mirror of
https://github.com/msberends/AMR.git
synced 2024-12-27 06:06:12 +01:00
70 lines
3.7 KiB
R
70 lines
3.7 KiB
R
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis for R #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2020 Berends MS, Luz CF et al. #
|
|
# Developed at the University of Groningen, the Netherlands, in #
|
|
# collaboration with non-profit organisations Certe Medical #
|
|
# Diagnostics & Advice, and University Medical Center Groningen. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# #
|
|
# Visit our website for the full manual and a complete tutorial about #
|
|
# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
|
|
# ==================================================================== #
|
|
|
|
context("ab_property.R")
|
|
|
|
test_that("ab_property works", {
|
|
skip_on_cran()
|
|
|
|
expect_identical(ab_name("AMX", language = NULL), "Amoxicillin")
|
|
expect_identical(as.character(ab_atc("AMX")), "J01CA04")
|
|
expect_identical(ab_cid("AMX"), as.integer(33613))
|
|
|
|
expect_equal(class(ab_tradenames("AMX")), "character")
|
|
expect_equal(class(ab_tradenames(c("AMX", "AMX"))), "list")
|
|
|
|
expect_identical(ab_group("AMX", language = NULL), "Beta-lactams/penicillins")
|
|
expect_identical(ab_atc_group1("AMX", language = NULL), "Beta-lactam antibacterials, penicillins")
|
|
expect_identical(ab_atc_group2("AMX", language = NULL), "Penicillins with extended spectrum")
|
|
|
|
expect_identical(ab_name("Fluclox", language = NULL), "Flucloxacillin")
|
|
expect_identical(ab_name("fluklox", language = NULL), "Flucloxacillin")
|
|
expect_identical(ab_name("floxapen", language = NULL), "Flucloxacillin")
|
|
expect_identical(ab_name(21319, language = NULL), "Flucloxacillin")
|
|
expect_identical(ab_name("J01CF05", language = NULL), "Flucloxacillin")
|
|
|
|
expect_identical(ab_ddd("AMX", "oral"), 1.5)
|
|
expect_identical(ab_ddd("AMX", "oral", units = TRUE), "g")
|
|
expect_identical(ab_ddd("AMX", "iv"), 3)
|
|
expect_identical(ab_ddd("AMX", "iv", units = TRUE), "g")
|
|
|
|
expect_identical(ab_name(x = c("AMC", "PLB"), language = NULL), c("Amoxicillin/clavulanic acid", "Polymyxin B"))
|
|
expect_identical(ab_name(x = c("AMC", "PLB"), tolower = TRUE, language = NULL),
|
|
c("amoxicillin/clavulanic acid", "polymyxin B"))
|
|
|
|
expect_equal(class(ab_info("AMX")), "list")
|
|
|
|
expect_error(ab_property("amox", "invalid property"))
|
|
expect_error(ab_name("amox", language = "INVALID"))
|
|
expect_output(print(ab_name("amox", language = NULL)))
|
|
|
|
expect_equal(ab_name("21066-6", language = NULL), "Ampicillin")
|
|
expect_equal(ab_loinc("ampicillin"),
|
|
c("21066-6", "3355-5", "33562-0", "33919-2", "43883-8", "43884-6", "87604-5"))
|
|
|
|
expect_true(ab_url("AMX") %like% "whocc.no")
|
|
expect_warning(ab_url("ASP"))
|
|
})
|