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aa_globals.R
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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aa_helper_functions.R
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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aa_helper_pm_functions.R
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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ab.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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ab_from_text.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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ab_property.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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ab_selectors.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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add_custom_antimicrobials.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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age.R
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documentation fix
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2022-11-05 08:18:06 +01:00 |
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amr.R
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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atc_online.R
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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av.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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av_from_text.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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av_property.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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availability.R
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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bug_drug_combinations.R
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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count.R
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add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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custom_eucast_rules.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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data.R
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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deprecated.R
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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disk.R
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add column to `as.mic()` and `as.disk()` warnings
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2022-11-28 19:39:52 +01:00 |
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episode.R
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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eucast_rules.R
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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first_isolate.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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g.test.R
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fix for `NA` in `as.ab()`
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2022-10-10 15:44:59 +02:00 |
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ggplot_pca.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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ggplot_rsi.R
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add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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guess_ab_col.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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italicise_taxonomy.R
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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join_microorganisms.R
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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key_antimicrobials.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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kurtosis.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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like.R
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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mdro.R
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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mean_amr_distance.R
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mean AMR distance
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2022-10-21 16:02:14 +02:00 |
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mic.R
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add column to `as.mic()` and `as.disk()` warnings
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2022-11-28 19:39:52 +01:00 |
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mo.R
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unit tests
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2022-12-20 22:18:50 +01:00 |
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mo_matching_score.R
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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mo_property.R
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unit tests
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2022-12-20 22:18:50 +01:00 |
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mo_source.R
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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pca.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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plot.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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proportion.R
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completely updated `antibiotics`
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2022-10-30 14:31:45 +01:00 |
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random.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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resistance_predict.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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rsi.R
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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rsi_calc.R
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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rsi_df.R
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add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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skewness.R
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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sysdata.rda
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unit tests
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2022-12-20 22:18:50 +01:00 |
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translate.R
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website update
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2022-12-11 11:44:29 +01:00 |
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vctrs.R
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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whocc.R
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website update
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2022-12-11 11:44:29 +01:00 |
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zzz.R
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
dr. M.S. (Matthijs) Berends
6f4bb603ec