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AMR/NEWS.md

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0.2.0

New

  • Full support for Windows, Linux and macOS
  • Function guess_bactid to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
  • Functions clipboard_import and clipboard_export as helper functions to quickly copy and paste from/to software like Excel and SPSS
  • Function MDRO to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via this link. Functions BRMO and MRGN are wrappers for Dutch and German guidelines, respectively
  • Function freq to create frequency tables, with additional info in a header
  • New algorithm to determine weighted isolates, can now be "points" or "keyantibiotics", see ?first_isolate
  • New print format for tibbles and data.tables

Changed

  • Support for older R versions, only R 3.1.3 or later is needed
  • Renamed dataset ablist to antibiotics
  • Renamed dataset bactlist to microorganisms
  • Added more microorganisms to bactlist
  • Added analysis examples on help page of dataset septic_patients
  • Added support for character vector in join functions
  • Added warnings when a join results in more rows after than before the join
  • Altered %like% to make it case insensitive
  • For parameters of functions first_isolate and EUCAST_rules the column names are now case-insensitive
  • Functions as.rsi and as.mic now add the package name and version as attribute

Other

0.1.1

  • EUCAST_rules applies for amoxicillin even if ampicillin is missing
  • Edited column names to comply with GLIMS, the laboratory information system
  • Added more valid MIC values
  • Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
  • Added barplots for rsi and mic classes

0.1.0

  • First submission to CRAN.