUCAST
2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends
693f64bdbf
new EUCAST rules: clinical breakpoints
2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends
d5a41de711
parameter combine_IR
2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends
5b5b95a47b
count_all and some fixes
2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends
e7d937d36e
update NEWS
2018-10-10 10:50:19 +02:00
dr. M.S. (Matthijs) Berends
67521394f6
more unit tests
2018-10-09 15:41:44 +02:00
dr. M.S. (Matthijs) Berends
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends
c7c57f4042
0.4.0, just published on CRAN
2018-10-01 19:36:42 +02:00
dr. M.S. (Matthijs) Berends
6d761436f7
benchmarks on readme and speed improvement for direct mo codes
2018-10-01 16:26:02 +02:00
dr. M.S. (Matthijs) Berends
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends
92c9cc2608
diff for freq, fix for mo_shortname
2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends
a6aa9e95fb
completed old taxonomic names
2018-09-28 20:13:13 +02:00
dr. M.S. (Matthijs) Berends
768fe17324
removed clipboard functions as it violated CRAN policies
2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends
da60f27877
travis cant find knitr vignette builder
2018-09-25 00:36:35 +02:00
dr. M.S. (Matthijs) Berends
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends
df5d82fff3
unit tests
2018-09-17 21:51:21 +02:00
dr. M.S. (Matthijs) Berends
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends
7680e4edd8
add shortest and longest to freq for characters
2018-09-17 09:42:09 +02:00
dr. M.S. (Matthijs) Berends
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
b0ca49d68d
small improvement for is.rsi.eligible, more unit tests
2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends
cf5711fb0b
algorithm improvement
2018-09-14 10:31:21 +02:00
dr. M.S. (Matthijs) Berends
d049ec9e69
ggplot2_rsi fix
2018-09-13 14:48:34 +02:00
dr. M.S. (Matthijs) Berends
cb0d74a4f0
support for French and Italian, added quote to freq
2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
4816419f0c
AI improvements for microorganisms
2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends
936198372e
translate CoNS
2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends
b8a6c9af19
allow failure on macOS
2018-09-07 10:20:01 +02:00
dr. M.S. (Matthijs) Berends
0de65438b1
vignet fix
2018-09-07 09:32:31 +02:00
