dr. M.S. (Matthijs) Berends 4ffac7e22d (v2.1.1.9051) fix VGS mo code		2024-06-16 11:28:56 +02:00
..
_language_update.R
_pre_commit_checks.R
ab.md5
AMR new logo.txt
AMR_intro.ai
AMR_vet.html
AMR_vet.qmd	support veterinary MIC/disk translation	2024-02-24 15:16:52 +01:00
antibiograms.html
antibiograms.pdf
antibiograms.Rmd
antibiotics.dta
antibiotics.feather
antibiotics.parquet
antibiotics.rds
antibiotics.sav
antibiotics.txt
antibiotics.xlsx	(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N	2024-06-14 22:39:01 +02:00
antibiotics.xpt
antivirals.dta	prepare for CRAN	2023-10-20 14:51:48 +02:00
antivirals.feather
antivirals.parquet
antivirals.rds
antivirals.sav
antivirals.txt
antivirals.xlsx
antivirals.xpt
av.md5
bacdive.csv
bartlett_et_al_2022_human_pathogens.xlsx
clin_break.md5
clinical_breakpoints.dta
clinical_breakpoints.feather
clinical_breakpoints.parquet
clinical_breakpoints.rds
clinical_breakpoints.sav
clinical_breakpoints.txt
clinical_breakpoints.xlsx
clinical_breakpoints.xpt
create_survey_page.R
dosage.dta
dosage.feather
dosage.md5
dosage.parquet
dosage.rds
dosage.sav
dosage.txt
dosage.xlsx	Update clinical breakpoints and fix some as.mo() bugs (#117)	2023-06-22 15:10:59 +02:00
dosage.xpt
Dosages_v_11.0_Breakpoint_Tables.xlsx
Dosages_v_12.0_Breakpoint_Tables.pdf
Dosages_v_12.0_Breakpoint_Tables.xlsx
Dosages_v_13.0_Breakpoint_Tables.pdf
Dosages_v_13.0_Breakpoint_Tables.xlsx
eucast_rules.tsv
extractATCs.R
Intrinsic_Resistance_and_Unusual_Phenotypes_Tables_v3.3_20211018.pdf
intrinsic_resistant.dta
intrinsic_resistant.feather
intrinsic_resistant.md5
intrinsic_resistant.parquet
intrinsic_resistant.rds
intrinsic_resistant.sav
intrinsic_resistant.txt
intrinsic_resistant.xlsx
intrinsic_resistant.xpt
intrinsicR.md5
logo.old.svg
logo.svg
Loinc.csv
loinc.R
microorganisms.codes.dta
microorganisms.codes.feather
microorganisms.codes.md5
microorganisms.codes.parquet
microorganisms.codes.rds
microorganisms.codes.sav
microorganisms.codes.txt
microorganisms.codes.xlsx
microorganisms.codes.xpt
microorganisms.dta	Added C. freundii complex and Y. pseudotuberculosis complex	2023-07-14 10:49:06 +02:00
microorganisms.feather
microorganisms.groups.dta
microorganisms.groups.feather
microorganisms.groups.md5
microorganisms.groups.parquet
microorganisms.groups.rds
microorganisms.groups.sav
microorganisms.groups.txt
microorganisms.groups.xlsx
microorganisms.groups.xpt
microorganisms.md5
microorganisms.parquet
microorganisms.rds
microorganisms.sav
microorganisms.txt
microorganisms.xlsx
microorganisms.xpt
mo.md5
organisms.rds
poorman_prepend.R
read_EUCAST.R
reproduction_of_antibiotics.R
reproduction_of_antivirals.R
reproduction_of_clinical_breakpoints.R
reproduction_of_dosage.R
reproduction_of_example_isolates_unclean.R
reproduction_of_intrinsic_resistant.R
reproduction_of_microorganisms.groups.R
reproduction_of_microorganisms.R
reproduction_of_poorman.R
salmonellae.R
salmonellae.rds	use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi	2023-02-06 11:57:22 +01:00
salonella_fix.R
SNOMED_PHVS_Microorganism_CDC_V12.txt
species groups.R
Species groups.xlsx	new species groups, updated clinical breakpoints	2023-07-08 17:30:05 +02:00
taxonomy0.rds
taxonomy1.rds
taxonomy2.rds
taxonomy3.rds
taxonomy_gbif.rds	support veterinary MIC/disk translation	2024-02-24 15:16:52 +01:00
taxonomy_lpsn_missing.rds
taxonomy_lpsn.rds
toxoplasma.R
translations.tsv
v_10.0_Breakpoint_Tables.xlsx
v_11.0_Breakpoint_Tables.xlsx
v_12.0_Breakpoint_Tables.xlsx
v_13.0_Breakpoint_Tables.xlsx
whonet_bugfixes.R